SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in alpha proteobacterium HIMB59

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

377 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 149
P-loop containing nucleoside triphosphate hydrolases MOP-like 121
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 123
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 114
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 102
Actin-like ATPase domain Actin-like ATPase domain 103
Folate-binding domain Aminomethyltransferase beta-barrel domain 95
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 74
MetI-like MetI-like 63
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 63
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 61
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 61
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 51
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 54
GroES-like NAD(P)-binding Rossmann-fold domains 41
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 43
FAD/NAD(P)-binding domain Folate-binding domain 42
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 41
PreATP-grasp domain Rudiment single hybrid motif 42
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 42
Class II aaRS and biotin synthetases Class II aaRS ABD-related 42
PurM N-terminal domain-like PurM C-terminal domain-like 43
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 42
ISP domain Bet v1-like 31
Translation proteins EF-G C-terminal domain-like 32
ACT-like ACT-like 33
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 32
Thiolase-like Thiolase-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
CheY-like C-terminal effector domain of the bipartite response regulators 31
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Thioredoxin-like GST C-terminal domain-like 31
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Formyltransferase FMT C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Nucleotidyltransferase ACT-like 22
"Winged helix" DNA-binding domain GAF domain-like 21
PLP-binding barrel Alanine racemase C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Single hybrid motif CoA-dependent acyltransferases 22
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 21
MalF N-terminal region-like MetI-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
FAD-linked reductases, C-terminal domain Folate-binding domain 21
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Translation proteins ThrRS/AlaRS common domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Class II aaRS and biotin synthetases GAD domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Trypsin-like serine proteases PDZ domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
DNA clamp DNA clamp 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Bacterial muramidases Lysozyme-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Periplasmic binding protein-like II ACT-like 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
CheY-like Homeodomain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
HD-domain/PDEase-like ACT-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
PIN domain-like Ribonuclease H-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
RNase III domain-like dsRNA-binding domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
Thioredoxin-like Nqo1 middle domain-like 11
YajQ-like YajQ-like 11
Carbamate kinase-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Poly A polymerase C-terminal region-like ACT-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
HD-domain/PDEase-like Nucleotidyltransferase 11
HD-domain/PDEase-like TGS-like 11
Nucleic acid-binding proteins RuvA domain 2-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Actin-like ATPase domain Nucleotide-diphospho-sugar transferases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
MgtE N-terminal domain-like CBS-domain pair 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
RuvA domain 2-like BRCT domain 11
YrdC/RibB RibA-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PreATP-grasp domain Aldolase 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Aldolase Single hybrid motif 11
Zinc beta-ribbon DNA primase core 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins PheT/TilS domain 11
Aldolase post-HMGL domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
4Fe-4S ferredoxins ADC-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Class II aaRS and biotin synthetases Translation proteins 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Single hybrid motif TK C-terminal domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PreATP-grasp domain PreATP-grasp domain 11
PIN domain-like DNA/RNA polymerases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
PDZ domain-like ClpP/crotonase 11
Nucleic acid-binding proteins GAD domain-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
FAD/NAD(P)-binding domain PurM C-terminal domain-like 11
PDZ domain-like PDZ domain-like 11
Rudiment single hybrid motif post-HMGL domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Thioredoxin-like TPR-like 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Ribokinase-like Nucleotidylyl transferase 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PUA domain-like alpha/beta knot 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidyltransferase Nucleotidyltransferase 11
GIY-YIG endonuclease RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Translation proteins Ribosomal protein S5 domain 2-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Folate-binding domain TrmE connector domain 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Rudiment single hybrid motif Aldolase 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
TerB-like Chaperone J-domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidylyl transferase Riboflavin kinase-like 11
CarD-like TRCF domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
post-HMGL domain-like Single hybrid motif 11
SIS domain CBS-domain pair 11
PreATP-grasp domain Single hybrid motif 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
PreATP-grasp domain post-HMGL domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
CBS-domain pair MgtE membrane domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Nucleotide-binding domain Nucleotide-binding domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Carbamate kinase-like PUA domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
2Fe-2S ferredoxin-like ADC-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
dUTPase-like dUTPase-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Translation proteins Translation proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
FAD/NAD(P)-binding domain PurM N-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PheT/TilS domain Putative DNA-binding domain 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
(Trans)glycosidases Glycosyl hydrolase domain 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
TGS-like ACT-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Nucleotidyltransferase TGS-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 11
Rudiment single hybrid motif Single hybrid motif 11
Translation proteins PRC-barrel domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11

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