SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Methylococcus capsulatus str. Bath

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

683 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2714
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 217
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 176
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 176
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 176
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 176
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 165
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 147
Actin-like ATPase domain Actin-like ATPase domain 125
Calcium ATPase, transduction domain A HAD-like 116
Nucleotide cyclase EAL domain-like 1111
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1010
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 104
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 105
Cytochrome c Cytochrome c 105
PYP-like sensor domain (PAS domain) Nucleotide cyclase 99
PYP-like sensor domain (PAS domain) EAL domain-like 99
HAD-like Calcium ATPase, transmembrane domain M 94
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 94
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 94
CheY-like C-terminal effector domain of the bipartite response regulators 82
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 83
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 73
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 75
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 54
Triger factor/SurA peptide-binding domain-like FKBP-like 54
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
CheY-like Homeodomain-like 52
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 53
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 54
P-loop containing nucleoside triphosphate hydrolases MOP-like 51
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 53
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
PYP-like sensor domain (PAS domain) GAF domain-like 44
Translation proteins EF-G C-terminal domain-like 43
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 41
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 41
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
PDZ domain-like PDZ domain-like 43
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 43
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 42
Nqo1 middle domain-like Nqo1C-terminal domain-like 43
PreATP-grasp domain Rudiment single hybrid motif 41
Trypsin-like serine proteases PDZ domain-like 43
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 44
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 41
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 41
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 43
CheY-like P-loop containing nucleoside triphosphate hydrolases 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
Thioredoxin-like GST C-terminal domain-like 41
GroEL equatorial domain-like GroEL apical domain-like 32
Thioredoxin-like Nqo1C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
4Fe-4S ferredoxins ADC-like 32
Nucleotidyltransferase ACT-like 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Thioredoxin-like Nqo1 FMN-binding domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
RuvA domain 2-like Nucleic acid-binding proteins 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
GroEL equatorial domain-like GroEL-intermediate domain like 32
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Cupredoxins Cupredoxins 33
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Lysozyme-like beta-lactamase/transpeptidase-like 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
DNA methylase specificity domain DNA methylase specificity domain 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Homeodomain-like Ribonuclease H-like 31
2Fe-2S ferredoxin-like ADC-like 32
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 31
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
HMA, heavy metal-associated domain HAD-like 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 32
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
(Trans)glycosidases Glycosyl hydrolase domain 33
HD-domain/PDEase-like ACT-like 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Galactose mutarotase-like E set domains 32
Acetyl-CoA synthetase-like ACP-like 33
Thiolase-like Thiolase-like 31
ACT-like ACT-like 32
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 32
HD-domain/PDEase-like Nucleotidyltransferase 32
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 31
GroEL-intermediate domain like GroEL apical domain-like 32
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
GAF domain-like Nucleotide cyclase 33
Thioredoxin-like Nqo1 middle domain-like 32
GroES-like NAD(P)-binding Rossmann-fold domains 31
Multiheme cytochromes Multiheme cytochromes 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
TGS-like ACT-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Lysozyme-like LysM domain 22
PKD domain Multiheme cytochromes 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
P-loop containing nucleoside triphosphate hydrolases TrpR-like 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Carbohydrate-binding domain Carbohydrate-binding domain 22
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
E set domains (Trans)glycosidases 22
Nqo5-like HydB/Nqo4-like 21
Histidine-containing phosphotransfer domain, HPT domain CheY-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 21
Translation proteins Ribosomal protein S5 domain 2-like 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
PHP domain-like P-loop containing nucleoside triphosphate hydrolases 22
GAF domain-like EAL domain-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
alpha-helical ferredoxin Nucleotide-binding domain 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
CheY-like Nucleotide cyclase 22
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nucleotidyltransferase TGS-like 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
HD-domain/PDEase-like TGS-like 21
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
Single hybrid motif CoA-dependent acyltransferases 21
E set domains Glycosyl hydrolase domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Alpha-L RNA-binding motif Pseudouridine synthase 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
PYP-like sensor domain (PAS domain) CheY-like 22
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
L30e-like alpha/beta knot 21
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain EAL domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Thioesterase/thiol ester dehydrase-isomerase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins BRCT domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
DNA-glycosylase Nudix 11
vWA-like TPR-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
E set domains E set domains 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
TSP type-3 repeat OmpA-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
HD-domain/PDEase-like CheY-like 11
Carbohydrate-binding domain Fibronectin type III 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like PUA domain-like 11
ACP-like alpha/beta-Hydrolases 11
Carbohydrate-binding domain Cytochrome c 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Translation proteins PRC-barrel domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
FKBP-like FKBP-like 11
Formyltransferase FMT C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
UROD/MetE-like UROD/MetE-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
MoaD/ThiS ThiG-like 11
L,D-transpeptidase catalytic domain-like Sporulation related repeat 11
GIY-YIG endonuclease RuvA domain 2-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Tetrapyrrole methylase Heme iron utilization protein-like 11
Thioredoxin-like Cytochrome c 11
PreATP-grasp domain PreATP-grasp domain 11
Thioredoxin-like Six-hairpin glycosidases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
post-HMGL domain-like Single hybrid motif 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
PHP14-like Phospholipase D/nuclease 11
Zinc beta-ribbon Zinc beta-ribbon 11
CoA-dependent acyltransferases ACP-like 11
Nucleic acid-binding proteins GAD domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
PurS-like FGAM synthase PurL, linker domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Ribonuclease H-like DNA/RNA polymerases 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Tropomyosin Smc hinge domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GAF domain-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
PIN domain-like DNA/RNA polymerases 11
alpha-helical ferredoxin SCP-like 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
GAF domain-like CheY-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
alpha-helical ferredoxin alpha-helical ferredoxin 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Calcium-dependent phosphotriesterase 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Methylesterase CheB, C-terminal domain Nucleotide cyclase 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Ribonuclease H-like RuvA domain 2-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Thiolase-like GAF domain-like 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Protease propeptides/inhibitors Subtilisin-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins PheT/TilS domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Nucleotidyltransferase PHP domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide cyclase 11
TGS-like ThrRS/AlaRS common domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Flavoproteins Riboflavin synthase domain-like 11
PP2C-like Protein kinase-like (PK-like) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Carbohydrate-binding domain (Trans)glycosidases 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
HCP-like HCP-like 11
Tropomyosin Duplicated hybrid motif 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Putative DNA-binding domain Translation proteins 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
DNA polymerase beta, N-terminal domain-like Sec63 N-terminal domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Thioesterase/thiol ester dehydrase-isomerase 11
ACP-like Trimeric LpxA-like enzymes 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Acetyl-CoA synthetase-like Glycerol-3-phosphate (1)-acyltransferase 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Nucleotide-binding domain Riboflavin synthase domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Ribokinase-like Nucleotidylyl transferase 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
CBS-domain pair EAL domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
CheW-like CheY-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Nucleotide cyclase 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
GroEL-intermediate domain like GroEL-intermediate domain like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Chorismate mutase II ACT-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
Periplasmic binding protein-like II Lysozyme-like 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Aldolase Single hybrid motif 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
ACP-like Thioesterase/thiol ester dehydrase-isomerase 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Galactose-binding domain-like Galactose-binding domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
LysM domain Sporulation related repeat 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
PPK N-terminal domain-like PHP14-like 11
Homodimeric domain of signal transducing histidine kinase CheY-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
HD-domain/PDEase-like Nucleotide cyclase 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
GAF domain-like NAD(P)-binding Rossmann-fold domains 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
PurS-like PurM C-terminal domain-like 11
PurS-like Class I glutamine amidotransferase-like 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
FabD/lysophospholipase-like ACP-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
RibA-like Dihydrofolate reductase-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
LmbE-like Nucleotide-diphospho-sugar transferases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Homeodomain-like Homeodomain-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidyltransferase Nucleotidyltransferase 11
GAF domain-like ACP-like 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
TGS-like Class II aaRS and biotin synthetases 11
Multiheme cytochromes Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
ACP-like ACP-like 11
Ribulose-phoshate binding barrel SIS domain 11
Trigger factor ribosome-binding domain FKBP-like 11
TerB-like Chaperone J-domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ankyrin repeat Ankyrin repeat 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Fic-like "Winged helix" DNA-binding domain 11
Zinc beta-ribbon DNA primase core 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
CBS-domain pair MgtE membrane domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Sensory domain-like HAMP domain-like 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
S-adenosyl-L-methionine-dependent methyltransferases EAL domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Homeodomain-like Probable bacterial effector-binding domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
RuvA domain 2-like RuvA domain 2-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
DNA clamp DNA clamp 11
Sensory domain-like PP2C-like 11
Thiolase-like FabD/lysophospholipase-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
CarD-like TRCF domain-like 11
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Hsp33 domain HSP33 redox switch-like 11
Fibronectin type III Cytochrome c 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
LysM domain L,D-transpeptidase catalytic domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PurS-like PurM N-terminal domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
PYP-like sensor domain (PAS domain) PP2C-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
NTF2-like Sec-C motif 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
RuvA domain 2-like BRCT domain 11
Tex N-terminal region-like RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
PUA domain-like alpha/beta knot 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
NHL repeat Multiheme cytochromes 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
PKD domain PKD domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Nucleotidylyl transferase tRNA-binding arm 11
FabD/lysophospholipase-like Thioesterase/thiol ester dehydrase-isomerase 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
FMN-binding split barrel UbiD C-terminal domain-like 11
OMPA-like OmpA-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
PheT/TilS domain Putative DNA-binding domain 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
Homing endonucleases PFL-like glycyl radical enzymes 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Translation proteins ThrRS/AlaRS common domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases GIY-YIG endonuclease 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Pseudouridine synthase PUA domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Macro domain-like Zn-dependent exopeptidases 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Ribonuclease H-like HRDC-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
CheY-like CheY-like 11
Sec63 N-terminal domain-like PHP domain-like 11
Sec63 N-terminal domain-like Nucleotidyltransferase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Thiolase-like ACP-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
GAF domain-like Thioesterase/thiol ester dehydrase-isomerase 11
S-adenosyl-L-methionine-dependent methyltransferases Restriction endonuclease-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nudix Thiamin phosphate synthase 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
PIN domain-like Ribonuclease H-like 11
CheY-like EAL domain-like 11
"Winged helix" DNA-binding domain GAF domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Periplasmic binding protein-like II ACT-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Tropomyosin Tropomyosin 11
Aldolase post-HMGL domain-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
YrdC/RibB RibA-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Ribosomal protein L6 Ribosomal protein L6 11
PH0987 N-terminal domain-like Cyclophilin-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Hedgehog/intein (Hint) domain PFL-like glycyl radical enzymes 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
GAF domain-like GAF domain-like 11
GAF domain-like HD-domain/PDEase-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Carbamate kinase-like ACT-like 11
MOP-like MOP-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Rhodanese/Cell cycle control phosphatase Ankyrin repeat 11
PK beta-barrel domain-like PK C-terminal domain-like 11
CBS-domain pair Nucleotide cyclase 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
TGS-like Class II aaRS ABD-related 11
Nucleotide-binding domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
TPR-like TPR-like 11
Galactose-binding domain-like Six-hairpin glycosidases 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Methylesterase CheB, C-terminal domain EAL domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Cytochrome P450 4Fe-4S ferredoxins 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
MesJ substrate recognition domain-like PheT/TilS domain 11
PDZ domain-like ClpP/crotonase 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
ISP domain Bet v1-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Tex N-terminal region-like Ribonuclease H-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
OMPA-like TSP type-3 repeat 11
PRTase-like PRTase-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
FabD/lysophospholipase-like GAF domain-like 11
Multiheme cytochromes Flavoproteins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Pectin lyase-like Pectin lyase-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Translation proteins Translation proteins 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
HAMP domain-like PP2C-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Resolvase-like Homeodomain-like 11
Multiheme cytochromes Riboflavin synthase domain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase S-adenosyl-L-methionine-dependent methyltransferases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
HRDC-like HRDC-like 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11

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