SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Azospirillum lipoferum 4B

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

816 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 9555
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5639
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 541
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 4939
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 4833
Homodimeric domain of signal transducing histidine kinase CheY-like 4737
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4617
PYP-like sensor domain (PAS domain) CheY-like 3325
CheY-like C-terminal effector domain of the bipartite response regulators 334
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 3123
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 264
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 255
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 246
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 223
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 201
TPR-like TPR-like 2013
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1712
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 174
Histidine-containing phosphotransfer domain, HPT domain CheY-like 1717
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1716
Nucleotide cyclase EAL domain-like 1612
CheY-like CheY-like 1515
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 154
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 1514
P-loop containing nucleoside triphosphate hydrolases MOP-like 151
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 148
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 147
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 145
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 141
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 134
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 133
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 133
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 133
PYP-like sensor domain (PAS domain) EAL domain-like 139
Thioredoxin-like GST C-terminal domain-like 131
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 133
Actin-like ATPase domain Actin-like ATPase domain 135
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 131
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 133
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 123
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 126
GroES-like NAD(P)-binding Rossmann-fold domains 122
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 122
Homeodomain-like Homeodomain-like 125
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 122
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 115
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 111
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 118
cAMP-binding domain-like "Winged helix" DNA-binding domain 102
Thiolase-like Thiolase-like 102
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 107
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 1010
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 93
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 98
CheY-like Homeodomain-like 93
"Winged helix" DNA-binding domain GAF domain-like 92
CheY-like Nucleotide cyclase 85
CheY-like P-loop containing nucleoside triphosphate hydrolases 82
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 81
beta-Roll beta-Roll 76
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 72
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 71
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 76
Pentapeptide repeat-like Pentapeptide repeat-like 72
PreATP-grasp domain Rudiment single hybrid motif 72
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 75
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 74
HAMP domain-like PYP-like sensor domain (PAS domain) 66
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
Cytochrome c Cytochrome c 64
GAF domain-like Homodimeric domain of signal transducing histidine kinase 66
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 63
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 64
Nucleic acid-binding proteins Nucleic acid-binding proteins 64
PYP-like sensor domain (PAS domain) GAF domain-like 66
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 62
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 63
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 52
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 52
ISP domain Bet v1-like 51
Enolase N-terminal domain-like Enolase C-terminal domain-like 51
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 52
HAD-like Calcium ATPase, transmembrane domain M 54
Calcium ATPase, transduction domain A HAD-like 54
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
CheY-like HD-domain/PDEase-like 53
Homeodomain-like SIS domain 51
MoeA N-terminal region -like MoeA C-terminal domain-like 52
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 52
P-loop containing nucleoside triphosphate hydrolases GAF domain-like 55
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
CheY-like Methylesterase CheB, C-terminal domain 51
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 55
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
"Winged helix" DNA-binding domain Chorismate lyase-like 52
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 54
Trypsin-like serine proteases PDZ domain-like 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 54
(Trans)glycosidases Glycosyl hydrolase domain 55
E set domains (Trans)glycosidases 55
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 52
ACT-like ACT-like 54
Methyl-accepting chemotaxis protein (MCP) signaling domain PilZ domain-like 54
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 52
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 52
Histidine-containing phosphotransfer domain, HPT domain CheW-like 54
EF-G C-terminal domain-like EF-G C-terminal domain-like 53
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 52
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 54
HAMP domain-like CheY-like 55
Translation proteins EF-G C-terminal domain-like 53
FKBP-like Triger factor/SurA peptide-binding domain-like 44
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 42
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 42
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 42
MetI-like MetI-like 42
L30e-like alpha/beta knot 41
Class I glutamine amidotransferase-like Homeodomain-like 41
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 43
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 42
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
Lysozyme-like beta-lactamase/transpeptidase-like 43
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Phospholipase D/nuclease Phospholipase D/nuclease 42
ParB/Sulfiredoxin KorB DNA-binding domain-like 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
GAF domain-like CheY-like 44
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
Cupredoxins Cupredoxins 43
"Winged helix" DNA-binding domain PLP-dependent transferases 41
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 44
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 41
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 44
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 44
Pectin lyase-like Pectin lyase-like 33
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 33
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
ACP-like Acetyl-CoA synthetase-like 33
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 32
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 32
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
PDZ domain-like ClpP/crotonase 31
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 32
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 32
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
Homodimeric domain of signal transducing histidine kinase CheW-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 32
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
Translation proteins Ribosomal protein S5 domain 2-like 31
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
CheW-like CheW-like 33
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 33
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
E set domains Glycosyl hydrolase domain 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
ClpP/crotonase ClpP/crotonase 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Nqo1 middle domain-like Nqo1C-terminal domain-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
HMA, heavy metal-associated domain HAD-like 33
HlyD-like secretion proteins HlyD-like secretion proteins 33
GroEL equatorial domain-like GroEL apical domain-like 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Alpha-L RNA-binding motif Pseudouridine synthase 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
FliG FliG 31
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 32
PDZ domain-like PDZ domain-like 31
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 33
(Trans)glycosidases (Trans)glycosidases 33
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
GAF domain-like Nucleotide cyclase 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
PK beta-barrel domain-like PK C-terminal domain-like 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
CheC-like Surface presentation of antigens (SPOA) 21
PH0987 N-terminal domain-like Cyclophilin-like 21
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 21
Rudiment single hybrid motif Single hybrid motif 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Phage tail proteins gp5 N-terminal domain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
ACT-like Formyltransferase 21
(Trans)glycosidases CalX-like 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 22
Thioredoxin-like Nqo1C-terminal domain-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Thiolase-like FabD/lysophospholipase-like 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Macro domain-like Zn-dependent exopeptidases 21
Phage tail proteins Phage tail proteins 22
Phage tail proteins Phage fibre proteins 22
Aldolase AFP III-like domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
4Fe-4S ferredoxins ADC-like 21
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 22
Nucleotidylyl transferase Alpha-L RNA-binding motif 21
PP2C-like Protein kinase-like (PK-like) 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
GIY-YIG endonuclease RuvA domain 2-like 22
CheW-like CheY-like 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Regulatory protein AraC Homeodomain-like 22
YrdC/RibB RibA-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Periplasmic binding protein-like II Nucleotide cyclase 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
GroEL-intermediate domain like GroEL apical domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Metalloproteases ("zincins"), catalytic domain beta-Roll 21
Thioredoxin-like Nqo1 FMN-binding domain-like 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
NTF2-like Sec-C motif 21
Phase 1 flagellin Phase 1 flagellin 22
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 21
Translation proteins ThrRS/AlaRS common domain 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Nucleotide-diphospho-sugar transferases HAD-like 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Nucleotidyltransferase HD-domain/PDEase-like 22
alpha-helical ferredoxin Nucleotide-binding domain 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
CoA-dependent acyltransferases CoA-dependent acyltransferases 22
RuvA domain 2-like RuvA domain 2-like 22
ALDH-like Dehydroquinate synthase-like 21
alpha/beta-Hydrolases alpha/beta-Hydrolases 21
GAF domain-like EAL domain-like 22
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 21
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
ACP-like ACP-like 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
PYP-like sensor domain (PAS domain) Homeodomain-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
HPr-like Phosphoenolpyruvate/pyruvate domain 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
TPR-like HCP-like 22
CarD-like TRCF domain-like 22
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 21
P-loop containing nucleoside triphosphate hydrolases Toll/Interleukin receptor TIR domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 21
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
PGBD-like L,D-transpeptidase catalytic domain-like 21
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 22
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
PYP-like sensor domain (PAS domain) PilZ domain-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
PreATP-grasp domain Single hybrid motif 21
ACP-like CoA-dependent acyltransferases 22
HPr-like Phosphohistidine domain 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Thioredoxin-like Nqo1 middle domain-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Lysozyme-like PGBD-like 22
Protein kinase-like (PK-like) (Trans)glycosidases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
GAF domain-like Homeodomain-like 22
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
P-loop containing nucleoside triphosphate hydrolases CarD-like 22
gp5 N-terminal domain-like Phage fibre proteins 22
FAD/NAD(P)-binding domain Thioredoxin-like 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Sensory domain-like CheY-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
HD-domain/PDEase-like ACT-like 22
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 22
HCP-like HCP-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Bacterial muramidases Lysozyme-like 21
HCP-like Lysozyme-like 21
RmlC-like cupins Homeodomain-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Nucleotidyltransferase ACT-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
2Fe-2S ferredoxin-like ADC-like 21
Single hybrid motif CoA-dependent acyltransferases 21
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 22
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Single hybrid motif TK C-terminal domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Glucose permease domain IIB Glucose permease domain IIB 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain FKBP-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
cAMP-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 11
"Winged helix" DNA-binding domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
PYP-like sensor domain (PAS domain) Ribonuclease H-like 11
HAMP domain-like EAL domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Barwin-like endoglucanases Sporulation related repeat 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Periplasmic binding protein-like II ACT-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Globin-like Riboflavin synthase domain-like 11
Homodimeric domain of signal transducing histidine kinase Periplasmic binding protein-like II 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
GroES-like GroES-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
beta-sandwich domain of Sec23/24 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 11
Galactose-binding domain-like (Trans)glycosidases 11
P-loop containing nucleoside triphosphate hydrolases HD-domain/PDEase-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II EAL domain-like 11
Toll/Interleukin receptor TIR domain TPR-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Zinc beta-ribbon DNA primase core 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Clc chloride channel CBS-domain pair 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
SMAD/FHA domain Protein kinase-like (PK-like) 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
FMN-binding split barrel GAF domain-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Translation proteins Translation proteins 11
DNA clamp DNA clamp 11
PIN domain-like DNA/RNA polymerases 11
LysM domain Duplicated hybrid motif 11
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Duplicated hybrid motif HPr-like 11
TGS-like ThrRS/AlaRS common domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
DPP6 N-terminal domain-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
ACP-like Trimeric LpxA-like enzymes 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Ribokinase-like Nucleotidylyl transferase 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
L domain-like Toll/Interleukin receptor TIR domain 11
Nucleotide cyclase SMAD/FHA domain 11
Aldolase post-HMGL domain-like 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
LysM domain LysM domain 11
Cupredoxins Cytochrome c 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Translation proteins PRC-barrel domain 11
Caspase-like Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
TGS-like Class II aaRS and biotin synthetases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked oxidoreductase ALDH-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
P-loop containing nucleoside triphosphate hydrolases cAMP-binding domain-like 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Phoshotransferase/anion transport protein HPr-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Methionine synthase domain Methionine synthase activation domain-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like ACT-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Acyl-CoA N-acyltransferases (Nat) SCP-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Nudix "Winged helix" DNA-binding domain 11
HD-domain/PDEase-like TGS-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
GAF domain-like GAF domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Sensory domain-like PilZ domain-like 11
PYP-like sensor domain (PAS domain) Myosin rod fragments 11
DPP6 N-terminal domain-like Pectin lyase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
beta-Roll Integrin alpha N-terminal domain 11
PIN domain-like Ribonuclease H-like 11
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Protein kinase-like (PK-like) E set domains 11
Nucleotidyltransferase Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
NE0471 N-terminal domain-like lambda repressor-like DNA-binding domains 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
HAMP domain-like Nucleotide cyclase 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
EreA/ChaN-like PDZ domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
PHP domain-like AF1531-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Cadherin-like Pectin lyase-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
CBS-domain pair Nucleotide cyclase 11
PreATP-grasp domain PreATP-grasp domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases EreA/ChaN-like 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
OMPA-like OmpA-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Carbamate kinase-like PUA domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
"Winged helix" DNA-binding domain Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Thiolase-like ACP-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Nqo5-like HydB/Nqo4-like 11
Chelatase Thioredoxin-like 11
PYP-like sensor domain (PAS domain) Tropomyosin 11
cAMP-binding domain-like Homodimeric domain of signal transducing histidine kinase 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
ABC transporter transmembrane region cAMP-binding domain-like 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Thioredoxin-like Thioredoxin-like 11
PRTase-like PRTase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Tropomyosin ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
cAMP-binding domain-like cAMP-binding domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Resolvase-like Homeodomain-like 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
RuvA domain 2-like BRCT domain 11
Pectin lyase-like Caspase-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Concanavalin A-like lectins/glucanases Cadherin-like 11
Concanavalin A-like lectins/glucanases Pectin lyase-like 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
PTS system IIB component-like PTS system IIB component-like 11
Class II aaRS and biotin synthetases Translation proteins 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Nucleotidyltransferase TGS-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Inosine monophosphate dehydrogenase (IMPDH) Nitrite and sulphite reductase 4Fe-4S domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Nucleotide cyclase TPR-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Trypsin-like serine proteases SMAD/FHA domain 11
CoA-dependent acyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
ACP-like alpha/beta-Hydrolases 11
CBS-domain pair MgtE membrane domain-like 11
EAL domain-like CBS-domain pair 11
E set domains E set domains 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
PPK N-terminal domain-like PHP14-like 11
Nucleic acid-binding proteins GAD domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Outer arm dynein light chain 1 L domain-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
PHP14-like Phospholipase D/nuclease 11
Sensory domain-like HAMP domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
RelE-like P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like HD-domain/PDEase-like 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
Periplasmic binding protein-like II Rhodanese/Cell cycle control phosphatase 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
S-adenosyl-L-methionine-dependent methyltransferases Myosin rod fragments 11
FabD/lysophospholipase-like Glycerol-3-phosphate (1)-acyltransferase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Protein kinase-like (PK-like) GAF domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Periplasmic binding protein-like II 11
Flagellar hook protein flgE Flagellar hook protein flgE 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
DNA-glycosylase Nudix 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
ABC transporter transmembrane region ABC transporter transmembrane region 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
"Winged helix" DNA-binding domain Acetyl-CoA synthetase-like 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
ARM repeat ACT-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
S-adenosyl-L-methionine-dependent methyltransferases alpha/beta-Hydrolases 11
PUA domain-like alpha/beta knot 11
beta-Roll Cadherin-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
TGS-like Class II aaRS ABD-related 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
cAMP-binding domain-like CBS-domain pair 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Thioredoxin-like TPR-like 11
Molybdenum cofactor-binding domain Cytochrome c 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
L domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Outer arm dynein light chain 1 P-loop containing nucleoside triphosphate hydrolases 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like Thioesterase/thiol ester dehydrase-isomerase 11
Thioesterase/thiol ester dehydrase-isomerase Glycerol-3-phosphate (1)-acyltransferase 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Formyltransferase FMT C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Acetyl-CoA synthetase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Hsp33 domain HSP33 redox switch-like 11
GAF domain-like Phosphohistidine domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Ribonuclease H-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Thioredoxin-like Six-hairpin glycosidases 11
Cadherin-like Integrin alpha N-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Ribonuclease H-like HRDC-like 11
Duplicated hybrid motif Phosphohistidine domain 11
YebC-like PFL-like glycyl radical enzymes 11
DNA methylase specificity domain DNA methylase specificity domain 11
YlxR-like L30e-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Single hybrid motif alpha/beta-Hydrolases 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Thiolase-like Glycerol-3-phosphate (1)-acyltransferase 11
TGS-like ACT-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Nucleic acid-binding proteins BRCT domain 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
CheY-like EAL domain-like 11
Thiamin phosphate synthase Radical SAM enzymes 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
UDP-Glycosyltransferase/glycogen phosphorylase S-adenosyl-L-methionine-dependent methyltransferases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
TerB-like Chaperone J-domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Rhodanese/Cell cycle control phosphatase Activating enzymes of the ubiquitin-like proteins 11
FKBP-like FKBP-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
YajQ-like YajQ-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Outer arm dynein light chain 1 Toll/Interleukin receptor TIR domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
FabD/lysophospholipase-like ACP-like 11
Ribonuclease H-like Restriction endonuclease-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Tropomyosin Homodimeric domain of signal transducing histidine kinase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
MgtE N-terminal domain-like CBS-domain pair 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Ribonuclease H-like DNA/RNA polymerases 11
CBS-domain pair Homodimeric domain of signal transducing histidine kinase 11
HRDC-like HRDC-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
ADC synthase Class I glutamine amidotransferase-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11

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