SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Arcobacter sp. L

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

558 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6224
CheY-like C-terminal effector domain of the bipartite response regulators 282
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2012
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1913
Nucleotide cyclase EAL domain-like 179
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 159
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1411
Periplasmic binding protein-like II Periplasmic binding protein-like II 139
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1210
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 117
Actin-like ATPase domain Actin-like ATPase domain 104
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 103
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 95
Cytochrome c Cytochrome c 95
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 96
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 86
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 83
PYP-like sensor domain (PAS domain) EAL domain-like 86
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 85
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 85
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 85
Homeodomain-like Homeodomain-like 84
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 85
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 74
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 74
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 72
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 75
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 64
Homodimeric domain of signal transducing histidine kinase CheY-like 64
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 52
PreATP-grasp domain Rudiment single hybrid motif 53
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 53
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 54
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
GAF domain-like Nucleotide cyclase 55
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 51
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 52
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
CheY-like PYP-like sensor domain (PAS domain) 55
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 53
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 41
Periplasmic binding protein-like II Nucleotide cyclase 44
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 44
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
Homeodomain-like Ribonuclease H-like 41
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
Thiolase-like Thiolase-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Aldolase post-HMGL domain-like 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
Calcium ATPase, transduction domain A HAD-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Nucleic acid-binding proteins RuvA domain 2-like 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Sensory domain-like PYP-like sensor domain (PAS domain) 33
CheY-like Nucleotide cyclase 33
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 33
FAD/NAD(P)-binding domain HI0933 insert domain-like 31
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
CBS-domain pair Nucleotide cyclase 33
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
Translation proteins EF-G C-terminal domain-like 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
CheY-like HD-domain/PDEase-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Regulatory protein AraC Homeodomain-like 32
GAF domain-like PYP-like sensor domain (PAS domain) 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 21
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
ACT-like ACT-like 22
cAMP-binding domain-like CBS-domain pair 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Phage tail proteins Phage fibre proteins 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
CheY-like EAL domain-like 22
FKBP-like Triger factor/SurA peptide-binding domain-like 22
Sensory domain-like HAMP domain-like 22
Aldolase Single hybrid motif 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
Cadherin-like Cadherin-like 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
Periplasmic binding protein-like II ACT-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Phage tail proteins gp5 N-terminal domain-like 22
CalX-like CalX-like 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HMA, heavy metal-associated domain HAD-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
CheC-like Surface presentation of antigens (SPOA) 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
CBS-domain pair CBS-domain pair 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
GroES-like NAD(P)-binding Rossmann-fold domains 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Calcium ATPase, transmembrane domain M HAD-like 22
post-HMGL domain-like Single hybrid motif 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
LeuD/IlvD-like Aconitase iron-sulfur domain 22
Homodimeric domain of signal transducing histidine kinase CheW-like 22
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
Homeodomain-like Probable bacterial effector-binding domain 21
Ankyrin repeat Ankyrin repeat 21
OMPA-like OmpA-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
MOP-like MOP-like 22
Nucleotidyltransferase HD-domain/PDEase-like 22
CBS-domain pair EAL domain-like 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 22
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 21
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Sensory domain-like Nucleotide cyclase 22
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 22
gp5 N-terminal domain-like Phage fibre proteins 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
CheY-like CheY-like 22
PH0987 N-terminal domain-like Cyclophilin-like 22
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Acetyl-CoA synthetase-like Phosphoenolpyruvate/pyruvate domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Class II aaRS and biotin synthetases GAD domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Nucleotidyltransferase ACT-like 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Chorismate mutase II Periplasmic binding protein-like II 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
HD-domain/PDEase-like ACT-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
FliG FliG 11
Nqo5-like HydB/Nqo4-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PreATP-grasp domain PreATP-grasp domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
PDZ domain-like ClpP/crotonase 11
"Winged helix" DNA-binding domain GAF domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Serine metabolism enzymes domain ACT-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
YegP-like YegP-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Ammonium transporter Nucleotide cyclase 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Cadherin-like RCC1/BLIP-II 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
Thioredoxin-like Thioredoxin-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Translation proteins PRC-barrel domain 11
Rubredoxin-like Ferritin-like 11
Protein kinase-like (PK-like) TPR-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Quinohemoprotein amine dehydrogenase A chain, domain 3 E set domains 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleic acid-binding proteins GAD domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
CalX-like vWA-like 11
Protein kinase-like (PK-like) GAF domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
E set domains E set domains 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Cysteine proteinases Acyl-CoA N-acyltransferases (Nat) 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
Periplasmic binding protein-like II CheY-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
DNA clamp DNA clamp 11
YrdC/RibB RibA-like 11
Single hybrid motif CoA-dependent acyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Aldolase AFP III-like domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
L30e-like alpha/beta knot 11
Glutathione synthetase ATP-binding domain-like PsbU/PolX domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Translation proteins ThrRS/AlaRS common domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
RmlC-like cupins Homeodomain-like 11
PIN domain-like Ribonuclease H-like 11
PreATP-grasp domain Cyclophilin-like 11
HisI-like all-alpha NTP pyrophosphatases 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Ferredoxin thioredoxin reductase (FTR), catalytic beta chain Rhodanese/Cell cycle control phosphatase 11
Cytochrome c Quinohemoprotein amine dehydrogenase A chain, domain 3 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nucleotide-diphospho-sugar transferases HAD-like 11
Trigger factor ribosome-binding domain FKBP-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Outer membrane efflux proteins (OEP) OmpA-like 11
Macro domain-like Zn-dependent exopeptidases 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Lysozyme-like LysM domain 11
Ribosomal protein L6 Ribosomal protein L6 11
HAMP domain-like CheY-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
PIN domain-like DNA/RNA polymerases 11
Trypsin-like serine proteases PDZ domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Single hybrid motif Single hybrid motif 11
vWA-like TPR-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Nucleotidyltransferase TGS-like 11
Cyclophilin-like Cyclophilin-like 11
Formyltransferase FMT C-terminal domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
PHP domain-like AF1531-like 11
CarD-like TRCF domain-like 11
TSP type-3 repeat OmpA-like 11
P-loop containing nucleoside triphosphate hydrolases Rad50 coiled-coil Zn hook 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
YrdC/RibB Actin-like ATPase domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
"Winged helix" DNA-binding domain HRDC-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Cytochrome c E set domains 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Chorismate mutase II ACT-like 11
Translation proteins Translation proteins 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Resolvase-like Homeodomain-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
RuvA domain 2-like RuvA domain 2-like 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Class II aaRS and biotin synthetases Translation proteins 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 11
Ribonuclease H-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain MOP-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Rudiment single hybrid motif Single hybrid motif 11
Cyclophilin-like Single hybrid motif 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
PsbU/PolX domain-like RuvA domain 2-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Hemerythrin-like Hemerythrin-like 11
OmpA-like OmpA-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Rubredoxin-like Rubredoxin-like 11
Cytochrome c Thioredoxin-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Tex N-terminal region-like Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Glycerol-3-phosphate (1)-acyltransferase alpha/beta-Hydrolases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Urease, gamma-subunit Urease, beta-subunit 11
Rudiment single hybrid motif Cyclophilin-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
TPR-like GAF domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
CBS-domain pair RmlC-like cupins 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PDZ domain-like PDZ domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
PP2C-like Protein kinase-like (PK-like) 11
HCP-like Fe-S cluster assembly (FSCA) domain-like 11
HD-domain/PDEase-like TGS-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Zn-dependent exopeptidases Fibronectin type III 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
RuvA domain 2-like BRCT domain 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Ribonuclease H-like RuvA domain 2-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
UROD/MetE-like UROD/MetE-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Nucleotide cyclase 11
HCP-like HCP-like 11
GAF domain-like EAL domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Ribosomal protein S5 domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
MetI-like MetI-like 11
Sec-C motif NTF2-like 11
PreATP-grasp domain Single hybrid motif 11
GAF domain-like Homeodomain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Outer membrane efflux proteins (OEP) TSP type-3 repeat 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
TPR-like TPR-like 11
Protein kinase-like (PK-like) Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PK beta-barrel domain-like PK C-terminal domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Cadherin-like Cytochrome c 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Carbamate kinase-like ACT-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
NosL/MerB-like NosL/MerB-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
PH0987 N-terminal domain-like Single hybrid motif 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Nucleic acid-binding proteins BRCT domain 11
CheW-like CheY-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
TPR-like Nucleotide cyclase 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Fibronectin type III Fibronectin type III 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
YjeF N-terminal domain-like Ribokinase-like 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Nucleotide-binding domain Nucleotide-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Zinc beta-ribbon DNA primase core 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
TSP type-3 repeat TSP type-3 repeat 11
Glutathione synthetase ATP-binding domain-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Barwin-like endoglucanases Sporulation related repeat 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
YajQ-like YajQ-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
ACT-like Formyltransferase 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11

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