SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Advenella kashmirensis WT001

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

461 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 822
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 263
"Winged helix" DNA-binding domain GAF domain-like 231
Thioredoxin-like GST C-terminal domain-like 171
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 154
GroES-like NAD(P)-binding Rossmann-fold domains 142
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 142
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 133
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 125
Cytochrome c Cytochrome c 124
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 112
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 108
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 101
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 103
"Winged helix" DNA-binding domain Chorismate lyase-like 91
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 97
Enolase N-terminal domain-like Enolase C-terminal domain-like 91
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 84
Homeodomain-like Homeodomain-like 84
Thiolase-like Thiolase-like 81
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 71
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 72
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 72
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 72
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 73
CheY-like C-terminal effector domain of the bipartite response regulators 71
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 73
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 65
Pentapeptide repeat-like Pentapeptide repeat-like 63
P-loop containing nucleoside triphosphate hydrolases MOP-like 62
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 61
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 66
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 61
Oxidoreductase molybdopterin-binding domain E set domains 61
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 61
Actin-like ATPase domain Actin-like ATPase domain 63
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 51
Phage tail proteins Phage fibre proteins 52
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
CheY-like Homeodomain-like 53
Phage tail proteins gp5 N-terminal domain-like 52
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 51
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 54
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 54
Class I glutamine amidotransferase-like Homeodomain-like 52
ClpP/crotonase ClpP/crotonase 52
gp5 N-terminal domain-like Phage fibre proteins 52
Phage tail proteins Phage tail proteins 52
"Winged helix" DNA-binding domain PLP-dependent transferases 41
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 42
PreATP-grasp domain Rudiment single hybrid motif 43
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 43
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
Triger factor/SurA peptide-binding domain-like FKBP-like 43
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 43
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 43
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 43
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 43
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 43
ISP domain Bet v1-like 41
P-loop containing nucleoside triphosphate hydrolases Translation proteins 44
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 43
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Phospholipase D/nuclease Phospholipase D/nuclease 32
Homeodomain-like SIS domain 32
PLP-binding barrel Alanine racemase C-terminal domain-like 31
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite/Sulfite reductase N-terminal domain-like 33
LeuD/IlvD-like Aconitase iron-sulfur domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
CBS-domain pair FAD-binding/transporter-associated domain-like 32
cAMP-binding domain-like "Winged helix" DNA-binding domain 32
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 33
Translation proteins EF-G C-terminal domain-like 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 31
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 32
HAD-like Calcium ATPase, transmembrane domain M 33
Nucleic acid-binding proteins RuvA domain 2-like 33
GroES-like GroES-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
EF-G C-terminal domain-like EF-G C-terminal domain-like 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
PDZ domain-like PDZ domain-like 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Adhesin YadA, collagen-binding domain Pili subunits 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Rudiment single hybrid motif Single hybrid motif 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
TTHA1013/TTHA0281-like Ribbon-helix-helix 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Trypsin-like serine proteases PDZ domain-like 22
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
HD-domain/PDEase-like ACT-like 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
PreATP-grasp domain Single hybrid motif 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
RmlC-like cupins Homeodomain-like 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
ACT-like ACT-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Alpha-L RNA-binding motif Pseudouridine synthase 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
YegP-like YegP-like 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 21
MetI-like MetI-like 22
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 21
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 21
Calcium ATPase, transduction domain A HAD-like 22
DsbC/DsbG N-terminal domain-like Thioredoxin-like 22
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
L30e-like alpha/beta knot 21
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
2Fe-2S ferredoxin-like Bet v1-like 11
HD-domain/PDEase-like TGS-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Quinoprotein alcohol dehydrogenase-like DPP6 N-terminal domain-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
ACT-like Formyltransferase 11
PUA domain-like alpha/beta knot 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
"Winged helix" DNA-binding domain Nucleotidyltransferase 11
Globin-like Riboflavin synthase domain-like 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
PIN domain-like Ribonuclease H-like 11
Ribonuclease H-like RuvA domain 2-like 11
2Fe-2S ferredoxin-like ADC-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
4Fe-4S ferredoxins ADC-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
RuvA domain 2-like RuvA domain 2-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
TGS-like ACT-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases Clavaminate synthase-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Periplasmic binding protein-like II MetI-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nucleic acid-binding proteins BRCT domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
alpha-helical ferredoxin Nucleotide-binding domain 11
DNA-glycosylase Nudix 11
RuvA domain 2-like MCP/YpsA-like 11
FAD-linked oxidoreductase ALDH-like 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Tex N-terminal region-like RuvA domain 2-like 11
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Tex N-terminal region-like Ribonuclease H-like 11
PapD-like Periplasmic chaperone C-domain 11
Bacterial muramidases Lysozyme-like 11
PreATP-grasp domain ClpP/crotonase 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Clc chloride channel CBS-domain pair 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Ribonuclease H-like DNA/RNA polymerases 11
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
HMA, heavy metal-associated domain HAD-like 11
YajQ-like YajQ-like 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Ferritin-like Ferritin-like 11
CarD-like TRCF domain-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Translation proteins ThrRS/AlaRS common domain 11
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Flavoproteins Riboflavin synthase domain-like 11
Toll/Interleukin receptor TIR domain Quinoprotein alcohol dehydrogenase-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
MurE/MurF N-terminal domain MurE/MurF N-terminal domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Rudiment single hybrid motif ClpP/crotonase 11
RmlC-like cupins RmlC-like cupins 11
Lysozyme-like PGBD-like 11
Single hybrid motif ClpP/crotonase 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Carbamate kinase-like PUA domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PreATP-grasp domain PreATP-grasp domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Tautomerase/MIF Tautomerase/MIF 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
RNase III domain-like dsRNA-binding domain-like 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Hsp33 domain HSP33 redox switch-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Nucleotidyltransferase ACT-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
TPR-like "Winged helix" DNA-binding domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Aldolase post-HMGL domain-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Cytochrome P450 2Fe-2S ferredoxin-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
PIN domain-like DNA/RNA polymerases 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
PurM N-terminal domain-like PurM C-terminal domain-like 11
DNA clamp DNA clamp 11
Thioredoxin-like Nqo1 middle domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Folate-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 11
Regulatory protein AraC Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
YrdC/RibB RibA-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
"Winged helix" DNA-binding domain MOP-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
cAMP-binding domain-like CBS-domain pair 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Lysozyme-like LysM domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Ribbon-helix-helix ALDH-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleotidyltransferase TGS-like 11
Nucleic acid-binding proteins Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain FKBP-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Translation proteins PRC-barrel domain 11
Class II aaRS and biotin synthetases Class II aaRS ABD-related 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
PH0987 N-terminal domain-like Cyclophilin-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Cytochrome P450 Riboflavin synthase domain-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
ALDH-like Acetyl-CoA synthetase-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
FAD/NAD(P)-binding domain Thioredoxin-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
RuvA domain 2-like BRCT domain 11
Single hybrid motif CoA-dependent acyltransferases 11
HD-domain/PDEase-like Nucleotidyltransferase 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
XCC0632-like Periplasmic binding protein-like I 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
Macro domain-like Zn-dependent exopeptidases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Toll/Interleukin receptor TIR domain DPP6 N-terminal domain-like 11
Periplasmic binding protein-like II Voltage-gated potassium channels 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11

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