SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Agrobacterium sp. H13-3

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

703 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 732
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 5812
P-loop containing nucleoside triphosphate hydrolases MOP-like 471
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4020
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 333
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 295
Homeodomain-like Homeodomain-like 266
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 232
GroES-like NAD(P)-binding Rossmann-fold domains 222
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2116
CheY-like C-terminal effector domain of the bipartite response regulators 204
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 201
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 194
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 192
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1813
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 184
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 183
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 151
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 156
Actin-like ATPase domain Actin-like ATPase domain 157
Nucleotide cyclase EAL domain-like 147
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 141
Thioredoxin-like GST C-terminal domain-like 131
"Winged helix" DNA-binding domain GAF domain-like 122
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 124
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 125
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 122
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 114
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 119
Enolase N-terminal domain-like Enolase C-terminal domain-like 101
Thiolase-like Thiolase-like 101
PYP-like sensor domain (PAS domain) CheY-like 1010
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 104
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1010
Homodimeric domain of signal transducing histidine kinase CheY-like 99
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 93
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 93
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 93
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 93
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 93
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 93
MetI-like MetI-like 92
RmlC-like cupins Homeodomain-like 82
PreATP-grasp domain Rudiment single hybrid motif 83
"Winged helix" DNA-binding domain Actin-like ATPase domain 82
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 83
Regulatory protein AraC Homeodomain-like 83
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 72
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 73
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 73
CheY-like CheY-like 76
(Trans)glycosidases Glycosyl hydrolase domain 75
"Winged helix" DNA-binding domain Chorismate lyase-like 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
PLP-binding barrel Alanine racemase C-terminal domain-like 62
CheY-like P-loop containing nucleoside triphosphate hydrolases 62
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 61
PYP-like sensor domain (PAS domain) Nucleotide cyclase 64
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 63
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 64
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 62
Class I glutamine amidotransferase-like Homeodomain-like 62
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 62
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 63
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 65
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 53
Homeodomain-like SIS domain 51
Folate-binding domain Aminomethyltransferase beta-barrel domain 53
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 54
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
cAMP-binding domain-like "Winged helix" DNA-binding domain 51
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 51
CheY-like Homeodomain-like 51
PYP-like sensor domain (PAS domain) EAL domain-like 53
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 43
Calcium ATPase, transduction domain A HAD-like 44
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 42
Lysozyme-like PGBD-like 42
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 43
"Winged helix" DNA-binding domain PLP-dependent transferases 41
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 41
MalF N-terminal region-like MetI-like 41
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Lysozyme-like beta-lactamase/transpeptidase-like 42
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 43
PGBD-like L,D-transpeptidase catalytic domain-like 43
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 43
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 41
Glutathione synthetase ATP-binding domain-like Single hybrid motif 42
PreATP-grasp domain Single hybrid motif 42
ACT-like ACT-like 43
FAD/NAD(P)-binding domain Folate-binding domain 42
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 41
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Rudiment single hybrid motif Single hybrid motif 42
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
E set domains (Trans)glycosidases 44
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
HlyD-like secretion proteins HlyD-like secretion proteins 43
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
HAD-like Calcium ATPase, transmembrane domain M 44
Single hybrid motif CoA-dependent acyltransferases 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Heme-dependent catalase-like Class I glutamine amidotransferase-like 31
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
Alpha-L RNA-binding motif Pseudouridine synthase 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
lambda repressor-like DNA-binding domains RmlC-like cupins 31
HMA, heavy metal-associated domain HAD-like 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 32
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
CoA-dependent acyltransferases CoA-dependent acyltransferases 33
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 32
Trypsin-like serine proteases PDZ domain-like 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 32
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Cytochrome c Cytochrome c 32
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PYP-like sensor domain (PAS domain) GAF domain-like 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
PDZ domain-like PDZ domain-like 33
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 32
ACT-like Formyltransferase 31
Translation proteins EF-G C-terminal domain-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
LeuD/IlvD-like Aconitase iron-sulfur domain 33
HAMP domain-like Nucleotide cyclase 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
L30e-like alpha/beta knot 31
CheY-like Methylesterase CheB, C-terminal domain 32
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
FKBP-like Triger factor/SurA peptide-binding domain-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Nucleic acid-binding proteins RuvA domain 2-like 33
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 31
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
alpha/beta-Hydrolases alpha/beta-Hydrolases 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
GroEL-intermediate domain like GroEL apical domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
MFS general substrate transporter MFS general substrate transporter 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
PH0987 N-terminal domain-like Cyclophilin-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
MgtE N-terminal domain-like MgtE membrane domain-like 21
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
Nucleotidyltransferase ACT-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
HAMP domain-like EAL domain-like 22
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 21
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 21
Aldolase post-HMGL domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
CBS-domain pair MgtE membrane domain-like 21
Siroheme synthase middle domains-like Tetrapyrrole methylase 21
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 22
CheY-like Nucleotide cyclase 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
GAF domain-like CheY-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
GAF domain-like Nucleotide cyclase 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
GroEL equatorial domain-like GroEL apical domain-like 21
beta-lactamase/transpeptidase-like Sporulation related repeat 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Homeodomain-like Ribonuclease H-like 21
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 21
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Galactose-binding domain-like (Trans)glycosidases 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
GroEL equatorial domain-like GroEL-intermediate domain like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Pectin lyase-like Autotransporter 22
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
MgtE N-terminal domain-like CBS-domain pair 21
Galactose mutarotase-like Six-hairpin glycosidases 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 21
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
ISP domain Bet v1-like 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
AGR C 984p-like AGR C 984p-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 22
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
E set domains Glycosyl hydrolase domain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Sensory domain-like HAMP domain-like 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Translation proteins ThrRS/AlaRS common domain 22
ClpP/crotonase ClpP/crotonase 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 21
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
MetI-like P-loop containing nucleoside triphosphate hydrolases 22
Macro domain-like Zn-dependent exopeptidases 21
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
GAF domain-like GAF domain-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
GAF domain-like Homeodomain-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 22
Homodimeric domain of signal transducing histidine kinase CheW-like 21
Clc chloride channel CBS-domain pair 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
PIN domain-like DNA/RNA polymerases 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
CBS-domain pair Nucleotide cyclase 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
FAD-linked oxidoreductase ALDH-like 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain NAD(P)-linked oxidoreductase 11
Formyltransferase FMT C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
dUTPase-like dUTPase-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ribonuclease H-like HRDC-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Bacterial muramidases Lysozyme-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleotide-diphospho-sugar transferases Six-hairpin glycosidases 11
Galactose mutarotase-like Galactose mutarotase-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
Ribonuclease H-like DNA/RNA polymerases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Hsp33 domain HSP33 redox switch-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase alpha/beta-Hydrolases 11
Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
PDZ domain-like ClpP/crotonase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Zinc beta-ribbon DNA primase core 11
PK beta-barrel domain-like PK C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
CoA-dependent acyltransferases ACP-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
DPP6 N-terminal domain-like Autotransporter 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
"Winged helix" DNA-binding domain Calcium-dependent phosphotriesterase 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
PHP domain-like AF1531-like 11
Bet v1-like Bet v1-like 11
Phage tail proteins gp5 N-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins PheT/TilS domain 11
TGS-like ThrRS/AlaRS common domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Isochorismatase-like hydrolases ACP-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
LysM domain Duplicated hybrid motif 11
Nudix "Winged helix" DNA-binding domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
E set domains E set domains 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Rhodanese/Cell cycle control phosphatase Acyl-CoA N-acyltransferases (Nat) 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Ribonuclease H-like RuvA domain 2-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Putative DNA-binding domain C-terminal effector domain of the bipartite response regulators 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PIN domain-like Ribonuclease H-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
DeoB insert domain-like Alkaline phosphatase-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
HD-domain/PDEase-like ACT-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
DNA clamp DNA clamp 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidylyl transferase tRNA-binding arm 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
YrdC/RibB RibA-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
ALDH-like ALDH-like 11
Six-hairpin glycosidases MurD-like peptide ligases, catalytic domain 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain LysM domain 11
Nucleic acid-binding proteins GAD domain-like 11
GAF domain-like Calcium-dependent phosphotriesterase 11
ADC synthase Class I glutamine amidotransferase-like 11
Homodimeric domain of signal transducing histidine kinase C-terminal effector domain of the bipartite response regulators 11
YlxR-like L30e-like 11
Radical SAM enzymes RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
RmlC-like cupins RmlC-like cupins 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Translation proteins PRC-barrel domain 11
"Winged helix" DNA-binding domain HRDC-like 11
YebC-like PFL-like glycyl radical enzymes 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like 11
GAF domain-like Phosphohistidine domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
DNA-glycosylase Nudix 11
Single hybrid motif TK C-terminal domain-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Tex N-terminal region-like RuvA domain 2-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
TGS-like ACT-like 11
Galactose mutarotase-like (Trans)glycosidases 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
alpha-helical ferredoxin Nucleotide-binding domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-linked oxidoreductase 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
HD-domain/PDEase-like TGS-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like RuvA domain 2-like 11
PPK N-terminal domain-like PHP14-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
4Fe-4S ferredoxins ADC-like 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Phage tail proteins Phage tail proteins 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
PreATP-grasp domain Methylglyoxal synthase-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
beta-Roll Concanavalin A-like lectins/glucanases 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
post-HMGL domain-like Single hybrid motif 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins BRCT domain 11
Cadherin-like Fibronectin type III 11
PGBD-like PGBD-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
CarD-like TRCF domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Zn-dependent exopeptidases P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
PUA domain-like alpha/beta knot 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Nucleotidyltransferase Nucleotidyltransferase 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Acyl-CoA N-acyltransferases (Nat) TPR-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
2Fe-2S ferredoxin-like ADC-like 11
NAD(P)-binding Rossmann-fold domains Nucleotide-diphospho-sugar transferases 11
RuvA domain 2-like BRCT domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Fibronectin type III Autotransporter 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Aldolase Single hybrid motif 11
Fic-like "Winged helix" DNA-binding domain 11
EAL domain-like CBS-domain pair 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
S-adenosyl-L-methionine-dependent methyltransferases C-terminal effector domain of the bipartite response regulators 11
TGS-like Class II aaRS ABD-related 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
HAMP domain-like GAF domain-like 11
Cupredoxins Cupredoxins 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleotidyltransferase TGS-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
TPR-like TPR-like 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 11
HRDC-like HRDC-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Nucleotide-binding domain Nucleotide-binding domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain post-HMGL domain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Serine metabolism enzymes domain ACT-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
LmbE-like Class I glutamine amidotransferase-like 11
TGS-like Class II aaRS and biotin synthetases 11
Flavoproteins Riboflavin synthase domain-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
PreATP-grasp domain Aldolase 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
Methylesterase CheB, C-terminal domain C-terminal effector domain of the bipartite response regulators 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Poly A polymerase C-terminal region-like ACT-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
HCP-like PGBD-like 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotide-diphospho-sugar transferases Galactose mutarotase-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Rudiment single hybrid motif Aldolase 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Metallo-dependent phosphatases LysM domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase C-terminal effector domain of the bipartite response regulators 11
AhpD-like AhpD-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Pseudouridine synthase PUA domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Folate-binding domain TrmE connector domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Carbamate kinase-like ACT-like 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Apolipoprotein A-I Apolipoprotein A-I 11
Translation proteins Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
PreATP-grasp domain PreATP-grasp domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Translation proteins Ribosomal protein S5 domain 2-like 11
PLP-dependent transferases PLP-dependent transferases 11
FliG FliG 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Pectin lyase-like Pectin lyase-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Carbamate kinase-like PUA domain-like 11
Acid phosphatase/Vanadium-dependent haloperoxidase Pectin lyase-like 11
CheY-like HD-domain/PDEase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
LysM domain LysM domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Putative DNA-binding domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Cadherin-like Autotransporter 11
"Winged helix" DNA-binding domain Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
(Phosphotyrosine protein) phosphatases II Metallo-hydrolase/oxidoreductase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
HCP-like TPR-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Cyclophilin-like Cyclophilin-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
GroES-like GroES-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Prim-pol domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ribosomal protein L6 Ribosomal protein L6 11
"Winged helix" DNA-binding domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
FMN-binding split barrel Riboflavin synthase domain-like 11
FAD-linked reductases, C-terminal domain Folate-binding domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Thioredoxin-like TPR-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
gp5 N-terminal domain-like Phage fibre proteins 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Six-hairpin glycosidases MurD-like peptide ligases, peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NTF2-like FAD/NAD(P)-binding domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain C-terminal effector domain of the bipartite response regulators 11
Phage tail proteins Phage fibre proteins 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Hairpin loop containing domain-like TPR-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Periplasmic binding protein-like II ACT-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
TerB-like Chaperone J-domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
RuvA domain 2-like JAB1/MPN domain 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PHP14-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Cadherin-like Cadherin-like 11

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