SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Marinomonas mediterranea MMB-1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

745 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 742
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3321
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2613
Nucleotide cyclase EAL domain-like 259
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 224
Homeodomain-like Homeodomain-like 209
P-loop containing nucleoside triphosphate hydrolases MOP-like 182
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 175
CheY-like C-terminal effector domain of the bipartite response regulators 153
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 146
Thioredoxin-like GST C-terminal domain-like 141
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 141
PYP-like sensor domain (PAS domain) Nucleotide cyclase 137
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 139
Actin-like ATPase domain Actin-like ATPase domain 124
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 122
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1212
MetI-like MetI-like 113
GroES-like NAD(P)-binding Rossmann-fold domains 112
Homodimeric domain of signal transducing histidine kinase CheY-like 1111
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 101
P-loop containing nucleoside triphosphate hydrolases CheY-like 93
PYP-like sensor domain (PAS domain) EAL domain-like 94
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 93
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 95
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 99
Thiolase-like Thiolase-like 92
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 84
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 83
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 85
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 85
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 71
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 74
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 77
CheY-like CheY-like 77
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 75
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 74
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 74
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 74
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 76
Acetyl-CoA synthetase-like ACP-like 77
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 74
CoA-dependent acyltransferases ACP-like 77
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
Regulatory protein AraC Homeodomain-like 63
"Winged helix" DNA-binding domain GAF domain-like 61
"Winged helix" DNA-binding domain PLP-dependent transferases 62
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 62
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 63
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
CheY-like Histidine-containing phosphotransfer domain, HPT domain 66
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 65
CoA-dependent acyltransferases CoA-dependent acyltransferases 66
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 63
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 63
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 62
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 63
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 64
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 53
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 53
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 55
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
ISP domain Bet v1-like 51
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 52
PYP-like sensor domain (PAS domain) CheY-like 55
CheY-like Homeodomain-like 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
CheY-like Nucleotide cyclase 53
Alpha-L RNA-binding motif Pseudouridine synthase 52
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
lambda repressor-like DNA-binding domains RmlC-like cupins 41
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 44
(Trans)glycosidases Glycosyl hydrolase domain 43
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 42
Translation proteins EF-G C-terminal domain-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
ACP-like ACP-like 44
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
Homeodomain-like SIS domain 41
PreATP-grasp domain Rudiment single hybrid motif 42
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 41
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 43
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 43
Folate-binding domain Aminomethyltransferase beta-barrel domain 32
PDZ domain-like ClpP/crotonase 31
HD-domain/PDEase-like Nucleotidyltransferase 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
ACT-like ACT-like 32
TPR-like TPR-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Class I glutamine amidotransferase-like Homeodomain-like 31
RuvA domain 2-like Nucleic acid-binding proteins 33
FKBP-like Triger factor/SurA peptide-binding domain-like 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
RmlC-like cupins Homeodomain-like 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
CheY-like TPR-like 33
ACT-like Formyltransferase 31
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
ACP-like alpha/beta-Hydrolases 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Aldolase AFP III-like domain 32
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
Translation proteins ThrRS/AlaRS common domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Phage tail proteins Phage tail proteins 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Heme-dependent peroxidases Heme-dependent peroxidases 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
"Winged helix" DNA-binding domain Chorismate lyase-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Cytochrome c Cytochrome c 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Ribonuclease H-like DNA/RNA polymerases 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 21
GAF domain-like Homeodomain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
E set domains (Trans)glycosidases 22
Zinc beta-ribbon Zinc beta-ribbon 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Periplasmic binding protein-like II GlnB-like 21
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
L30e-like alpha/beta knot 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Periplasmic binding protein-like II Nucleotide cyclase 22
CheW-like CheY-like 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
PDZ domain-like PDZ domain-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 21
PYP-like sensor domain (PAS domain) Homeodomain-like 22
CoA-dependent acyltransferases alpha/beta-Hydrolases 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 21
CheY-like Methylesterase CheB, C-terminal domain 21
Single hybrid motif CoA-dependent acyltransferases 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Phage tail proteins Phage fibre proteins 22
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 21
Phage tail proteins gp5 N-terminal domain-like 22
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Homodimeric domain of signal transducing histidine kinase CheW-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
FAD/NAD(P)-binding domain Folate-binding domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
CheY-like HD-domain/PDEase-like 22
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
LysM domain LysM domain 22
Sensory domain-like PYP-like sensor domain (PAS domain) 22
Nucleotidyltransferase TGS-like 22
CheY-like EAL domain-like 22
E set domains E set domains 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
GAF domain-like CheY-like 22
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
Periplasmic binding protein-like II ACT-like 22
Zinc beta-ribbon Prokaryotic SH3-related domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
"Winged helix" DNA-binding domain Actin-like ATPase domain 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
HD-domain/PDEase-like ACT-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
EAL domain-like HD-domain/PDEase-like 21
PUA domain-like Ribosomal protein S5 domain 2-like 22
Homeodomain-like Probable bacterial effector-binding domain 21
HAMP domain-like Nucleotide cyclase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
HD-domain/PDEase-like TGS-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Trypsin-like serine proteases PDZ domain-like 22
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Aldolase post-HMGL domain-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Carbamate kinase-like ACT-like 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
cAMP-binding domain-like cAMP-binding domain-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
gp5 N-terminal domain-like Phage fibre proteins 22
cAMP-binding domain-like SGNH hydrolase 22
GAF domain-like Nucleotide cyclase 22
Single hybrid motif Single hybrid motif 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
Nucleotidyltransferase ACT-like 22
PYP-like sensor domain (PAS domain) GAF domain-like 22
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Protein kinase-like (PK-like) C-type lectin-like 11
E set domains Glycosyl hydrolase domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Fibronectin type III Pectin lyase-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
TATA-box binding protein-like DNA-glycosylase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Putative isomerase YbhE YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
NTF2-like NTF2-like 11
Outer arm dynein light chain 1 Protein kinase-like (PK-like) 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases PRTase-like 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
CheC-like Surface presentation of antigens (SPOA) 11
Nucleic acid-binding proteins PheT/TilS domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Homeodomain-like DNA-glycosylase 11
PHP14-like Phospholipase D/nuclease 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
RuvA domain 2-like JAB1/MPN domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Hsp33 domain HSP33 redox switch-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Ribonuclease H-like RuvA domain 2-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
TSP type-3 repeat OmpA-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
GroEL equatorial domain-like GroEL apical domain-like 11
AFP III-like domain Xylose isomerase-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
EAL domain-like CBS-domain pair 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
PreATP-grasp domain Single hybrid motif 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
PurS-like FGAM synthase PurL, linker domain 11
Chorismate mutase II ACT-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Aldolase Xylose isomerase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
DNA clamp DNA clamp 11
Trigger factor ribosome-binding domain FKBP-like 11
cAMP-binding domain-like Glycerol-3-phosphate (1)-acyltransferase 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
MFS general substrate transporter MFS general substrate transporter 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked oxidoreductase ALDH-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Protein kinase-like (PK-like) Histidine-containing phosphotransfer domain, HPT domain 11
Pectin lyase-like Pectin lyase-like 11
Protein kinase-like (PK-like) CheY-like 11
PilZ domain-like PilZ domain-like 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
Periplasmic binding protein-like II Voltage-gated potassium channels 11
Rudiment single hybrid motif Single hybrid motif 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Lysozyme-like LysM domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
vWA-like TPR-like 11
MalF N-terminal region-like MetI-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
EspE N-terminal domain-like CheC-like 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
post-HMGL domain-like Single hybrid motif 11
Barwin-like endoglucanases Sporulation related repeat 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
E set domains alpha/beta-Hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Lamin A/C globular tail domain His-Me finger endonucleases 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
AhpD-like Dimeric alpha+beta barrel 11
PK beta-barrel domain-like PK C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
NTF2-like FAD/NAD(P)-binding domain 11
TGS-like Class II aaRS ABD-related 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Protease propeptides/inhibitors Subtilisin-like 11
PPK N-terminal domain-like PHP14-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Globin-like Riboflavin synthase domain-like 11
Zn-dependent exopeptidases LysM domain 11
PLP-dependent transferases PLP-dependent transferases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
FKBP-like FKBP-like 11
HRDC-like HRDC-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Ammonium transporter Nucleotide cyclase 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
CBS-domain pair Xylose isomerase-like 11
H-NS histone-like proteins H-NS histone-like proteins 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
CBS-domain pair Aldolase 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Integrin alpha N-terminal domain Colicin D/E5 nuclease domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Ricin B-like lectins Fibronectin type III 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Cadherin-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nucleotidylyl transferase tRNA-binding arm 11
Phase 1 flagellin Phase 1 flagellin 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Tex N-terminal region-like RuvA domain 2-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Protein kinase-like (PK-like) GAF domain-like 11
PH0987 N-terminal domain-like Cyclophilin-like 11
WD40 repeat-like MetI-like 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PhoU-like Protein kinase-like (PK-like) 11
Homeodomain-like TATA-box binding protein-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Putative isomerase YbhE Cadherin-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Ammonium transporter EAL domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Cupredoxins Cupredoxins 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Protein kinase-like (PK-like) TPR-like 11
Aldolase Single hybrid motif 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
TGS-like Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
Nudix "Winged helix" DNA-binding domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
OMPA-like TSP type-3 repeat 11
GAF domain-like HD-domain/PDEase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
CBS-domain pair Nucleotide cyclase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
CBS-domain pair MgtE membrane domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Translation proteins PRC-barrel domain 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
PIN domain-like DNA/RNA polymerases 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
YajQ-like YajQ-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PheT/TilS domain Putative DNA-binding domain 11
Nucleotide cyclase TPR-like 11
Nucleic acid-binding proteins GAD domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PurS-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Histidine-containing phosphotransfer domain, HPT domain 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Thioredoxin-like Thioredoxin-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
RNase III domain-like dsRNA-binding domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PreATP-grasp domain PreATP-grasp domain 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
PIN domain-like Ribonuclease H-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Ribokinase-like Thiamin phosphate synthase 11
PurS-like PurM N-terminal domain-like 11
Acetyl-CoA synthetase-like Clavaminate synthase-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
HAMP domain-like CheY-like 11
PUA domain-like alpha/beta knot 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
YrdC/RibB RibA-like 11
Ammonium transporter Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
SH3-domain SH3-domain 11
FliG FliG 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Thermostable phytase (3-phytase) Thermostable phytase (3-phytase) 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Class II aaRS and biotin synthetases GAD domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Periplasmic binding protein-like II 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
DNA-glycosylase Nudix 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
NTF2-like Sec-C motif 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Ricin B-like lectins Pectin lyase-like 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair AFP III-like domain 11
ACT-like Homeodomain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
GIY-YIG endonuclease RuvA domain 2-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Putative DNA-binding domain Translation proteins 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Ribonuclease H-like HRDC-like 11
Nudix Nudix 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
CoA-dependent acyltransferases Clavaminate synthase-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
YjeF N-terminal domain-like Ribokinase-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
PHP domain-like AF1531-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
GroES-like GroES-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Thiolase-like ACP-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
TGS-like ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
FabD/lysophospholipase-like ACP-like 11
ACP-like Clavaminate synthase-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Zinc beta-ribbon DNA primase core 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 11
TGS-like ACT-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
TerB-like Chaperone J-domain 11
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Glycerol-3-phosphate (1)-acyltransferase SGNH hydrolase 11
Ribokinase-like Nucleotidylyl transferase 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Ammonium transporter PYP-like sensor domain (PAS domain) 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Subtilisin-like Integrin alpha N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Histidine-containing phosphotransfer domain, HPT domain HD-domain/PDEase-like 11
Periplasmic binding protein-like II EAL domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
P-loop containing nucleoside triphosphate hydrolases HCP-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
TSP type-3 repeat TSP type-3 repeat 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Formyltransferase FMT C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Calcium ATPase, transmembrane domain M HAD-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Thiolase-like FabD/lysophospholipase-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Protease propeptides/inhibitors Integrin alpha N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
EspE N-terminal domain-like EspE N-terminal domain-like 11
Flagellar hook protein flgE Flagellar hook protein flgE 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein L6 Ribosomal protein L6 11
Translation proteins Translation proteins 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Nucleic acid-binding proteins BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
GroEL-intermediate domain like GroEL apical domain-like 11
HAMP domain-like EAL domain-like 11
CarD-like TRCF domain-like 11
HMA, heavy metal-associated domain HAD-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
CheY-like CheC-like 11
Isochorismatase-like hydrolases ACP-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Tex N-terminal region-like Ribonuclease H-like 11
Calcium ATPase, transduction domain A HAD-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Integrin alpha N-terminal domain alpha/beta-Hydrolases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
RuvA domain 2-like RuvA domain 2-like 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
"Winged helix" DNA-binding domain Ribokinase-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Dimeric alpha+beta barrel Acyl-CoA N-acyltransferases (Nat) 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
PurS-like Class I glutamine amidotransferase-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Lamin A/C globular tail domain Lamin A/C globular tail domain 11
Carbamate kinase-like PUA domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Copper amine oxidase, domain N Family 10 polysaccharide lyase 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
ClpP/crotonase ClpP/crotonase 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
GAF domain-like Phosphohistidine domain 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain HCP-like 11
CheY-like PP2C-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Lamin A/C globular tail domain DNase I-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Homeodomain-like Ribonuclease H-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Protein kinase-like (PK-like) Nucleotide cyclase 11
OMPA-like OmpA-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]