SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Taylorella equigenitalis MCE9

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

461 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1912
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 98
Cytochrome c Cytochrome c 86
Adhesin YadA, collagen-binding domain Pili subunits 87
Actin-like ATPase domain Actin-like ATPase domain 73
P-loop containing nucleoside triphosphate hydrolases Translation proteins 75
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 62
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 63
HCP-like HCP-like 52
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 52
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 53
gp5 N-terminal domain-like Phage fibre proteins 54
CheY-like C-terminal effector domain of the bipartite response regulators 51
Translation proteins EF-G C-terminal domain-like 43
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
ACT-like ACT-like 44
FKBP-like Triger factor/SurA peptide-binding domain-like 44
Phage tail proteins gp5 N-terminal domain-like 43
Phage tail proteins Phage fibre proteins 43
Phage tail proteins Phage tail proteins 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
Pentapeptide repeat-like Pentapeptide repeat-like 42
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 32
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 32
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
MetI-like MetI-like 31
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 33
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 32
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 32
PLP-binding barrel Alanine racemase C-terminal domain-like 32
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 32
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
PreATP-grasp domain Rudiment single hybrid motif 31
Nucleotidyltransferase Poly A polymerase C-terminal region-like 33
PurM N-terminal domain-like PurM C-terminal domain-like 33
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 31
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
OMPA-like OMPA-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HD-domain/PDEase-like Nucleotidyltransferase 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Trypsin-like serine proteases PDZ domain-like 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Nucleic acid-binding proteins RuvA domain 2-like 22
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 22
Pectin lyase-like Autotransporter 22
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
Single hybrid motif CoA-dependent acyltransferases 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Nucleotidyltransferase TGS-like 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
ARM repeat ARM repeat 22
Nucleotidyltransferase ACT-like 22
GroES-like NAD(P)-binding Rossmann-fold domains 21
PDZ domain-like ClpP/crotonase 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Thioredoxin-like GST C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
CheY-like Homeodomain-like 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
L30e-like alpha/beta knot 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
HD-domain/PDEase-like TGS-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
PDZ domain-like PDZ domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Formyltransferase FMT C-terminal domain-like 11
DNA clamp DNA clamp 11
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases PLP-dependent transferases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
MgtE N-terminal domain-like CBS-domain pair 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Lysozyme-like LysM domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
GroEL equatorial domain-like GroEL apical domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
TGS-like Class II aaRS ABD-related 11
YrdC/RibB RibA-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
YajQ-like YajQ-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Nucleotidylyl transferase tRNA-binding arm 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
PurS-like Class I glutamine amidotransferase-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Nucleotidyltransferase Nucleotidyltransferase 11
CarD-like TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
DNA methylase specificity domain DNA methylase specificity domain 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
FKBP-like FKBP-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
CBS-domain pair MgtE membrane domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
TGS-like Class II aaRS and biotin synthetases 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase YegP-like 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
FAD-linked oxidoreductase ALDH-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
HAD-like Calcium ATPase, transmembrane domain M 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
4Fe-4S ferredoxins ADC-like 11
PurS-like FGAM synthase PurL, linker domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PreATP-grasp domain PreATP-grasp domain 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Thioredoxin-like Peptide methionine sulfoxide reductase 11
MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Translation proteins ThrRS/AlaRS common domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Nucleic acid-binding proteins BRCT domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
PurS-like PurM N-terminal domain-like 11
Chorismate mutase II ACT-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Thioredoxin-like Thioredoxin-like 11
PIN domain-like Ribonuclease H-like 11
Periplasmic binding protein-like II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Ribonuclease H-like DNA/RNA polymerases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
PUA domain-like alpha/beta knot 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
HprK N-terminal domain-like PEP carboxykinase-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
TGS-like ThrRS/AlaRS common domain 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Tropomyosin Pili subunits 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Clc chloride channel CBS-domain pair 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Actin-like ATPase domain Acyl-CoA N-acyltransferases (Nat) 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
PIN domain-like DNA/RNA polymerases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Six-hairpin glycosidases Galactose-binding domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Nudix Thiamin phosphate synthase 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
RuvA domain 2-like JAB1/MPN domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
GIY-YIG endonuclease RuvA domain 2-like 11
HD-domain/PDEase-like ACT-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Nucleotidylyl transferase Riboflavin kinase-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Translation proteins PRC-barrel domain 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
RuvA domain 2-like BRCT domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Macro domain-like Zn-dependent exopeptidases 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
PurS-like PurM C-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Poly A polymerase C-terminal region-like ACT-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PheT/TilS domain Putative DNA-binding domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
HMA, heavy metal-associated domain HAD-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
beta-Roll Autotransporter 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
RNase III domain-like dsRNA-binding domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Calcium ATPase, transduction domain A HAD-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Nucleic acid-binding proteins GAD domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Cysteine proteinases Galactose-binding domain-like 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Trigger factor ribosome-binding domain FKBP-like 11
Carbamate kinase-like ACT-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Aldolase post-HMGL domain-like 11
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Lysozyme-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Pectin lyase-like Pectin lyase-like 11
2Fe-2S ferredoxin-like ADC-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
MurE/MurF N-terminal domain MurE/MurF N-terminal domain 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
"Winged helix" DNA-binding domain GAF domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Phage fibre proteins Phage fibre proteins 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
ACT-like Formyltransferase 11
Hsp33 domain HSP33 redox switch-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
ISP domain Bet v1-like 11
Cysteine proteinases Six-hairpin glycosidases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Galactose mutarotase-like (Trans)glycosidases 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
TGS-like ACT-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
(Trans)glycosidases Glycosyl hydrolase domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Autotransporter Autotransporter 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Cupredoxins Cupredoxins 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Thioredoxin-like Mss4-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
beta-Roll Pectin lyase-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Thiolase-like Thiolase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Class II aaRS and biotin synthetases Translation proteins 11
Class II aaRS and biotin synthetases GAD domain-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Porins Porins 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Translation proteins Translation proteins 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Zinc beta-ribbon DNA primase core 11
Peptide methionine sulfoxide reductase Mss4-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11

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