SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Serratia symbiotica str. 'Cinara cedri'

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).

Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

324 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 108
Actin-like ATPase domain Actin-like ATPase domain 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases Translation proteins 66
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 64
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
Phospholipase D/nuclease Phospholipase D/nuclease 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Alpha-L RNA-binding motif Pseudouridine synthase 31
Translation proteins EF-G C-terminal domain-like 33
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
PreATP-grasp domain Rudiment single hybrid motif 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Thiolase-like Thiolase-like 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 21
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
PDZ domain-like PDZ domain-like 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Phoshotransferase/anion transport protein HPr-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
RNase III domain-like dsRNA-binding domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
L30e-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
ClpP/crotonase ClpP/crotonase 11
PurS-like PurM N-terminal domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PHP14-like Phospholipase D/nuclease 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PapD-like Periplasmic chaperone C-domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Ribokinase-like Nucleotidylyl transferase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Pseudouridine synthase PUA domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
MgtE N-terminal domain-like CBS-domain pair 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Actin-like ATPase domain HD-domain/PDEase-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
RuvA domain 2-like BRCT domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
TGS-like Class II aaRS ABD-related 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleic acid-binding proteins RuvA domain 2-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
TGS-like Class II aaRS and biotin synthetases 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Putative DNA-binding domain Translation proteins 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Zinc beta-ribbon DNA primase core 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Formyltransferase FMT C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
PurS-like FGAM synthase PurL, linker domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
CBS-domain pair MgtE membrane domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
MFS general substrate transporter Proline/betaine transporter ProP, C-terminal cytoplasmic domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
TGS-like ThrRS/AlaRS common domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Trypsin-like serine proteases PDZ domain-like 11
H-NS histone-like proteins H-NS histone-like proteins 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Band 7/SPFH domain Band 7/SPFH domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase tRNA-binding arm 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Single hybrid motif Single hybrid motif 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Trigger factor ribosome-binding domain FKBP-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
PIN domain-like Ribonuclease H-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
DNA clamp DNA clamp 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
FKBP-like FKBP-like 11
PurS-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Glycoside hydrolase/deacetylase Glycoside hydrolase/deacetylase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Glucose permease domain IIB Duplicated hybrid motif 11
Translation proteins ThrRS/AlaRS common domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
DeoB insert domain-like Alkaline phosphatase-like 11
Single hybrid motif CoA-dependent acyltransferases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
OMPA-like OmpA-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
PreATP-grasp domain PreATP-grasp domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleic acid-binding proteins PheT/TilS domain 11
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
CheY-like C-terminal effector domain of the bipartite response regulators 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Nucleic acid-binding proteins GAD domain-like 11
Translation proteins Translation proteins 11
DNA primase core DNA primase DnaG, C-terminal domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Zinc beta-ribbon Zinc beta-ribbon 11
PTS system IIB component-like PTS system IIB component-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
CarD-like TRCF domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Translation proteins PRC-barrel domain 11
Nucleic acid-binding proteins BRCT domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Flavoproteins Riboflavin synthase domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PurS-like PurM C-terminal domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
PIN domain-like DNA/RNA polymerases 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
PPK N-terminal domain-like PHP14-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
MetI-like MetI-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]