SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Candidatus Pelagibacter sp. IMCC9063

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

340 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 102
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 77
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 72
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 63
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 63
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 52
Actin-like ATPase domain Actin-like ATPase domain 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 42
P-loop containing nucleoside triphosphate hydrolases Translation proteins 44
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 43
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 32
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 33
PreATP-grasp domain Rudiment single hybrid motif 31
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
CheY-like C-terminal effector domain of the bipartite response regulators 31
PLP-binding barrel Alanine racemase C-terminal domain-like 31
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 33
Aconitase iron-sulfur domain LeuD/IlvD-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Translation proteins EF-G C-terminal domain-like 22
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
GroES-like NAD(P)-binding Rossmann-fold domains 21
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Formyltransferase FMT C-terminal domain-like 21
Aldolase AFP III-like domain 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
3-carboxy-cis,cis-mucoante lactonizing enzyme Autotransporter 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Single hybrid motif CoA-dependent acyltransferases 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
Thiolase-like Thiolase-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
MetI-like MetI-like 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 21
ACT-like ACT-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleotidylyl transferase tRNA-binding arm 11
PreATP-grasp domain PreATP-grasp domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Class II aaRS and biotin synthetases GAD domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
YajQ-like YajQ-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
TGS-like Class II aaRS ABD-related 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
PLP-dependent transferases PLP-dependent transferases 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Nucleic acid-binding proteins RuvA domain 2-like 11
Calcium-dependent phosphotriesterase Autotransporter 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
HD-domain/PDEase-like TGS-like 11
PDZ domain-like PDZ domain-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
Bacterial muramidases Lysozyme-like 11
Single hybrid motif Single hybrid motif 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
MgtE N-terminal domain-like CBS-domain pair 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Autotransporter 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
TGS-like ThrRS/AlaRS common domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PheT/TilS domain Putative DNA-binding domain 11
Thioredoxin-like GST C-terminal domain-like 11
Calcium-dependent phosphotriesterase Quinoprotein alcohol dehydrogenase-like 11
YrdC/RibB RibA-like 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
TGS-like Class II aaRS and biotin synthetases 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
GroEL-intermediate domain like GroEL apical domain-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Translation proteins ThrRS/AlaRS common domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
PIN domain-like DNA/RNA polymerases 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotidyltransferase ACT-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Serine metabolism enzymes domain ACT-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Single hybrid motif TK C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Zinc beta-ribbon DNA primase core 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Ribonuclease H-like HRDC-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Nucleic acid-binding proteins GAD domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PreATP-grasp domain Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains FMN-binding split barrel 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
C-type lectin-like Autotransporter 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Carbamate kinase-like PUA domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like FMN-binding split barrel 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FKBP-like Triger factor/SurA peptide-binding domain-like 11
PUA domain-like alpha/beta knot 11
Translation proteins Translation proteins 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
TGS-like ACT-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Trypsin-like serine proteases PDZ domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
DNA clamp DNA clamp 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Nucleotidyltransferase TGS-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
HD-domain/PDEase-like ACT-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
CBS-domain pair MgtE membrane domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
CheY-like Homeodomain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins BRCT domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like BRCT domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Macro domain-like Zn-dependent exopeptidases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
S-adenosylmethionine decarboxylase S-adenosyl-L-methionine-dependent methyltransferases 11
Trigger factor ribosome-binding domain FKBP-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PIN domain-like Ribonuclease H-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Thioredoxin-like DinB/YfiT-like putative metalloenzymes 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
PDZ domain-like ClpP/crotonase 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Carbamate kinase-like ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II ACT-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11

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