SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Methylobacterium chloromethanicum CM4

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

739 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6540
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3929
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 3936
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 3930
Homodimeric domain of signal transducing histidine kinase CheY-like 3627
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 361
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 3526
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3316
PYP-like sensor domain (PAS domain) CheY-like 2721
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 248
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 237
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 237
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 237
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 237
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 237
CheY-like C-terminal effector domain of the bipartite response regulators 213
Nucleotide cyclase EAL domain-like 197
NAD(P)-binding Rossmann-fold domains GroES-like 193
cAMP-binding domain-like "Winged helix" DNA-binding domain 183
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 183
Thioredoxin-like GST C-terminal domain-like 171
PYP-like sensor domain (PAS domain) GAF domain-like 1717
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 173
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 164
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 153
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 156
PYP-like sensor domain (PAS domain) Nucleotide cyclase 147
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1313
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 124
PYP-like sensor domain (PAS domain) EAL domain-like 125
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 124
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 111
GAF domain-like CheY-like 1111
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 102
Actin-like ATPase domain Actin-like ATPase domain 103
GAF domain-like Homodimeric domain of signal transducing histidine kinase 1010
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 96
Homeodomain-like Homeodomain-like 93
CheY-like CheY-like 97
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 93
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 82
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 83
CheY-like P-loop containing nucleoside triphosphate hydrolases 83
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 85
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 84
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 82
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 85
beta-Roll beta-Roll 76
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 72
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 71
CheY-like Homeodomain-like 72
HAD-like Calcium ATPase, transmembrane domain M 65
Lysozyme-like beta-lactamase/transpeptidase-like 64
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 63
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 61
Thiolase-like Thiolase-like 61
Trypsin-like serine proteases PDZ domain-like 63
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 62
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Calcium ATPase, transduction domain A HAD-like 65
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 61
GAF domain-like GAF domain-like 55
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 51
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 52
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
MoeA N-terminal region -like MoeA C-terminal domain-like 52
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
GAF domain-like Nucleotide cyclase 55
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 54
(Trans)glycosidases Glycosyl hydrolase domain 54
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 52
PreATP-grasp domain Rudiment single hybrid motif 53
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 52
Alpha-L RNA-binding motif Pseudouridine synthase 53
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 53
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
Class I glutamine amidotransferase-like Homeodomain-like 51
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 41
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 42
PLP-binding barrel Alanine racemase C-terminal domain-like 42
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 43
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 42
Phospholipase D/nuclease Phospholipase D/nuclease 43
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 43
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 44
P-loop containing nucleoside triphosphate hydrolases MOP-like 41
CheY-like HD-domain/PDEase-like 42
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Histidine-containing phosphotransfer domain, HPT domain CheY-like 44
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
Cytochrome c Cytochrome c 42
ISP domain Bet v1-like 41
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
PDZ domain-like PDZ domain-like 41
E set domains (Trans)glycosidases 43
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 44
PGBD-like L,D-transpeptidase catalytic domain-like 42
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 41
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
GAF domain-like EAL domain-like 33
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 33
NAD(P)-binding Rossmann-fold domains ACT-like 33
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 32
Folate-binding domain Aminomethyltransferase beta-barrel domain 32
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 31
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 31
Galactose mutarotase-like Six-hairpin glycosidases 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Lysozyme-like PGBD-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
4Fe-4S ferredoxins ADC-like 33
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 33
FKBP-like Triger factor/SurA peptide-binding domain-like 33
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 32
Oxidoreductase molybdopterin-binding domain E set domains 31
ACT-like ACT-like 33
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 33
Nucleic acid-binding proteins RuvA domain 2-like 33
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 33
Translation proteins EF-G C-terminal domain-like 33
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 33
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Resolvase-like Homeodomain-like 31
Heme-dependent peroxidases beta-Roll 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
lambda repressor-like DNA-binding domains RmlC-like cupins 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
(Trans)glycosidases (Trans)glycosidases 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Galactose mutarotase-like E set domains 31
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 33
E set domains Glycosyl hydrolase domain 32
Nqo1 middle domain-like Nqo1C-terminal domain-like 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 22
CoA-dependent acyltransferases ACP-like 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
HCP-like HCP-like 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
FliG FliG 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Thioredoxin-like Nqo1 middle domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Ferritin-like Calcium ATPase, transmembrane domain M 21
PH0987 N-terminal domain-like Cyclophilin-like 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
CheY-like cAMP-binding domain-like 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 21
GroEL equatorial domain-like GroEL apical domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nudix "Winged helix" DNA-binding domain 22
Toll/Interleukin receptor TIR domain Quinoprotein alcohol dehydrogenase-like 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 22
GroEL equatorial domain-like GroEL-intermediate domain like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Urease, gamma-subunit Urease, beta-subunit 21
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 22
Thioredoxin-like Nqo1 FMN-binding domain-like 22
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 22
CheC-like Surface presentation of antigens (SPOA) 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
"Winged helix" DNA-binding domain GAF domain-like 21
Ferritin-like HAD-like 21
Formyltransferase FMT C-terminal domain-like 21
CheW-like CheY-like 22
TPR-like TPR-like 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Ferritin-like Calcium ATPase, transduction domain A 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
"Winged helix" DNA-binding domain PLP-dependent transferases 21
2Fe-2S ferredoxin-like ADC-like 22
Acetyl-CoA synthetase-like ACP-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 22
FAD/NAD(P)-binding domain Folate-binding domain 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
beta-Roll Concanavalin A-like lectins/glucanases 22
P-loop containing nucleoside triphosphate hydrolases CarD-like 22
L30e-like alpha/beta knot 21
CheY-like Nucleotide cyclase 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
GroEL-intermediate domain like GroEL apical domain-like 21
PYP-like sensor domain (PAS domain) lambda repressor-like DNA-binding domains 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PP2C-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Pectin lyase-like beta-Roll 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
Metalloproteases ("zincins"), catalytic domain beta-Roll 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Single hybrid motif CoA-dependent acyltransferases 22
Phase 1 flagellin Phase 1 flagellin 21
Nucleotidyltransferase ACT-like 22
PK beta-barrel domain-like PK C-terminal domain-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Cupredoxins Cupredoxins 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Rudiment single hybrid motif Single hybrid motif 22
CarD-like TRCF domain-like 22
CoA-dependent acyltransferases CoA-dependent acyltransferases 22
HlyD-like secretion proteins HlyD-like secretion proteins 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
TrpR-like Ribonuclease H-like 21
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 22
Metalloproteases ("zincins"), catalytic domain Concanavalin A-like lectins/glucanases 22
CheY-like Methylesterase CheB, C-terminal domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
HMA, heavy metal-associated domain HAD-like 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 21
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 21
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Nucleotide cyclase Nucleotide cyclase 22
Periplasmic binding protein-like II NosL/MerB-like 21
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Galactose oxidase, central domain E set domains 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Thioredoxin-like Nqo1C-terminal domain-like 22
PreATP-grasp domain Single hybrid motif 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
CheY-like "Winged helix" DNA-binding domain 21
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
Nucleotidylyl transferase tRNA-binding arm 11
Quinoprotein alcohol dehydrogenase-like DPP6 N-terminal domain-like 11
FAD-linked oxidoreductase ALDH-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
DeoB insert domain-like Alkaline phosphatase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
DNase I-like beta-Roll 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Toll/Interleukin receptor TIR domain C-type lectin-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
HRDC-like HRDC-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Ribonuclease H-like HRDC-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
HAMP domain-like EAL domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
GAF domain-like Phosphohistidine domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, peptide-binding domain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Aldolase SIS domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Clc chloride channel CBS-domain pair 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
L domain-like Protein kinase-like (PK-like) 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
HD-domain/PDEase-like ACT-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
PheT/TilS domain Putative DNA-binding domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
ACP-like Trimeric LpxA-like enzymes 11
Ribonuclease H-like RuvA domain 2-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
PHP domain-like AF1531-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Toll/Interleukin receptor TIR domain DPP6 N-terminal domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Radical SAM enzymes RuvA domain 2-like 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
YWTD domain beta-Roll 11
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
PP2C-like Protein kinase-like (PK-like) 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Galactose oxidase, central domain YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Hsp33 domain HSP33 redox switch-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
beta-Barrel protease inhibitors beta-Barrel protease inhibitors 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Zinc beta-ribbon DNA primase core 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
PilZ domain-like PilZ domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Thioredoxin-like TPR-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Soluble quinoprotein glucose dehydrogenase Galactose-binding domain-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Aldolase AFP III-like domain 11
PUA domain-like alpha/beta knot 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
YWTD domain DNase I-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
PHP14-like Phospholipase D/nuclease 11
Globin-like Riboflavin synthase domain-like 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
Thiolase-like GroES-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
YebC-like PFL-like glycyl radical enzymes 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
beta-lactamase/transpeptidase-like Staphylococcal nuclease 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
YrdC/RibB RibA-like 11
YlxR-like L30e-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Nucleic acid-binding proteins GAD domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 11
Cupredoxins Cytochrome c 11
Carbamate kinase-like ACT-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
S-adenosyl-L-methionine-dependent methyltransferases GroES-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
YjeF N-terminal domain-like Ribokinase-like 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, catalytic domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
WD40 repeat-like Cytochrome c 11
Dihydropteroate synthetase-like Methionine synthase domain 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
Ricin B-like lectins E set domains 11
Ricin B-like lectins Galactose oxidase, central domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
RuvA domain 2-like BRCT domain 11
PreATP-grasp domain PreATP-grasp domain 11
Trigger factor ribosome-binding domain FKBP-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
YWTD domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Periplasmic binding protein-like II ACT-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
Thiolase-like FabD/lysophospholipase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
PPK N-terminal domain-like PHP14-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
FAD-binding/transporter-associated domain-like Molybdenum cofactor-binding domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Rubredoxin-like FAD/NAD(P)-binding domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
DNA-glycosylase Nudix 11
UROD/MetE-like Methionine synthase domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
CalX-like DNase I-like 11
YWTD domain Metallo-dependent phosphatases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
TGS-like Class II aaRS ABD-related 11
Class II aaRS and biotin synthetases GAD domain-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PreATP-grasp domain Cyclophilin-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Lysozyme-like Staphylococcal nuclease 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
PLP-dependent transferases PLP-dependent transferases 11
Nucleotidyltransferase TGS-like 11
TGS-like ThrRS/AlaRS common domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
CO dehydrogenase flavoprotein C-terminal domain-like CO dehydrogenase molybdoprotein N-domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
HD-domain/PDEase-like TGS-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
CalX-like Metallo-dependent phosphatases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Translation proteins PRC-barrel domain 11
Single hybrid motif TK C-terminal domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
TGS-like ACT-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
FabD/lysophospholipase-like GroES-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
PheT/TilS domain PheT/TilS domain 11
GroES-like ACP-like 11
MetI-like MetI-like 11
Metallo-dependent phosphatases beta-Roll 11
Nucleic acid-binding proteins BRCT domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PGBD-like Trypsin-like serine proteases 11
Putative isomerase YbhE Quinoprotein alcohol dehydrogenase-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
PIN domain-like Ribonuclease H-like 11
GAF domain-like lambda repressor-like DNA-binding domains 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Photosystem II reaction centre subunit H, transmembrane region PRC-barrel domain 11
Ribonuclease H-like DNA/RNA polymerases 11
RuvA domain 2-like RuvA domain 2-like 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
E set domains YVTN repeat-like/Quinoprotein amine dehydrogenase 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
HD-domain/PDEase-like Nucleotidyltransferase 11
RmlC-like cupins Homeodomain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Cyclophilin-like Single hybrid motif 11
DAK1/DegV-like DhaL-like 11
CheW-like CheW-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Rudiment single hybrid motif Cyclophilin-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Translation proteins ThrRS/AlaRS common domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Bacterial muramidases Lysozyme-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Glycoside hydrolase/deacetylase UraD-Like 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
ClpP/crotonase ClpP/crotonase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Flavoproteins Riboflavin synthase domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Macro domain-like Zn-dependent exopeptidases 11
Class II aaRS and biotin synthetases Translation proteins 11
Cyclophilin-like Cyclophilin-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Translation proteins Translation proteins 11
Ribosomal protein L6 Ribosomal protein L6 11
FAD-binding/transporter-associated domain-like CO dehydrogenase molybdoprotein N-domain-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Poly A polymerase C-terminal region-like ACT-like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Tex N-terminal region-like Ribonuclease H-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Carbamate kinase-like PUA domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
CalX-like 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
ACT-like Formyltransferase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
UROD/MetE-like Cobalamin (vitamin B12)-binding domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like ACP-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
DNase I-like 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
CalX-like beta-Roll 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
dUTPase-like dUTPase-like 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain beta-Roll 11
CalX-like YWTD domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Thiolase-like ACP-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Sensory domain-like HAMP domain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Ferritin-like MFS general substrate transporter 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
CalX-like CalX-like 11
HAMP domain-like Nucleotide cyclase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
Ribonuclease H-like Nucleic acid-binding proteins 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
PDZ domain-like ClpP/crotonase 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
TerB-like Chaperone J-domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Serine metabolism enzymes domain ACT-like 11
Subtilisin-like Metalloproteases ("zincins"), catalytic domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
PIN domain-like DNA/RNA polymerases 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
DNase I-like Metallo-dependent phosphatases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
RuvA domain 2-like JAB1/MPN domain 11
PH0987 N-terminal domain-like Single hybrid motif 11
TATA-box binding protein-like DNA-glycosylase 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
CO dehydrogenase flavoprotein C-terminal domain-like Molybdenum cofactor-binding domain 11
Concanavalin A-like lectins/glucanases Class I glutamine amidotransferase-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Apolipoprotein A-I Apolipoprotein A-I 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Homeodomain-like Ribonuclease H-like 11
DNA clamp DNA clamp 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
ACP-like alpha/beta-Hydrolases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Toll/Interleukin receptor TIR domain Putative isomerase YbhE 11
ARM repeat ARM repeat 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Amidase signature (AS) enzymes Pectin lyase-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]