SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Alicycliphilus denitrificans K601

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

674 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 911
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 595
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3315
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3116
"Winged helix" DNA-binding domain GAF domain-like 291
Thiolase-like Thiolase-like 251
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 225
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 182
CheY-like C-terminal effector domain of the bipartite response regulators 182
Actin-like ATPase domain Actin-like ATPase domain 165
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 153
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 155
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1413
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 144
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 144
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 144
GroES-like NAD(P)-binding Rossmann-fold domains 142
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 144
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 144
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 144
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 144
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 138
Calcium ATPase, transmembrane domain M HAD-like 138
Calcium ATPase, transduction domain A HAD-like 138
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 135
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 136
Thioredoxin-like GST C-terminal domain-like 122
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1212
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 128
Nucleotide cyclase EAL domain-like 1211
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 113
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 114
PYP-like sensor domain (PAS domain) EAL domain-like 1110
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 112
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 117
PreATP-grasp domain Rudiment single hybrid motif 112
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 102
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 107
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 93
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 94
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 93
Cytochrome c Cytochrome c 84
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 82
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 83
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 82
ClpP/crotonase ClpP/crotonase 72
PreATP-grasp domain Single hybrid motif 71
P-loop containing nucleoside triphosphate hydrolases MOP-like 71
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 75
"Winged helix" DNA-binding domain Chorismate lyase-like 71
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 75
Glutathione synthetase ATP-binding domain-like Single hybrid motif 71
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 72
cAMP-binding domain-like "Winged helix" DNA-binding domain 71
Rudiment single hybrid motif Single hybrid motif 71
Alpha-L RNA-binding motif Pseudouridine synthase 62
Trypsin-like serine proteases PDZ domain-like 62
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 62
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 63
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Phospholipase D/nuclease Phospholipase D/nuclease 64
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 64
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 52
Aconitase iron-sulfur domain LeuD/IlvD-like 55
HMA, heavy metal-associated domain HAD-like 53
Translation proteins EF-G C-terminal domain-like 53
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 53
Triger factor/SurA peptide-binding domain-like FKBP-like 55
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 51
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 52
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 52
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 53
CheY-like Homeodomain-like 52
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 54
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 53
Enolase N-terminal domain-like Enolase C-terminal domain-like 51
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
ParB/Sulfiredoxin KorB DNA-binding domain-like 41
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 44
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
HlyD-like secretion proteins HlyD-like secretion proteins 41
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 44
DsbC/DsbG N-terminal domain-like Thioredoxin-like 42
ACT-like ACT-like 44
PLP-binding barrel Alanine racemase C-terminal domain-like 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 42
PurM N-terminal domain-like PurM C-terminal domain-like 42
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
"Winged helix" DNA-binding domain PLP-dependent transferases 41
HD-domain/PDEase-like Nucleotidyltransferase 32
TPR-like TPR-like 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 33
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 32
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 32
CheY-like P-loop containing nucleoside triphosphate hydrolases 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Nucleotidyltransferase ACT-like 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
RuvA domain 2-like Nucleic acid-binding proteins 33
Cupredoxins Cupredoxins 33
Homodimeric domain of signal transducing histidine kinase CheY-like 33
MetI-like MetI-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
Single hybrid motif CoA-dependent acyltransferases 33
GAF domain-like Homeodomain-like 32
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 32
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
HD-domain/PDEase-like ACT-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 31
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
Homeodomain-like SIS domain 31
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
GAF domain-like EAL domain-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 21
EAL domain-like HD-domain/PDEase-like 21
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 22
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 21
Translation proteins Ribosomal protein S5 domain 2-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
L30e-like alpha/beta knot 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
HAMP domain-like Nucleotide cyclase 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
PYP-like sensor domain (PAS domain) CheY-like 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
GAF domain-like Nucleotide cyclase 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 22
Homeodomain-like Ribonuclease H-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Aldolase post-HMGL domain-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Pili subunits Pili subunits 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Homodimeric domain of signal transducing histidine kinase CheW-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
GAF domain-like PYP-like sensor domain (PAS domain) 22
Lysozyme-like PGBD-like 22
Putative DNA-binding domain CheY-like 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Histidine-containing phosphotransfer domain, HPT domain CheY-like 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
PRTase-like PRTase-like 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Nucleotidyltransferase TGS-like 21
PDZ domain-like PDZ domain-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
HAMP domain-like EAL domain-like 22
"Winged helix" DNA-binding domain MOP-like 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
HD-domain/PDEase-like TGS-like 21
Ribonuclease H-like DNA/RNA polymerases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
TGS-like ACT-like 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Bacterial muramidases Lysozyme-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Nucleic acid-binding proteins GAD domain-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
MOP-like MOP-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
UROD/MetE-like UROD/MetE-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
SMAD/FHA domain SMAD/FHA domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Nucleic acid-binding proteins PheT/TilS domain 11
CheY-like Methylesterase CheB, C-terminal domain 11
2Fe-2S ferredoxin-like ADC-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
GAF domain-like GAF domain-like 11
Lysozyme-like LysM domain 11
Pili subunits GspK insert domain-like 11
Flavoproteins Riboflavin synthase domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 11
MFS general substrate transporter Calcium ATPase, transmembrane domain M 11
TPR-like NTF2-like 11
Homeodomain-like DNA-glycosylase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Nudix Metallo-hydrolase/oxidoreductase 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Nucleotidylyl transferase YegP-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
GAF domain-like HD-domain/PDEase-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
YrdC/RibB RibA-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Methylglyoxal synthase-like Methylglyoxal synthase-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
PGBD-like PGBD-like 11
Tex N-terminal region-like Ribonuclease H-like 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Transmembrane di-heme cytochromes 4Fe-4S ferredoxins 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like ACT-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
HMA, heavy metal-associated domain MFS general substrate transporter 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Thioredoxin-like Nqo1 middle domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Periplasmic binding protein-like II ACT-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Zinc beta-ribbon DNA primase core 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Chorismate mutase II ACT-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Nucleotidylyl transferase Nudix 11
CheC-like Surface presentation of antigens (SPOA) 11
Methionine synthase domain Methionine synthase activation domain-like 11
Sensory domain-like CheY-like 11
Carbamate kinase-like PUA domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Tex N-terminal region-like RuvA domain 2-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain SCP-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
RNase III domain-like dsRNA-binding domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Translation proteins ThrRS/AlaRS common domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Cupredoxins Cytochrome c 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
PurS-like PurM N-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
CarD-like TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Resolvase-like Homeodomain-like 11
CheW-like CheY-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
FAD-linked oxidoreductase ALDH-like 11
RuvA domain 2-like RuvA domain 2-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Macro domain-like Zn-dependent exopeptidases 11
Thioredoxin-like Acyl-CoA N-acyltransferases (Nat) 11
PK beta-barrel domain-like PK C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Ribosomal protein L6 Ribosomal protein L6 11
AhpD-like AhpD-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Transmembrane di-heme cytochromes Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Calcium ATPase, transduction domain A MFS general substrate transporter 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
TATA-box binding protein-like DNA-glycosylase 11
PUA domain-like alpha/beta knot 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
PurS-like PurM C-terminal domain-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Nucleotidylyl transferase Riboflavin kinase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
TolA/TonB C-terminal domain Formin homology 2 domain (FH2 domain) 11
Nucleic acid-binding proteins BRCT domain 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
PPK N-terminal domain-like PHP14-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PHP14-like Phospholipase D/nuclease 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
DNA-glycosylase Nudix 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Cysteine proteinases alpha/beta-Hydrolases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Ribonuclease H-like RuvA domain 2-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
PurS-like FGAM synthase PurL, linker domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
DNA methylase specificity domain DNA methylase specificity domain 11
Formyltransferase FMT C-terminal domain-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Acyl-CoA N-acyltransferases (Nat) FKBP-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Lysozyme-like alpha/beta-Hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
PLP-dependent transferases PLP-dependent transferases 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Homeodomain-like TATA-box binding protein-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
FAS1 domain FAS1 domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
GroES-like GroES-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Rhodanese/Cell cycle control phosphatase 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
TGS-like Class II aaRS ABD-related 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Cyclophilin-like Cyclophilin-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Thioesterase/thiol ester dehydrase-isomerase Acyl-CoA N-acyltransferases (Nat) 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Hsp33 domain HSP33 redox switch-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
PIN domain-like DNA/RNA polymerases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
HCP-like Lysozyme-like 11
ACT-like Formyltransferase 11
DNA clamp DNA clamp 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
PGBD-like alpha/beta-Hydrolases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
FKBP-like FKBP-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Putative DNA-binding domain Translation proteins 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Thioredoxin-like TPR-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
4Fe-4S ferredoxins ADC-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
PheT/TilS domain Putative DNA-binding domain 11
Transmembrane di-heme cytochromes 2Fe-2S ferredoxin-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Protein kinase-like (PK-like) Adenine nucleotide alpha hydrolases-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
HAD-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
TGS-like Class II aaRS and biotin synthetases 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
ISP domain Bet v1-like 11
Lysozyme-like Cysteine proteinases 11
Translation proteins Translation proteins 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
YgfB-like Sec-C motif 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
YajQ-like YajQ-like 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
GroEL-intermediate domain like GroEL apical domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
TGS-like ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-binding domain 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
HAMP domain-like GAF domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleotide-diphospho-sugar transferases RraA-like 11
Ribbon-helix-helix ALDH-like 11
PurS-like Class I glutamine amidotransferase-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
alpha-helical ferredoxin Nucleotide-binding domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
RmlC-like cupins Homeodomain-like 11
Thioredoxin-like Thioredoxin-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Transmembrane di-heme cytochromes Riboflavin synthase domain-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
FliG FliG 11
Translation proteins PRC-barrel domain 11
PH0987 N-terminal domain-like Cyclophilin-like 11
PIN domain-like Ribonuclease H-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Fe,Mn superoxide dismutase (SOD), C-terminal domain Rhodanese/Cell cycle control phosphatase 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ferritin-like HAD-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Class II aaRS and biotin synthetases Translation proteins 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Single hybrid motif Single hybrid motif 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Prokaryotic type I DNA topoisomerase SWIB/MDM2 domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
PGBD-like Cysteine proteinases 11
RuvA domain 2-like BRCT domain 11
PDZ domain-like ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
cAMP-binding domain-like CBS-domain pair 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Nucleotide cyclase SMAD/FHA domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
MFS general substrate transporter HAD-like 11
Cytidine deaminase-like alpha/beta-Hydrolases 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
UraD-Like Zn-dependent exopeptidases 11
Nucleotide-binding domain Nucleotide-binding domain 11
Homeodomain-like Homeodomain-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
PreATP-grasp domain PreATP-grasp domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11

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