SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Rhodospirillum rubrum F11

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

714 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4327
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3312
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3021
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 2622
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 251
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2517
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 202
Actin-like ATPase domain Actin-like ATPase domain 185
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1715
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1513
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 151
EAL domain-like Nucleotide cyclase 1512
Homodimeric domain of signal transducing histidine kinase CheY-like 1412
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 145
PYP-like sensor domain (PAS domain) CheY-like 1311
GroES-like NAD(P)-binding Rossmann-fold domains 123
CheY-like C-terminal effector domain of the bipartite response regulators 112
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 112
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 116
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 117
CheY-like Homeodomain-like 102
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 101
PYP-like sensor domain (PAS domain) EAL domain-like 109
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 101
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 103
Homeodomain-like Homeodomain-like 93
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 97
Thiolase-like Thiolase-like 91
P-loop containing nucleoside triphosphate hydrolases MOP-like 91
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
CheY-like P-loop containing nucleoside triphosphate hydrolases 91
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 91
TPR-like TPR-like 87
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 83
Thioredoxin-like GST C-terminal domain-like 71
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 73
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 73
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 71
cAMP-binding domain-like "Winged helix" DNA-binding domain 72
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 73
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 72
PreATP-grasp domain Rudiment single hybrid motif 73
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Calcium ATPase, transduction domain A HAD-like 66
(Trans)glycosidases Glycosyl hydrolase domain 64
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 62
CheY-like Nucleotide cyclase 66
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 62
RmlC-like cupins Homeodomain-like 61
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 64
E set domains (Trans)glycosidases 63
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 62
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
CheY-like Histidine-containing phosphotransfer domain, HPT domain 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 62
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 62
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
Calcium ATPase, transmembrane domain M HAD-like 55
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 51
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 55
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 51
Translation proteins EF-G C-terminal domain-like 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 53
Class II aaRS and biotin synthetases Class II aaRS ABD-related 42
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 43
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
"Winged helix" DNA-binding domain PLP-dependent transferases 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
HlyD-like secretion proteins HlyD-like secretion proteins 43
ClpP/crotonase ClpP/crotonase 42
GAF domain-like Homeodomain-like 43
ACT-like ACT-like 43
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
PreATP-grasp domain Single hybrid motif 42
Methylesterase CheB, C-terminal domain CheY-like 42
TPR-like P-loop containing nucleoside triphosphate hydrolases 44
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Glutathione synthetase ATP-binding domain-like Single hybrid motif 42
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
PYP-like sensor domain (PAS domain) GAF domain-like 44
E set domains Glycosyl hydrolase domain 42
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 41
Triger factor/SurA peptide-binding domain-like FKBP-like 44
PLP-binding barrel Alanine racemase C-terminal domain-like 42
GAF domain-like Homodimeric domain of signal transducing histidine kinase 44
CheY-like CheY-like 44
Aldolase post-HMGL domain-like 42
Lysozyme-like beta-lactamase/transpeptidase-like 44
Rudiment single hybrid motif Single hybrid motif 42
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
Homodimeric domain of signal transducing histidine kinase CheW-like 33
HAMP domain-like Nucleotide cyclase 32
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 31
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 33
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 32
lambda repressor-like DNA-binding domains LexA/Signal peptidase 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
HMA, heavy metal-associated domain HAD-like 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 31
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 32
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 32
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 33
Trypsin-like serine proteases PDZ domain-like 32
MetI-like MetI-like 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 32
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
"Winged helix" DNA-binding domain GAF domain-like 31
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Alpha-L RNA-binding motif Pseudouridine synthase 31
CheY-like EAL domain-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
PDZ domain-like ClpP/crotonase 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
PreATP-grasp domain post-HMGL domain-like 21
TK C-terminal domain-like 4Fe-4S ferredoxins 22
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
FMN-binding split barrel UbiD C-terminal domain-like 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 22
post-HMGL domain-like Single hybrid motif 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
GAF domain-like GAF domain-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
lambda repressor-like DNA-binding domains RmlC-like cupins 22
Bacterial muramidases Lysozyme-like 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
FKBP-like FKBP-like 22
Rudiment single hybrid motif Aldolase 21
Aldolase Single hybrid motif 21
Single hybrid motif CoA-dependent acyltransferases 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
PDZ domain-like PDZ domain-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Rudiment single hybrid motif post-HMGL domain-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
Acyl-CoA N-acyltransferases (Nat) Glutathione synthetase ATP-binding domain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
GAF domain-like Nucleotide cyclase 22
CheW-like CheW-like 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
PreATP-grasp domain Aldolase 21
Glutathione synthetase ATP-binding domain-like Aldolase 21
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 21
Nucleotidyltransferase ACT-like 22
Translation proteins ThrRS/AlaRS common domain 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Cytochrome c Cytochrome c 21
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 22
HAMP domain-like EAL domain-like 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 21
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
GroEL-intermediate domain like GroEL apical domain-like 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Nucleic acid-binding proteins RuvA domain 2-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Galactose mutarotase-like E set domains 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Translation proteins Ribosomal protein S5 domain 2-like 21
GroEL equatorial domain-like GroEL apical domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Macro domain-like Zn-dependent exopeptidases 21
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
Calcium ATPase, transmembrane domain M Metal cation-transporting ATPase, ATP-binding domain N 22
PK beta-barrel domain-like PK C-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Thioredoxin-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases WD40 repeat-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Trigger factor ribosome-binding domain FKBP-like 11
HPr-like Phosphohistidine domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
TGS-like ThrRS/AlaRS common domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Nudix "Winged helix" DNA-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Nucleotidyltransferase Nucleotidyltransferase 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein L6 Ribosomal protein L6 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 11
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 11
DNA-glycosylase Nudix 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
GAF domain-like EAL domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
alpha/beta-Hydrolases TPR-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase EAL domain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Photosystem II reaction centre subunit H, transmembrane region PRC-barrel domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
"Winged helix" DNA-binding domain Phosphotyrosine protein phosphatases I 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Nucleic acid-binding proteins BRCT domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Nucleotide cyclase 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
PEP carboxykinase-like P-loop containing nucleoside triphosphate hydrolases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
YlxR-like L30e-like 11
EAL domain-like CBS-domain pair 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
CheY-like HD-domain/PDEase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
alpha-helical ferredoxin Nucleotide-binding domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
YrdC/RibB RibA-like 11
Clc chloride channel CBS-domain pair 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Nucleotidylyl transferase Riboflavin kinase-like 11
L domain-like P-loop containing nucleoside triphosphate hydrolases 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
PheT/TilS domain Putative DNA-binding domain 11
ACP-like alpha/beta-Hydrolases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Ribonuclease H-like HRDC-like 11
Transmembrane di-heme cytochromes Cytochrome c 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
CBS-domain pair Nucleotide cyclase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
ADC synthase Class I glutamine amidotransferase-like 11
RuvA domain 2-like JAB1/MPN domain 11
Translation proteins Translation proteins 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
L30e-like alpha/beta knot 11
CheC-like Surface presentation of antigens (SPOA) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
PIN domain-like DNA/RNA polymerases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
PHP14-like Phospholipase D/nuclease 11
Trypsin-like serine proteases His-Me finger endonucleases 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 11
UDP-Glycosyltransferase/glycogen phosphorylase Glycoside hydrolase/deacetylase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Poly A polymerase C-terminal region-like ACT-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
FAD/NAD(P)-binding domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Homeodomain-like DNA-glycosylase 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
EspE N-terminal domain-like CheW-like 11
PTS system IIB component-like PTS system IIB component-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
E set domains E set domains 11
Thioredoxin-like Thioredoxin-like 11
WD40 repeat-like WD40 repeat-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Nqo5-like HydB/Nqo4-like 11
Nucleotidyltransferase TGS-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
4Fe-4S ferredoxins Radical SAM enzymes 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
S-adenosyl-L-methionine-dependent methyltransferases C-terminal effector domain of the bipartite response regulators 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
SH3-domain SH3-domain 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Quinoprotein alcohol dehydrogenase-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Caspase-like 11
FAD-linked oxidoreductase ALDH-like 11
HD-domain/PDEase-like TGS-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
RNase III domain-like dsRNA-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
cAMP-binding domain-like FabD/lysophospholipase-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
UDP-Glycosyltransferase/glycogen phosphorylase S-adenosyl-L-methionine-dependent methyltransferases 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
4Fe-4S ferredoxins Fe-only hydrogenase 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Thioredoxin-like TPR-like 11
Nucleotidyltransferase Thioredoxin-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase C-terminal effector domain of the bipartite response regulators 11
FliG FliG 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Trypsin-like serine proteases DPP6 N-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
GAF domain-like CheY-like 11
MoaD/ThiS ThiG-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
TPR-like Nucleotide-diphospho-sugar transferases 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Formyltransferase FMT C-terminal domain-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
MFS general substrate transporter Adenine nucleotide alpha hydrolases-like 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
UROD/MetE-like UROD/MetE-like 11
SIS domain CBS-domain pair 11
CheW-like CheY-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Zinc beta-ribbon DNA primase core 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Nucleic acid-binding proteins GAD domain-like 11
EspE N-terminal domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
HD-domain/PDEase-like ACT-like 11
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Histidine-containing phosphotransfer domain, HPT domain EspE N-terminal domain-like 11
Phoshotransferase/anion transport protein HPr-like 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like ACT-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
GAF domain-like Phosphohistidine domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
DNA clamp DNA clamp 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Methylesterase CheB, C-terminal domain C-terminal effector domain of the bipartite response regulators 11
Thioredoxin-like Six-hairpin glycosidases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
HD-domain/PDEase-like Nucleotidyltransferase 11
TGS-like ACT-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Lysozyme-like PGBD-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
NAD(P)-binding Rossmann-fold domains PLP-dependent transferases 11
GIY-YIG endonuclease RuvA domain 2-like 11
ACP-like ACP-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PHP domain-like AF1531-like 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Hsp33 domain HSP33 redox switch-like 11
CcmK-like CcmK-like 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
L domain-like L domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Periplasmic binding protein-like II ACT-like 11
Radical SAM enzymes Radical SAM enzymes 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Hemerythrin-like CheY-like 11
TGS-like Class II aaRS ABD-related 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Acetyl-CoA synthetase-like ACP-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
NTF2-like Sec-C motif 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases GAD domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Homeodomain-like TATA-box binding protein-like 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
Sec2 N-terminal region Duplicated hybrid motif 11
Homodimeric domain of signal transducing histidine kinase EAL domain-like 11
Ribokinase-like Nucleotidylyl transferase 11
Formate/glycerate dehydrogenase catalytic domain-like Formate/glycerate dehydrogenase catalytic domain-like 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
TGS-like Class II aaRS and biotin synthetases 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
FAD/NAD(P)-binding domain Riboflavin synthase domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain C-terminal effector domain of the bipartite response regulators 11
beta-lactamase/transpeptidase-like Staphylococcal nuclease 11
Barwin-like endoglucanases Sporulation related repeat 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
DPP6 N-terminal domain-like WD40 repeat-like 11
TATA-box binding protein-like DNA-glycosylase 11
LysM domain LysM domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
P-loop containing nucleoside triphosphate hydrolases DPP6 N-terminal domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Single hybrid motif TK C-terminal domain-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
CarD-like TRCF domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PUA domain-like alpha/beta knot 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Trypsin-like serine proteases WD40 repeat-like 11
PreATP-grasp domain PreATP-grasp domain 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
ALDH-like ALDH-like 11
UDP-Glycosyltransferase/glycogen phosphorylase Six-hairpin glycosidases 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PPK N-terminal domain-like PHP14-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
EspE N-terminal domain-like Homodimeric domain of signal transducing histidine kinase 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
cAMP-binding domain-like TPR-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
GAF domain-like HD-domain/PDEase-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
OMPA-like OmpA-like 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Translation proteins PRC-barrel domain 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
HRDC-like HRDC-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
ACT-like Formyltransferase 11
Nucleotide-diphospho-sugar transferases Terpenoid synthases 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
ACP-like CoA-dependent acyltransferases 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Cysteine proteinases Glutathione synthetase ATP-binding domain-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Quinoprotein alcohol dehydrogenase-like Caspase-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Cysteine proteinases PreATP-grasp domain 11
RuvA domain 2-like BRCT domain 11
alpha/beta-Hydrolases P-loop containing nucleoside triphosphate hydrolases 11
LysM domain Duplicated hybrid motif 11
Homodimeric domain of signal transducing histidine kinase Nucleotide cyclase 11
Pectin lyase-like Pectin lyase-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
CBS-domain pair MgtE membrane domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Nucleic acid-binding proteins PheT/TilS domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Homodimeric domain of signal transducing histidine kinase C-terminal effector domain of the bipartite response regulators 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Hemerythrin-like Hemerythrin-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases Translation proteins 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
cAMP-binding domain-like CBS-domain pair 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
GroES-like GroES-like 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
YebC-like PFL-like glycyl radical enzymes 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Trypsin-like serine proteases P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Lysozyme-like Staphylococcal nuclease 11
Carbamate kinase-like PUA domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
TerB-like Chaperone J-domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
PIN domain-like Ribonuclease H-like 11

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