SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Mesorhizobium ciceri biovar biserrulae WSM1271

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

701 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 771
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 6413
P-loop containing nucleoside triphosphate hydrolases MOP-like 432
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 396
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3818
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 354
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 313
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 304
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 281
GroES-like NAD(P)-binding Rossmann-fold domains 262
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 244
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 232
CheY-like C-terminal effector domain of the bipartite response regulators 222
Thioredoxin-like GST C-terminal domain-like 211
Actin-like ATPase domain Actin-like ATPase domain 207
Folate-binding domain Aminomethyltransferase beta-barrel domain 205
Homeodomain-like Homeodomain-like 195
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 186
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 171
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 175
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 165
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1613
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 151
FAD/NAD(P)-binding domain Folate-binding domain 153
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 153
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1511
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1412
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 143
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 131
Homodimeric domain of signal transducing histidine kinase CheY-like 139
cAMP-binding domain-like "Winged helix" DNA-binding domain 121
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 125
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 123
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1111
FAD-linked reductases, C-terminal domain Folate-binding domain 112
Nucleotide cyclase EAL domain-like 115
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 112
Enolase N-terminal domain-like Enolase C-terminal domain-like 111
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 104
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 102
Thiolase-like Thiolase-like 101
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 93
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 95
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 93
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 91
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 92
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 95
Class I glutamine amidotransferase-like Homeodomain-like 92
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 84
"Winged helix" DNA-binding domain GAF domain-like 81
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 81
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 85
PreATP-grasp domain Rudiment single hybrid motif 83
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 84
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 84
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 81
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 82
Trypsin-like serine proteases PDZ domain-like 83
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 83
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 84
PYP-like sensor domain (PAS domain) CheY-like 87
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 83
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 84
Homeodomain-like SIS domain 81
"Winged helix" DNA-binding domain Actin-like ATPase domain 72
CheY-like P-loop containing nucleoside triphosphate hydrolases 73
C-terminal effector domain of the bipartite response regulators TPR-like 74
PYP-like sensor domain (PAS domain) Nucleotide cyclase 74
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 61
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
"Winged helix" DNA-binding domain Chorismate lyase-like 61
MetI-like MetI-like 63
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 63
"Winged helix" DNA-binding domain PLP-dependent transferases 61
lambda repressor-like DNA-binding domains RmlC-like cupins 62
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
Cytochrome c Cytochrome c 63
PYP-like sensor domain (PAS domain) EAL domain-like 63
RmlC-like cupins Homeodomain-like 52
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
ISP domain Bet v1-like 51
HAD-like Calcium ATPase, transmembrane domain M 54
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
Regulatory protein AraC Homeodomain-like 52
ACT-like ACT-like 53
CheY-like CheY-like 54
PLP-binding barrel Alanine racemase C-terminal domain-like 51
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
CheY-like Homeodomain-like 52
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 53
Calcium ATPase, transduction domain A HAD-like 54
PDZ domain-like PDZ domain-like 52
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 54
(Trans)glycosidases Glycosyl hydrolase domain 43
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
GroEL equatorial domain-like GroEL-intermediate domain like 41
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 42
GroEL equatorial domain-like GroEL apical domain-like 41
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 42
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 42
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
alpha/beta-Hydrolases Galactose-binding domain-like 42
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 43
Translation proteins EF-G C-terminal domain-like 43
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 42
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 42
GroEL-intermediate domain like GroEL apical domain-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Phospholipase D/nuclease Phospholipase D/nuclease 42
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
TPR-like P-loop containing nucleoside triphosphate hydrolases 43
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 42
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 43
Lysozyme-like beta-lactamase/transpeptidase-like 43
MalF N-terminal region-like MetI-like 41
Alpha-L RNA-binding motif Pseudouridine synthase 42
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 43
Cupredoxins Cupredoxins 44
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 41
Single hybrid motif CoA-dependent acyltransferases 42
Nucleic acid-binding proteins RuvA domain 2-like 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Glutathione synthetase ATP-binding domain-like Single hybrid motif 32
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 32
GroES-like GroES-like 31
HMA, heavy metal-associated domain HAD-like 32
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PreATP-grasp domain Single hybrid motif 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 31
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
PGBD-like L,D-transpeptidase catalytic domain-like 32
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
Rudiment single hybrid motif Single hybrid motif 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 33
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Lysozyme-like PGBD-like 31
Pectin lyase-like Autotransporter 33
L30e-like alpha/beta knot 31
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
HlyD-like secretion proteins HlyD-like secretion proteins 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
GAF domain-like PYP-like sensor domain (PAS domain) 33
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
ALDH-like ALDH-like 22
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 22
E set domains Glycosyl hydrolase domain 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
Aldolase post-HMGL domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Homeodomain-like Ribonuclease H-like 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Nucleotidyltransferase ACT-like 22
GAF domain-like CheY-like 22
Clc chloride channel CBS-domain pair 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
CarD-like TRCF domain-like 22
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
PH0987 N-terminal domain-like Cyclophilin-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
ACT-like Formyltransferase 21
Translation proteins Ribosomal protein S5 domain 2-like 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Galactose mutarotase-like Six-hairpin glycosidases 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
P-loop containing nucleoside triphosphate hydrolases CarD-like 22
Macro domain-like Zn-dependent exopeptidases 21
Cupredoxins Cytochrome c 21
CBS-domain pair MgtE membrane domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
alpha-helical ferredoxin Nucleotide-binding domain 22
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
MgtE N-terminal domain-like CBS-domain pair 21
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Homeodomain-like Probable bacterial effector-binding domain 21
Pectin lyase-like Pectin lyase-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
CheY-like Nucleotide cyclase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
NTF2-like FAD/NAD(P)-binding domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
TPR-like TPR-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
E set domains (Trans)glycosidases 22
ClpP/crotonase ClpP/crotonase 21
Translation proteins ThrRS/AlaRS common domain 22
Ribosomal protein L6 Ribosomal protein L6 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
HRDC-like HRDC-like 11
OMPA-like OMPA-like 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain NAD(P)-linked oxidoreductase 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
PGBD-like PGBD-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Acetyl-CoA synthetase-like ACP-like 11
PIN domain-like DNA/RNA polymerases 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
TPR-like Porins 11
PilZ domain-like PilZ domain-like 11
Ribonuclease H-like HRDC-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Bacterial muramidases Lysozyme-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
Hairpin loop containing domain-like TPR-like 11
PLP-binding barrel Arginase/deacetylase 11
Aldolase Single hybrid motif 11
Nucleotidylyl transferase Riboflavin kinase-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
alpha/beta-Hydrolases Nucleotide cyclase 11
PHP14-like Phospholipase D/nuclease 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
(Trans)glycosidases beta-Roll 11
Nucleotide-binding domain Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases DNA ligase/mRNA capping enzyme, catalytic domain 11
ISP domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ribulose-phoshate binding barrel Actin-like ATPase domain 11
LysM domain Duplicated hybrid motif 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Bacterial hemolysins 11
YjeF N-terminal domain-like Ribokinase-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like alpha/beta knot 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Metallo-dependent phosphatases DNA ligase/mRNA capping enzyme, catalytic domain 11
PDZ domain-like ClpP/crotonase 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Trigger factor ribosome-binding domain FKBP-like 11
Tex N-terminal region-like Ribonuclease H-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
YrdC/RibB RibA-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
FAD-linked oxidoreductase ALDH-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Serine metabolism enzymes domain ACT-like 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
Poly A polymerase C-terminal region-like ACT-like 11
Phage fibre proteins Phage fibre proteins 11
Nucleotidylyl transferase tRNA-binding arm 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Rudiment single hybrid motif Aldolase 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
(Trans)glycosidases (Trans)glycosidases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
ACP-like Trimeric LpxA-like enzymes 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Caspase-like P-loop containing nucleoside triphosphate hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Zn-dependent exopeptidases P-loop containing nucleoside triphosphate hydrolases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Adhesin YadA, collagen-binding domain Pili subunits 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
RmlC-like cupins RmlC-like cupins 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
PHP domain-like AF1531-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Thioredoxin-like Nqo1 middle domain-like 11
Thioredoxin-like TPR-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Ribokinase-like Nucleotidylyl transferase 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
PPK N-terminal domain-like PHP14-like 11
AGR C 984p-like AGR C 984p-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Formyltransferase FMT C-terminal domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
DNA-glycosylase Nudix 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
HD-domain/PDEase-like TGS-like 11
MFS general substrate transporter Dimeric alpha+beta barrel 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nudix "Winged helix" DNA-binding domain 11
YebC-like PFL-like glycyl radical enzymes 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
CheW-like CheY-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
GAF domain-like GAF domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Acetyl-CoA synthetase-like TTHA0583/YokD-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
DNA clamp DNA clamp 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
HCP-like TPR-like 11
Ferritin-like HAD-like 11
"Winged helix" DNA-binding domain SCP-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Methionine synthase domain Methionine synthase activation domain-like 11
Periplasmic binding protein-like II Voltage-gated potassium channels 11
2Fe-2S ferredoxin-like ADC-like 11
YceI-like OmpA-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
HPr-like Phosphohistidine domain 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
TGS-like Class II aaRS ABD-related 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Carbamate kinase-like ACT-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain Six-hairpin glycosidases 11
FliG FliG 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
Translation proteins PRC-barrel domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Translation proteins Translation proteins 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
ISP domain Riboflavin synthase domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Fucose-specific lectin Fucose-specific lectin 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
alpha-helical ferredoxin ARM repeat 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Nucleotidyltransferase TGS-like 11
RuvA domain 2-like JAB1/MPN domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Phage tail proteins gp5 N-terminal domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
HCP-like PGBD-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
TerB-like Chaperone J-domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
PLP-dependent transferases PLP-dependent transferases 11
gp5 N-terminal domain-like Phage fibre proteins 11
Nucleotide-diphospho-sugar transferases Six-hairpin glycosidases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
TGS-like Class II aaRS and biotin synthetases 11
Tex N-terminal region-like RuvA domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
PreATP-grasp domain Aldolase 11
RuvA domain 2-like RuvA domain 2-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Phage tail proteins Phage fibre proteins 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
TGS-like ACT-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
RmlC-like cupins NTF2-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
MFS general substrate transporter MFS general substrate transporter 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
Nucleic acid-binding proteins BRCT domain 11
HCP-like alpha/beta-Hydrolases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
TGS-like ThrRS/AlaRS common domain 11
TolB, N-terminal domain TPR-like 11
P-loop containing nucleoside triphosphate hydrolases Metallo-dependent phosphatases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Caspase-like Sec63 N-terminal domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
ISP domain 2Fe-2S ferredoxin-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
LysM domain LysM domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
PreATP-grasp domain PreATP-grasp domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
post-HMGL domain-like Single hybrid motif 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Ferritin-like Ferritin-like 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
RNase III domain-like dsRNA-binding domain-like 11
ADC synthase Class I glutamine amidotransferase-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
4Fe-4S ferredoxins ADC-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
HD-domain/PDEase-like ACT-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
beta-Roll Concanavalin A-like lectins/glucanases 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Tetrahydrobiopterin biosynthesis enzymes-like Carbamate kinase-like 11
Nucleotide cyclase C-terminal effector domain of the bipartite response regulators 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
CheY-like Methylesterase CheB, C-terminal domain 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-linked oxidoreductase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ribonuclease H-like RuvA domain 2-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Phage tail proteins Phage tail proteins 11
S-adenosyl-L-methionine-dependent methyltransferases EreA/ChaN-like 11
Periplasmic binding protein-like II ACT-like 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Carbamate kinase-like PUA domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
beta-Roll beta-Roll 11
PreATP-grasp domain post-HMGL domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Single hybrid motif TK C-terminal domain-like 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
Glycoside hydrolase/deacetylase UraD-Like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PGBD-like beta-lactamase/transpeptidase-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
alpha/beta-Hydrolases FMN-binding split barrel 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Ankyrin repeat Cytochrome c 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
GIY-YIG endonuclease RuvA domain 2-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Zinc beta-ribbon DNA primase core 11
FAD/NAD(P)-binding domain Nucleotide-binding domain 11
PRC-barrel domain PRC-barrel domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
DAK1/DegV-like DhaL-like 11
PheT/TilS domain Putative DNA-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
GAF domain-like Phosphohistidine domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
HCP-like HCP-like 11
ARM repeat ARM repeat 11
Rudiment single hybrid motif post-HMGL domain-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
YlxR-like L30e-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
C-terminal effector domain of the bipartite response regulators TolB, N-terminal domain 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
dUTPase-like dUTPase-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
alpha/beta-Hydrolases C-terminal effector domain of the bipartite response regulators 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nucleic acid-binding proteins PheT/TilS domain 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
"Winged helix" DNA-binding domain HRDC-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PIN domain-like Ribonuclease H-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Radical SAM enzymes RuvA domain 2-like 11

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