SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Ramlibacter tataouinensis TTB310

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

681 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 7440
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 471
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 4631
Homodimeric domain of signal transducing histidine kinase CheY-like 4328
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4325
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 4224
PYP-like sensor domain (PAS domain) CheY-like 2817
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2514
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 202
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1815
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 173
CheY-like C-terminal effector domain of the bipartite response regulators 162
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 144
Thioredoxin-like GST C-terminal domain-like 142
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 145
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1310
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 136
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 132
GroES-like NAD(P)-binding Rossmann-fold domains 133
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 131
GAF domain-like Homodimeric domain of signal transducing histidine kinase 129
Actin-like ATPase domain Actin-like ATPase domain 124
CheY-like CheY-like 1210
Homeodomain-like Homeodomain-like 115
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 105
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 104
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 102
Cytochrome c Cytochrome c 106
"Winged helix" DNA-binding domain GAF domain-like 91
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 98
PYP-like sensor domain (PAS domain) GAF domain-like 96
Histidine-containing phosphotransfer domain, HPT domain CheY-like 98
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 95
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 93
CheY-like GAF domain-like 97
P-loop containing nucleoside triphosphate hydrolases MOP-like 82
Thiolase-like Thiolase-like 82
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 84
P-loop containing nucleoside triphosphate hydrolases Translation proteins 85
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 75
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 75
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 75
Phospholipase D/nuclease Phospholipase D/nuclease 73
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 75
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 75
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 73
Enolase N-terminal domain-like Enolase C-terminal domain-like 71
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 73
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 63
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 61
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 61
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 62
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 64
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
CheY-like Homeodomain-like 62
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
Alpha-L RNA-binding motif Pseudouridine synthase 52
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 55
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 54
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
CheY-like P-loop containing nucleoside triphosphate hydrolases 51
PreATP-grasp domain Rudiment single hybrid motif 52
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 52
"Winged helix" DNA-binding domain Chorismate lyase-like 52
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 53
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 43
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 42
Triger factor/SurA peptide-binding domain-like FKBP-like 44
ISP domain Bet v1-like 43
cAMP-binding domain-like "Winged helix" DNA-binding domain 42
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 43
Translation proteins EF-G C-terminal domain-like 43
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
ACT-like ACT-like 44
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
Trypsin-like serine proteases PDZ domain-like 42
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 44
HD-domain/PDEase-like ACT-like 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
HAMP domain-like PYP-like sensor domain (PAS domain) 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Single hybrid motif CoA-dependent acyltransferases 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
TPR-like TPR-like 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 33
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
HD-domain/PDEase-like Nucleotidyltransferase 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
MetI-like MetI-like 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Oxidoreductase molybdopterin-binding domain E set domains 31
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
ClpP/crotonase ClpP/crotonase 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Nucleotidyltransferase ACT-like 32
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 33
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
"Winged helix" DNA-binding domain PLP-dependent transferases 21
TGS-like ACT-like 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Rudiment single hybrid motif Single hybrid motif 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
DNA methylase specificity domain DNA methylase specificity domain 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
PDZ domain-like PDZ domain-like 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Nucleotidyltransferase TGS-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Cupredoxins Cupredoxins 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
Formyltransferase FMT C-terminal domain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Ferritin-like Ferritin-like 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Heme-dependent catalase-like Class I glutamine amidotransferase-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
PYP-like sensor domain (PAS domain) Homeodomain-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
PreATP-grasp domain Single hybrid motif 21
Translation proteins ThrRS/AlaRS common domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
PLP-binding barrel Alanine racemase C-terminal domain-like 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
CheW-like CheY-like 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Lysozyme-like beta-lactamase/transpeptidase-like 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HD-domain/PDEase-like TGS-like 21
Nucleotide cyclase EAL domain-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
DinB/YfiT-like putative metalloenzymes C-type lectin-like 22
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 22
GAF domain-like GAF domain-like 21
Cupredoxins Cytochrome c 22
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Periplasmic binding protein-like II Rhodanese/Cell cycle control phosphatase 21
L30e-like alpha/beta knot 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Regulatory protein AraC Homeodomain-like 21
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
FKBP-like FKBP-like 11
SMAD/FHA domain SMAD/FHA domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nudix Metallo-hydrolase/oxidoreductase 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Hsp33 domain HSP33 redox switch-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
HAMP domain-like CheY-like 11
PurS-like Class I glutamine amidotransferase-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PurS-like PurM N-terminal domain-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
2Fe-2S ferredoxin-like ADC-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
DNA-glycosylase Nudix 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Single hybrid motif Single hybrid motif 11
YgfB-like Sec-C motif 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 11
Pili subunits GspK insert domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Outer membrane efflux proteins (OEP) 11
Thiolase-like FabD/lysophospholipase-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Chorismate mutase II ACT-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Trigger factor ribosome-binding domain FKBP-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Galactose-binding domain-like Galactose-binding domain-like 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Multidrug efflux transporter AcrB transmembrane domain Outer membrane efflux proteins (OEP) 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
FMT C-terminal domain-like Bacterial luciferase-like 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PurS-like PurM C-terminal domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
PIN domain-like DNA/RNA polymerases 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
TATA-box binding protein-like DNA-glycosylase 11
Formyltransferase Formyltransferase 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Galactose-binding domain-like (Trans)glycosidases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
HAD-like Calcium ATPase, transmembrane domain M 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Galactose mutarotase-like E set domains 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
FMT C-terminal domain-like Acetyl-CoA synthetase-like 11
Prokaryotic type I DNA topoisomerase SWIB/MDM2 domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
GAF domain-like Nucleotide cyclase 11
PrpR receptor domain-like Homeodomain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
PUA domain-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Tex N-terminal region-like Ribonuclease H-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
RuvA domain 2-like BRCT domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
HMA, heavy metal-associated domain HAD-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Thiolase-like Heme oxygenase-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Thioredoxin-like TPR-like 11
TGS-like Class II aaRS and biotin synthetases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
YrdC/RibB RibA-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Thioredoxin-like Nqo1 middle domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Nucleotidylyl transferase tRNA-binding arm 11
Ribonuclease H-like DNA/RNA polymerases 11
FMT C-terminal domain-like ACP-like 11
Thiolase-like alpha/beta-Hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases FAD-linked reductases, C-terminal domain 11
Nucleic acid-binding proteins GAD domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
PPK N-terminal domain-like PHP14-like 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Six-hairpin glycosidases Galactose-binding domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Bacterial luciferase-like ACP-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Cytidine deaminase-like alpha/beta-Hydrolases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
alpha/beta-Hydrolases Thioesterase/thiol ester dehydrase-isomerase 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Nucleotidylyl transferase YegP-like 11
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Calcium ATPase, transduction domain A HAD-like 11
UraD-Like Zn-dependent exopeptidases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
(Trans)glycosidases Six-hairpin glycosidases 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
DNA clamp DNA clamp 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PP2C-like 11
Thioredoxin-like Thioredoxin-like 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
CheY-like Nucleotide cyclase 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
(Trans)glycosidases NAD(P)-binding Rossmann-fold domains 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Radical SAM enzymes RuvA domain 2-like 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Thioredoxin-like alpha/beta-Hydrolases 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Cadherin-like Cadherin-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Carbamate kinase-like PUA domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
ACP-like alpha/beta-Hydrolases 11
Homeodomain-like DNA-glycosylase 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Translation proteins Translation proteins 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Aldolase post-HMGL domain-like 11
FabD/lysophospholipase-like ACP-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
beta-Roll beta-Roll 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PLP-dependent transferases PLP-dependent transferases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PIN domain-like Ribonuclease H-like 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
NAD(P)-linked oxidoreductase YjgF-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Formyltransferase Bacterial luciferase-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Nucleotide-diphospho-sugar transferases Protein kinase-like (PK-like) 11
Acetyl-CoA synthetase-like Bacterial luciferase-like 11
Ribosomal protein L6 Ribosomal protein L6 11
GAF domain-like EspE N-terminal domain-like 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Acyl-CoA N-acyltransferases (Nat) Glutathione synthetase ATP-binding domain-like 11
(Trans)glycosidases (Trans)glycosidases 11
Nucleic acid-binding proteins PheT/TilS domain 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Acetyl-CoA synthetase-like ACP-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Homeodomain-like Adenine nucleotide alpha hydrolases-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Nucleic acid-binding proteins BRCT domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Formyltransferase Acetyl-CoA synthetase-like 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
Thioesterase/thiol ester dehydrase-isomerase Acyl-CoA N-acyltransferases (Nat) 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
TGS-like ThrRS/AlaRS common domain 11
Putative DNA-binding domain Translation proteins 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
HAMP domain-like GAF domain-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
PreATP-grasp domain PreATP-grasp domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Homeodomain-like TATA-box binding protein-like 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
FAD-linked oxidoreductase ALDH-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PDZ domain-like ClpP/crotonase 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
PHP14-like Phospholipase D/nuclease 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
Formyltransferase ACP-like 11
FAD/NAD(P)-binding domain ISP domain 11
Homeodomain-like SIS domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
ACT-like Formyltransferase 11
Carbamate kinase-like ACT-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Sensory domain-like HAMP domain-like 11
PurS-like FGAM synthase PurL, linker domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
TGS-like Class II aaRS ABD-related 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-binding domain 11
FabD/lysophospholipase-like alpha/beta-Hydrolases 11
Tex N-terminal region-like RuvA domain 2-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase alpha/beta-Hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
GroEL-intermediate domain like GroEL apical domain-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nucleotidylyl transferase Nudix 11
YajQ-like YajQ-like 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
HIT-like HIT-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
CarD-like TRCF domain-like 11
PHP domain-like PHP domain-like 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Zinc beta-ribbon DNA primase core 11
GAF domain-like Homeodomain-like 11
alpha/beta-Hydrolases Fibronectin type III 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
GAF domain-like EAL domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
"Winged helix" DNA-binding domain MOP-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Outer membrane efflux proteins (OEP) 11
Methylesterase CheB, C-terminal domain CheY-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
GroES-like GroES-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
FMN-linked oxidoreductases Phosphoenolpyruvate/pyruvate domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
NHL repeat Concanavalin A-like lectins/glucanases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Acyl-CoA N-acyltransferases (Nat) Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Ribonuclease H-like RuvA domain 2-like 11
Thiolase-like ACP-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Nucleotidyltransferase Nucleotidyltransferase 11
4Fe-4S ferredoxins ADC-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleotide cyclase SMAD/FHA domain 11
Translation proteins PRC-barrel domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Bacterial muramidases Lysozyme-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11

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