SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Rhodanobacter denitrificans

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

696 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2815
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2512
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 201
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 176
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 175
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 165
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 165
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 165
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 165
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 154
Actin-like ATPase domain Actin-like ATPase domain 143
Thioredoxin-like GST C-terminal domain-like 141
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 133
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 134
EAL domain-like Nucleotide cyclase 1311
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 124
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 112
CheY-like C-terminal effector domain of the bipartite response regulators 111
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 103
TPR-like P-loop containing nucleoside triphosphate hydrolases 102
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 95
TPR-like TPR-like 97
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
Cytochrome c Cytochrome c 95
PYP-like sensor domain (PAS domain) Nucleotide cyclase 88
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
Calcium ATPase, transduction domain A HAD-like 86
DPP6 N-terminal domain-like alpha/beta-Hydrolases 82
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 87
HAD-like Calcium ATPase, transmembrane domain M 86
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 82
GroES-like NAD(P)-binding Rossmann-fold domains 82
Phospholipase D/nuclease Phospholipase D/nuclease 85
GAF domain-like EAL domain-like 86
Thiolase-like Thiolase-like 81
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 86
GAF domain-like Nucleotide cyclase 76
Homodimeric domain of signal transducing histidine kinase CheY-like 76
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 72
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 74
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 62
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 63
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 63
Alpha-L RNA-binding motif Pseudouridine synthase 62
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 63
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
(Trans)glycosidases Glycosyl hydrolase domain 64
PYP-like sensor domain (PAS domain) EAL domain-like 66
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 64
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 53
PreATP-grasp domain Rudiment single hybrid motif 52
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 51
Translation proteins EF-G C-terminal domain-like 53
EF-G C-terminal domain-like EF-G C-terminal domain-like 53
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
Cupredoxins Cupredoxins 54
CheY-like Homeodomain-like 53
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 53
Starch-binding domain-like Porins 52
Homeodomain-like Homeodomain-like 54
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
Nucleic acid-binding proteins RuvA domain 2-like 44
Galactose mutarotase-like Six-hairpin glycosidases 44
GAF domain-like GAF domain-like 43
ACT-like ACT-like 44
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 43
Triger factor/SurA peptide-binding domain-like FKBP-like 44
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 41
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 42
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
TPR-like Nucleotide cyclase 42
DNA methylase specificity domain DNA methylase specificity domain 42
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
PLP-binding barrel Alanine racemase C-terminal domain-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 42
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 41
CheY-like P-loop containing nucleoside triphosphate hydrolases 42
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 32
Nucleotidyltransferase HD-domain/PDEase-like 32
Trypsin-like serine proteases PDZ domain-like 32
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 32
HlyD-like secretion proteins HlyD-like secretion proteins 31
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
Histidine-containing phosphotransfer domain, HPT domain CheW-like 32
PYP-like sensor domain (PAS domain) CheY-like 32
TPR-like Clavaminate synthase-like 31
ParB/Sulfiredoxin KorB DNA-binding domain-like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 33
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
HD-domain/PDEase-like ACT-like 32
Nucleotidyltransferase ACT-like 32
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 31
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Translation proteins Ribosomal protein S5 domain 2-like 31
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PYP-like sensor domain (PAS domain) GAF domain-like 33
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Single hybrid motif CoA-dependent acyltransferases 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
PDZ domain-like PDZ domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
"Winged helix" DNA-binding domain PLP-dependent transferases 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
Cupredoxins Cytochrome c 21
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 21
"Winged helix" DNA-binding domain GAF domain-like 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
Flavoproteins Riboflavin synthase domain-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 21
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 21
FMN-linked oxidoreductases Nucleotide-binding domain 21
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 22
Calcium-dependent phosphotriesterase Homodimeric domain of signal transducing histidine kinase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 22
Calcium-dependent phosphotriesterase CheY-like 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
tRNA-binding arm Class II aaRS and biotin synthetases 22
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 22
Homodimeric domain of signal transducing histidine kinase CheW-like 21
Cytochrome c NTF2-like 22
ClpP/crotonase ClpP/crotonase 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
CheW-like CheY-like 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Nucleotide-binding domain FAD/NAD(P)-binding domain 21
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 21
PA domain Zn-dependent exopeptidases 22
HD-domain/PDEase-like TGS-like 21
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
HMA, heavy metal-associated domain HAD-like 22
CheY-like Nucleotide cyclase 22
PHP14-like Phospholipase D/nuclease 22
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 22
CheY-like CheY-like 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Homeodomain-like SIS domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
MFS general substrate transporter MFS general substrate transporter 21
Ferritin-like HAD-like 22
Lysozyme-like LysM domain 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Subtilisin-like Autotransporter 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
TGS-like ACT-like 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
HAMP domain-like CheY-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Galactose mutarotase-like Galactose mutarotase-like 22
Ferritin-like Calcium ATPase, transduction domain A 22
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Ferritin-like Calcium ATPase, transmembrane domain M 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
PPK N-terminal domain-like Phospholipase D/nuclease 22
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
DsbC/DsbG N-terminal domain-like Thioredoxin-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
PPK N-terminal domain-like PHP14-like 22
Nucleotidyltransferase TGS-like 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
PDZ domain-like ClpP/crotonase 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
FAD/NAD(P)-binding domain Glutathione synthetase ATP-binding domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Hedgehog/intein (Hint) domain PFL-like glycyl radical enzymes 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
PIN domain-like Ribonuclease H-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Barwin-like endoglucanases Sporulation related repeat 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
TSP type-3 repeat OmpA-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Sporulation related repeat Sporulation related repeat 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Nucleic acid-binding proteins GAD domain-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Single hybrid motif FAD/NAD(P)-binding domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
CheY-like Methylesterase CheB, C-terminal domain 11
Galactose mutarotase-like (Trans)glycosidases 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Acyl-CoA N-acyltransferases (Nat) GHMP Kinase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Homeodomain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Formyltransferase FMT C-terminal domain-like 11
Putative DNA-binding domain Ribonuclease H-like 11
Macro domain-like Zn-dependent exopeptidases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Tex N-terminal region-like RuvA domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Trigger factor ribosome-binding domain FKBP-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
FliG FliG 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
Regulatory protein AraC Homeodomain-like 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Molybdenum cofactor biosynthesis protein C, MoaC Molybdenum cofactor biosynthesis proteins 11
HAMP domain-like SpoIIaa-like 11
OMPA-like TSP type-3 repeat 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
TATA-box binding protein-like DNA-glycosylase 11
UROD/MetE-like UROD/MetE-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
HRDC-like HRDC-like 11
Carbamate kinase-like PUA domain-like 11
Putative DNA-binding domain Translation proteins 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
DNA-glycosylase Nudix 11
YrdC/RibB RibA-like 11
TolA/TonB C-terminal domain TolA/TonB C-terminal domain 11
PRTase-like alpha/beta-Hydrolases 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
GroES-like GroES-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
TPR-like C-type lectin-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
HisI-like all-alpha NTP pyrophosphatases 11
SGNH hydrolase Autotransporter 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
CBS-domain pair MgtE membrane domain-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Translation proteins ThrRS/AlaRS common domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
Zn-dependent exopeptidases Transferrin receptor-like dimerisation domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
C-terminal effector domain of the bipartite response regulators Protein kinase-like (PK-like) 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Homeodomain-like TATA-box binding protein-like 11
TerB-like Chaperone J-domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Thioredoxin-like Thioredoxin-like 11
"Winged helix" DNA-binding domain Nucleotidyltransferase 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Substrate-binding domain of HMG-CoA reductase Ribosomal protein S5 domain 2-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Periplasmic binding protein-like II MetI-like 11
Ribonuclease H-like RuvA domain 2-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Xylose isomerase-like Xylose isomerase-like 11
LysM domain Duplicated hybrid motif 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
E set domains Glycosyl hydrolase domain 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Protein kinase-like (PK-like) Galactose mutarotase-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase tRNA-binding arm 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
ClpP/crotonase NfeD domain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Phase 1 flagellin Phase 1 flagellin 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Zinc beta-ribbon DNA primase core 11
PLP-dependent transferases PLP-dependent transferases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Acyl-CoA N-acyltransferases (Nat) Ribosomal protein S5 domain 2-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Ribonuclease H-like HRDC-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
PreATP-grasp domain Single hybrid motif 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
RmlC-like cupins Homeodomain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Homeodomain-like mu transposase, C-terminal domain 11
CheY-like EAL domain-like 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Homeodomain-like DNA-glycosylase 11
ACT-like PLP-binding barrel 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
TGS-like ThrRS/AlaRS common domain 11
FAD-linked oxidoreductase ALDH-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Tricorn protease N-terminal domain PHP domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
MgtE N-terminal domain-like CBS-domain pair 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Homing endonucleases PFL-like glycyl radical enzymes 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
DNA clamp DNA clamp 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
HesB-like domain Rhodanese/Cell cycle control phosphatase 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
TGS-like Class II aaRS and biotin synthetases 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of B transposition protein 11
MalF N-terminal region-like MetI-like 11
RuvA domain 2-like BRCT domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
E set domains (Trans)glycosidases 11
NHL repeat Nucleotide cyclase 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
L30e-like alpha/beta knot 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Carboxypeptidase regulatory domain-like Porins 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Calcium-dependent phosphotriesterase NHL repeat 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
DeoB insert domain-like Alkaline phosphatase-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PUA domain-like alpha/beta knot 11
Protein kinase-like (PK-like) Six-hairpin glycosidases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PGBD-like Cysteine proteinases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Six-hairpin glycosidases Six-hairpin glycosidases 11
HAMP domain-like PP2C-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Thioredoxin-like TPR-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
GAF domain-like CheY-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ribonuclease H-like mu transposase, C-terminal domain 11
PA domain Transferrin receptor-like dimerisation domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
CarD-like TRCF domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
RuvA domain 2-like RuvA domain 2-like 11
Fibronectin type III Fibronectin type III 11
Carbamate kinase-like PLP-binding barrel 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
GroEL-intermediate domain like GroEL apical domain-like 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
RNase III domain-like dsRNA-binding domain-like 11
Translation proteins Translation proteins 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Putative DNA-binding domain mu transposase, C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Tex N-terminal region-like Ribonuclease H-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
FMN-binding split barrel GAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Cadherin-like Cadherin-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Rudiment single hybrid motif Single hybrid motif 11
Thioredoxin-like HesB-like domain 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
HAMP domain-like GAF domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Ankyrin repeat Ankyrin repeat 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
ISP domain Bet v1-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Clc chloride channel CBS-domain pair 11
Carbamate kinase-like Alanine racemase C-terminal domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Metalloproteases ("zincins"), catalytic domain Collagen-binding domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Zn-dependent exopeptidases Fibronectin type III 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
YajQ-like YajQ-like 11
SMAD/FHA domain GAF domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Periplasmic binding protein-like II LysM domain 11
Substrate-binding domain of HMG-CoA reductase GHMP Kinase, C-terminal domain 11
Cadherin-like Autotransporter 11
Nqo5-like HydB/Nqo4-like 11
Bacterial muramidases Lysozyme-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Collagen-binding domain Collagen-binding domain 11
Translation proteins PRC-barrel domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
HAD-like Ribosomal protein S5 domain 2-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
OMPA-like OmpA-like 11
Protein kinase-like (PK-like) Sensory domain-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Periplasmic binding protein-like II GlnB-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Periplasmic binding protein-like II ACT-like 11
Six-hairpin glycosidases HAD-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Thioredoxin-like Rhodanese/Cell cycle control phosphatase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
CheC-like Surface presentation of antigens (SPOA) 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Chorismate mutase II ACT-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Homeodomain-like Ribonuclease H-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
PP2C-like SpoIIaa-like 11
Nucleic acid-binding proteins BRCT domain 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
PurS-like FGAM synthase PurL, linker domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
EAL domain-like HD-domain/PDEase-like 11
Class I glutamine amidotransferase-like Homeodomain-like 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Sensory domain-like HAMP domain-like 11
Protein kinase-like (PK-like) TPR-like 11
Protein kinase-like (PK-like) HAMP domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
PurS-like PurM N-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
KorB DNA-binding domain-like Ribonuclease H-like 11
vWA-like TPR-like 11
Glycoside hydrolase/deacetylase Nucleotide-diphospho-sugar transferases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
PHP domain-like Concanavalin A-like lectins/glucanases 11
Zn-dependent exopeptidases LysM domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
HCP-like TolA/TonB C-terminal domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
PurS-like PurM C-terminal domain-like 11
Hsp33 domain HSP33 redox switch-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Galactose mutarotase-like HAD-like 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Rhodanese/Cell cycle control phosphatase Activating enzymes of the ubiquitin-like proteins 11
Toll/Interleukin receptor TIR domain TPR-like 11
NAD-binding domain of HMG-CoA reductase GHMP Kinase, C-terminal domain 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
NTF2-like NTF2-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Carbamate kinase-like ACT-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PHP domain-like Nucleic acid-binding proteins 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
PurS-like Class I glutamine amidotransferase-like 11
PreATP-grasp domain PreATP-grasp domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
ACT-like Alanine racemase C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
FKBP-like FKBP-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
TGS-like Class II aaRS ABD-related 11
NAD-binding domain of HMG-CoA reductase Ribosomal protein S5 domain 2-like 11
Nucleotidylyl transferase YegP-like 11
PIN domain-like DNA/RNA polymerases 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Ferritin-like Ferritin-like 11

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