SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Acidiphilium cryptum JF-5

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

666 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3915
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 281
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 234
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 169
Actin-like ATPase domain Actin-like ATPase domain 154
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 134
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 123
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 126
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 124
GroES-like NAD(P)-binding Rossmann-fold domains 122
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 111
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 112
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 105
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 103
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 94
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 96
Nucleotide cyclase EAL domain-like 95
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 92
CheY-like C-terminal effector domain of the bipartite response regulators 92
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 83
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 82
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 83
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 84
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 85
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 83
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 83
PYP-like sensor domain (PAS domain) Nucleotide cyclase 84
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 83
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 74
P-loop containing nucleoside triphosphate hydrolases MOP-like 71
Thioredoxin-like GST C-terminal domain-like 71
Resolvase-like Homeodomain-like 71
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 75
PYP-like sensor domain (PAS domain) EAL domain-like 74
Homeodomain-like Homeodomain-like 74
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Thiolase-like Thiolase-like 61
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 62
HAD-like Calcium ATPase, transmembrane domain M 64
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 62
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 64
PreATP-grasp domain Rudiment single hybrid motif 64
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 64
Calcium ATPase, transduction domain A HAD-like 64
Cytochrome c Cytochrome c 65
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 64
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 52
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 52
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 52
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 52
cAMP-binding domain-like "Winged helix" DNA-binding domain 52
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 55
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 52
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 52
CheY-like P-loop containing nucleoside triphosphate hydrolases 52
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
Triger factor/SurA peptide-binding domain-like FKBP-like 53
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 54
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 42
PurM N-terminal domain-like PurM C-terminal domain-like 42
TPR-like TPR-like 43
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
Class I glutamine amidotransferase-like Homeodomain-like 41
Translation proteins EF-G C-terminal domain-like 43
(Trans)glycosidases Glycosyl hydrolase domain 44
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 42
"Winged helix" DNA-binding domain GAF domain-like 41
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
CheY-like Homeodomain-like 41
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 44
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 42
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 41
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 42
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Nqo5-like HydB/Nqo4-like 31
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
ACT-like ACT-like 33
Rudiment single hybrid motif Single hybrid motif 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
PreATP-grasp domain Single hybrid motif 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
PYP-like sensor domain (PAS domain) CheY-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 33
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 31
Alpha-L RNA-binding motif Pseudouridine synthase 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 32
Nucleic acid-binding proteins RuvA domain 2-like 33
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 33
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 31
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 32
PLP-binding barrel Alanine racemase C-terminal domain-like 32
Homodimeric domain of signal transducing histidine kinase CheY-like 33
GAF domain-like EAL domain-like 33
Nqo1 middle domain-like Nqo1C-terminal domain-like 32
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 32
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 32
Glutathione synthetase ATP-binding domain-like Single hybrid motif 33
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
Clc chloride channel CBS-domain pair 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
MetI-like MetI-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Trypsin-like serine proteases PDZ domain-like 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Oxidoreductase molybdopterin-binding domain E set domains 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
alpha/beta-Hydrolases alpha/beta-Hydrolases 21
E set domains (Trans)glycosidases 22
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 22
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 22
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 22
TPR-like Nucleotide-diphospho-sugar transferases 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Carbamate kinase-like ACT-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
NTF2-like FAD/NAD(P)-binding domain 21
Pectin lyase-like Pectin lyase-like 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
ISP domain Bet v1-like 21
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
GroEL-intermediate domain like GroEL apical domain-like 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
PDZ domain-like PDZ domain-like 21
Bacterial muramidases Lysozyme-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
OMPA-like OmpA-like 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
HPr-like Phosphohistidine domain 22
GroEL equatorial domain-like GroEL apical domain-like 21
E set domains Glycosyl hydrolase domain 22
RuvA domain 2-like JAB1/MPN domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
"Winged helix" DNA-binding domain Chorismate lyase-like 21
PDZ domain-like ClpP/crotonase 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
CRISPR-associated protein CRISPR-associated protein 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
HPr-like Phosphoenolpyruvate/pyruvate domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
Nucleotide cyclase GAF domain-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
ClpP/crotonase ClpP/crotonase 22
CheY-like Methylesterase CheB, C-terminal domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
HlyD-like secretion proteins HlyD-like secretion proteins 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Single hybrid motif CoA-dependent acyltransferases 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Composite domain of metallo-dependent hydrolases SIS domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
PIN domain-like DNA/RNA polymerases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Ribbon-helix-helix ALDH-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Formyltransferase FMT C-terminal domain-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
PTS system fructose IIA component-like Phosphohistidine domain 11
Molybdenum cofactor-binding domain Bet v1-like 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein transmembrane domain-like 11
gp5 N-terminal domain-like Phage fibre proteins 11
4Fe-4S ferredoxins ADC-like 11
Homeodomain-like TATA-box binding protein-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Globin-like Riboflavin synthase domain-like 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
HCP-like HCP-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
Ribonuclease H-like DNA/RNA polymerases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
PPK N-terminal domain-like PHP14-like 11
MCP/YpsA-like "Winged helix" DNA-binding domain 11
Acyl-CoA N-acyltransferases (Nat) Nudix 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
PLP-dependent transferases PLP-dependent transferases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Class II aaRS and biotin synthetases Translation proteins 11
Nucleotidyltransferase TGS-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Ribonuclease H-like HRDC-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Periplasmic binding protein-like II ACT-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Globin-like EAL domain-like 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
alpha-helical ferredoxin Respiratory nitrate reductase 1 gamma chain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
GAF domain-like Homeodomain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Translation proteins PRC-barrel domain 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Poly A polymerase C-terminal region-like ACT-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Ferritin-like MFS general substrate transporter 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Methylesterase CheB, C-terminal domain C-terminal effector domain of the bipartite response regulators 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
CarD-like TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Cyclophilin-like PH0987 N-terminal domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
CO dehydrogenase molybdoprotein N-domain-like Bet v1-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
PRTase-like PRTase-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
Serine metabolism enzymes domain ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Methylglyoxal synthase-like Methylglyoxal synthase-like 11
NagB/RpiA/CoA transferase-like P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
PIN domain-like Ribonuclease H-like 11
Homeodomain-like Ribonuclease H-like 11
Translation proteins ThrRS/AlaRS common domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Cyclophilin-like Cyclophilin-like 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Aldolase Single hybrid motif 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Aldolase SIS domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Cyclophilin-like Single hybrid motif 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
TPR-like Glutathione synthetase ATP-binding domain-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
L30e-like alpha/beta knot 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
RmlC-like cupins RmlC-like cupins 11
Rudiment single hybrid motif post-HMGL domain-like 11
GAF domain-like GAF domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Phage tail proteins Phage fibre proteins 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
DNA-glycosylase Nudix 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PTS system fructose IIA component-like HPr-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
RNase III domain-like dsRNA-binding domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
ACT-like Formyltransferase 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Single hybrid motif TK C-terminal domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
PH0987 N-terminal domain-like Single hybrid motif 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Rudiment single hybrid motif Cyclophilin-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Nucleotide cyclase SMAD/FHA domain 11
Ribokinase-like Nucleotidylyl transferase 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
YjeF N-terminal domain-like Ribokinase-like 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
post-HMGL domain-like Single hybrid motif 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Nudix "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Thioredoxin-like Nqo1 middle domain-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
PTS system fructose IIA component-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Aldolase post-HMGL domain-like 11
Ribosome binding protein Y (YfiA homologue) Nucleic acid-binding proteins 11
Subtilisin-like Autotransporter 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
PreATP-grasp domain post-HMGL domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Carbamate kinase-like PUA domain-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
Galactose mutarotase-like Galactose mutarotase-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
DNA clamp DNA clamp 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Homeodomain-like SIS domain 11
Nucleic acid-binding proteins GAD domain-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
Rudiment single hybrid motif Aldolase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Ribosomal protein L6 Ribosomal protein L6 11
SGNH hydrolase Autotransporter 11
RuvA domain 2-like BRCT domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Translation proteins Translation proteins 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
HRDC-like HRDC-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
YrdC/RibB RibA-like 11
EspE N-terminal domain-like Nucleotide-diphospho-sugar transferases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain C-terminal effector domain of the bipartite response regulators 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
PUA domain-like alpha/beta knot 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PreATP-grasp domain Cyclophilin-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Nucleic acid-binding proteins BRCT domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
S-adenosyl-L-methionine-dependent methyltransferases C-terminal effector domain of the bipartite response regulators 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Hsp33 domain HSP33 redox switch-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
P-loop containing nucleoside triphosphate hydrolases Microbial and mitochondrial ADK, insert "zinc finger" domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
(Trans)glycosidases (Trans)glycosidases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
TerB-like Chaperone J-domain 11
FAD-linked oxidoreductase ALDH-like 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Metallo-dependent hydrolases SIS domain 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Homocysteine S-methyltransferase Methionine synthase domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Thioredoxin-like Six-hairpin glycosidases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
lambda repressor-like DNA-binding domains S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
TGS-like Class II aaRS ABD-related 11
alpha-helical ferredoxin Nucleotide-binding domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
PTS system fructose IIA component-like Phosphoenolpyruvate/pyruvate domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Macro domain-like Zn-dependent exopeptidases 11
beta-Roll beta-Roll 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Homodimeric domain of signal transducing histidine kinase C-terminal effector domain of the bipartite response regulators 11
HMA, heavy metal-associated domain HAD-like 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Globin-like GAF domain-like 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
TGS-like Class II aaRS and biotin synthetases 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
E set domains E set domains 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, catalytic domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
CheY-like CheY-like 11
FliG FliG 11
lambda repressor-like DNA-binding domains Class I glutamine amidotransferase-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Thioredoxin-like TPR-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Cupredoxins Cupredoxins 11
Regulatory protein AraC Homeodomain-like 11
alpha/beta-Hydrolases AhpD-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Flavoproteins Riboflavin synthase domain-like 11
Phage tail proteins Phage tail proteins 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
4Fe-4S ferredoxins HydA/Nqo6-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
D-ribose-5-phosphate isomerase (RpiA), lid domain P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Zinc beta-ribbon DNA primase core 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase ACT-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
PHP14-like Phospholipase D/nuclease 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Homeodomain-like DNA-glycosylase 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
GroES-like GroES-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase C-terminal effector domain of the bipartite response regulators 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
Putative DNA-binding domain Resolvase-like 11
PTS system IIB component-like PTS system IIB component-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Pectin lyase-like Autotransporter 11
Nucleotidylyl transferase tRNA-binding arm 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Metallo-dependent phosphatases Radical SAM enzymes 11
DNA-binding pseudobarrel domain Restriction endonuclease-like 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
2Fe-2S ferredoxin-like ADC-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
S-adenosyl-L-methionine-dependent methyltransferases Tropomyosin 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Methionine synthase domain Methionine synthase activation domain-like 11
YlxR-like L30e-like 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
TATA-box binding protein-like DNA-glycosylase 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, peptide-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
UROD/MetE-like UROD/MetE-like 11
lambda repressor-like DNA-binding domains Carbamoyl phosphate synthetase, small subunit N-terminal domain 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Phage tail proteins gp5 N-terminal domain-like 11
GAF domain-like Phosphohistidine domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Phoshotransferase/anion transport protein HPr-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
PreATP-grasp domain Aldolase 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
TGS-like ThrRS/AlaRS common domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Inosine monophosphate dehydrogenase (IMPDH) Nitrite and sulphite reductase 4Fe-4S domain-like 11
HD-domain/PDEase-like TGS-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11

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