SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Pseudomonas brassicacearum subsp. brassicacearum NFM421

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

838 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1301
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 7131
Homeodomain-like Homeodomain-like 408
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3714
CheY-like C-terminal effector domain of the bipartite response regulators 352
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2821
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 2510
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 253
CheY-like Homodimeric domain of signal transducing histidine kinase 2518
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 246
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 233
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 225
GroES-like NAD(P)-binding Rossmann-fold domains 222
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2115
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 211
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 212
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 204
Nucleotide cyclase EAL domain-like 2012
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1913
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 195
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1812
P-loop containing nucleoside triphosphate hydrolases MOP-like 181
Thioredoxin-like GST C-terminal domain-like 172
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1715
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 165
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 161
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 156
Thiolase-like Thiolase-like 152
Actin-like ATPase domain Actin-like ATPase domain 145
Class I glutamine amidotransferase-like Homeodomain-like 132
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 135
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 132
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 123
Acetyl-CoA synthetase-like ACP-like 1211
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 123
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 123
PYP-like sensor domain (PAS domain) EAL domain-like 128
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 126
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 126
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 123
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 126
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 123
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 123
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 1110
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 115
"Winged helix" DNA-binding domain GAF domain-like 111
CoA-dependent acyltransferases CoA-dependent acyltransferases 1110
"Winged helix" DNA-binding domain PLP-dependent transferases 111
CheY-like PYP-like sensor domain (PAS domain) 107
CheY-like P-loop containing nucleoside triphosphate hydrolases 103
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 103
CheY-like Homeodomain-like 102
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 102
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 103
CoA-dependent acyltransferases ACP-like 109
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 92
RmlC-like cupins Homeodomain-like 92
Calcium ATPase, transduction domain A HAD-like 88
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 86
Phage tail proteins Phage tail proteins 85
Enolase N-terminal domain-like Enolase C-terminal domain-like 81
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 86
PYP-like sensor domain (PAS domain) GAF domain-like 88
PYP-like sensor domain (PAS domain) Homeodomain-like 86
Calcium ATPase, transmembrane domain M HAD-like 88
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 88
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 85
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 81
Regulatory protein AraC Homeodomain-like 82
PreATP-grasp domain Rudiment single hybrid motif 73
Folate-binding domain Aminomethyltransferase beta-barrel domain 73
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Phospholipase D/nuclease Phospholipase D/nuclease 74
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 77
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Phage tail proteins gp5 N-terminal domain-like 74
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 73
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 73
ISP domain Bet v1-like 62
ACT-like ACT-like 63
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 61
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 64
GAF domain-like Homeodomain-like 63
Cytochrome c Cytochrome c 63
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 66
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 64
"Winged helix" DNA-binding domain Chorismate lyase-like 61
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 62
ACP-like ACP-like 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
cAMP-binding domain-like "Winged helix" DNA-binding domain 61
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 61
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 61
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 52
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 53
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 54
MetI-like MetI-like 52
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
Homeodomain-like SIS domain 51
CheY-like CheY-like 55
CheW-like CheY-like 54
Histidine-containing phosphotransfer domain, HPT domain CheW-like 53
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 53
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 55
PLP-binding barrel Alanine racemase C-terminal domain-like 52
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 55
CheY-like Histidine-containing phosphotransfer domain, HPT domain 55
Alpha-L RNA-binding motif Pseudouridine synthase 52
GAF domain-like Homodimeric domain of signal transducing histidine kinase 55
CheY-like Nucleotide cyclase 54
lambda repressor-like DNA-binding domains RmlC-like cupins 51
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 43
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 42
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 43
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 42
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 44
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 43
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 41
ACT-like Formyltransferase 41
Nucleic acid-binding proteins RuvA domain 2-like 44
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 41
Phage tail proteins Phage fibre proteins 42
(Trans)glycosidases Glycosyl hydrolase domain 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 42
GAF domain-like Nucleotide cyclase 44
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
gp5 N-terminal domain-like Phage fibre proteins 42
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 41
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 43
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
CBS-domain pair FAD-binding/transporter-associated domain-like 41
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 44
beta-Roll beta-Roll 44
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 43
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 32
HPr-like Phosphoenolpyruvate/pyruvate domain 32
PreATP-grasp domain Single hybrid motif 32
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 32
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Single hybrid motif CoA-dependent acyltransferases 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 32
HAMP domain-like CheY-like 33
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Homodimeric domain of signal transducing histidine kinase CheW-like 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
HPr-like Phosphohistidine domain 32
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 31
E set domains (Trans)glycosidases 33
Aldolase post-HMGL domain-like 32
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 31
Nucleotidyltransferase ACT-like 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Translation proteins EF-G C-terminal domain-like 33
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 32
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 32
HD-domain/PDEase-like ACT-like 32
HMA, heavy metal-associated domain HAD-like 33
Lysozyme-like beta-lactamase/transpeptidase-like 32
CheY-like EAL domain-like 32
CheY-like HD-domain/PDEase-like 31
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 33
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 32
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
TSP type-3 repeat OmpA-like 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
HD-domain/PDEase-like Nucleotidyltransferase 32
LeuD/IlvD-like Aconitase iron-sulfur domain 33
ACT-like P-loop containing nucleoside triphosphate hydrolases 32
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
CheY-like Methylesterase CheB, C-terminal domain 31
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
lambda repressor-like DNA-binding domains LexA/Signal peptidase 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 33
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Glutathione synthetase ATP-binding domain-like Single hybrid motif 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Rudiment single hybrid motif Single hybrid motif 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
TPR-like TPR-like 33
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
HAMP domain-like PYP-like sensor domain (PAS domain) 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
Acetyl-CoA synthetase-like Clavaminate synthase-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Cupredoxins Cupredoxins 22
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 22
2Fe-2S ferredoxin-like ADC-like 21
TGS-like ACT-like 21
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 22
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
vWA-like beta-Roll 22
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
PDZ domain-like PDZ domain-like 22
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 22
PK beta-barrel domain-like PK C-terminal domain-like 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
TPR-like C-terminal effector domain of the bipartite response regulators 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
alpha-helical ferredoxin Nucleotide-binding domain 22
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 22
Ribonuclease H-like DNA/RNA polymerases 22
Calcium-dependent phosphotriesterase beta-Roll 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
ClpP/crotonase ClpP/crotonase 21
HD-domain/PDEase-like TGS-like 21
GAF domain-like EAL domain-like 22
PUA domain-like Ribosomal protein S5 domain 2-like 22
FAD/NAD(P)-binding domain Folate-binding domain 21
Nitrous oxide reductase, N-terminal domain Cupredoxins 21
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
GroES-like GroES-like 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
ACP-like Clavaminate synthase-like 22
Pectin lyase-like Autotransporter 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 22
RuvA domain 2-like RuvA domain 2-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 22
GAF domain-like CheY-like 22
Periplasmic binding protein-like II CheY-like 22
"Winged helix" DNA-binding domain LexA/Signal peptidase 21
Periplasmic binding protein-like II Lysozyme-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
DsbC/DsbG N-terminal domain-like Thioredoxin-like 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Nucleotidyltransferase TGS-like 21
ACP-like alpha/beta-Hydrolases 21
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Galactose mutarotase-like E set domains 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Duplicated hybrid motif Phosphohistidine domain 21
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
CoA-dependent acyltransferases Clavaminate synthase-like 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
YrdC/RibB RibA-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Translation proteins ThrRS/AlaRS common domain 22
CoA-dependent acyltransferases alpha/beta-Hydrolases 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 21
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
4Fe-4S ferredoxins ADC-like 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 22
Duplicated hybrid motif HPr-like 21
P-loop containing nucleoside triphosphate hydrolases TPR-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Flavoproteins Riboflavin synthase domain-like 21
PH0987 N-terminal domain-like Cyclophilin-like 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
Formyltransferase FMT C-terminal domain-like 22
Trypsin-like serine proteases PDZ domain-like 22
PDZ domain-like ClpP/crotonase 21
E set domains Glycosyl hydrolase domain 22
Homeodomain-like Probable bacterial effector-binding domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
LysM domain LysM domain 11
Protein kinase-like (PK-like) vWA-like 11
Nucleotidylyl transferase YegP-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PreATP-grasp domain Cyclophilin-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
PLP-dependent transferases PLP-dependent transferases 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Metallo-hydrolase/oxidoreductase Rubredoxin-like 11
Nudix Nudix 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
ACT-like HAD-like 11
beta-Roll Cadherin-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
alpha/beta-Hydrolases Glutathione synthetase ATP-binding domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
GAF domain-like HD-domain/PDEase-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Pili subunits GspK insert domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Carbamate kinase-like ACT-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
RNase III domain-like dsRNA-binding domain-like 11
CBS-domain pair MgtE membrane domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
FMN-binding split barrel "Winged helix" DNA-binding domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Methionine synthase domain Methionine synthase activation domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
FKBP-like FKBP-like 11
Tricorn protease domain 2 alpha/beta-Hydrolases 11
CBS-domain pair Nucleotide cyclase 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Periplasmic binding protein-like II OmpA-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
FliG FliG 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Cyclophilin-like Cyclophilin-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
P-loop containing nucleoside triphosphate hydrolases Lysozyme-like 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
CarD-like TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
FMN-binding split barrel Riboflavin synthase domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
ACT-like PYP-like sensor domain (PAS domain) 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
CheY-like CheC-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
RmlC-like cupins RmlC-like cupins 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
HRDC-like HRDC-like 11
S-adenosyl-L-methionine-dependent methyltransferases FAD/NAD(P)-binding domain 11
DNA-glycosylase Nudix 11
vWA-like TPR-like 11
PurS-like FGAM synthase PurL, linker domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
PP2C-like Protein kinase-like (PK-like) 11
CheC-like Surface presentation of antigens (SPOA) 11
PRTase-like PRTase-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Protein kinase-like (PK-like) GAF domain-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
JAB1/MPN domain Cysteine proteinases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
CheY-like TPR-like 11
YbaK/ProRS associated domain HD-domain/PDEase-like 11
Single hybrid motif alpha/beta-Hydrolases 11
PHP14-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
L30e-like alpha/beta knot 11
beta-Roll SGNH hydrolase 11
Pili subunits RuvA domain 2-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Periplasmic binding protein-like II ACT-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
ISP domain FAD/NAD(P)-binding domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
TGS-like Class II aaRS ABD-related 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
alpha/beta-Hydrolases beta-Roll 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Cadherin-like Cadherin-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PPK N-terminal domain-like PHP14-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
PUA domain-like alpha/beta knot 11
Chorismate mutase II ACT-like 11
EF-hand EF-hand 11
Barwin-like endoglucanases Sporulation related repeat 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Ribonuclease H-like HRDC-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Zinc beta-ribbon DNA primase core 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
YegP-like YegP-like 11
Rudiment single hybrid motif Cyclophilin-like 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Caspase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidylyl transferase tRNA-binding arm 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Ribonuclease H-like RuvA domain 2-like 11
FMT C-terminal domain-like ClpP/crotonase 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
SCP-like Clavaminate synthase-like 11
Lysozyme-like LysM domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
TGS-like ThrRS/AlaRS common domain 11
RNI-like RNI-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
PIN domain-like Ribonuclease H-like 11
Ribokinase-like Nucleotidylyl transferase 11
Lysozyme-like PGBD-like 11
lambda repressor-like DNA-binding domains TPR-like 11
SGNH hydrolase Autotransporter 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
post-HMGL domain-like Single hybrid motif 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Trigger factor ribosome-binding domain FKBP-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
PIN domain-like DNA/RNA polymerases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Thioredoxin-like Nqo1 middle domain-like 11
Single hybrid motif Single hybrid motif 11
Nucleotide-diphospho-sugar transferases EspE N-terminal domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Dihydropteroate synthetase-like Methionine synthase domain 11
alpha/beta-Hydrolases Phosphohistidine domain 11
Hsp33 domain HSP33 redox switch-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
WD40 repeat-like MetI-like 11
Subtilisin-like Autotransporter 11
OMPA-like TSP type-3 repeat 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
FAD/NAD(P)-binding domain alpha/beta-Hydrolases 11
ACT-like Homeodomain-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
UROD/MetE-like UROD/MetE-like 11
TGS-like Class II aaRS and biotin synthetases 11
ARM repeat TPR-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Periplasmic binding protein-like II EAL domain-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Homocysteine S-methyltransferase Methionine synthase domain 11
(Phosphotyrosine protein) phosphatases II FAD/NAD(P)-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
DNA clamp DNA clamp 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Cadherin-like SGNH hydrolase 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Protein kinase-like (PK-like) PYP-like sensor domain (PAS domain) 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Zn-dependent exopeptidases LysM domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
PurS-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
GIY-YIG endonuclease RuvA domain 2-like 11
Inosine monophosphate dehydrogenase (IMPDH) Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Thioredoxin-like Thioredoxin-like 11
Nucleic acid-binding proteins GAD domain-like 11
Periplasmic binding protein-like I Periplasmic binding protein-like I 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
CalX-like beta-Roll 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
RuvA domain 2-like BRCT domain 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
Pectin lyase-like Cadherin-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
L domain-like Protein kinase-like (PK-like) 11
Nucleic acid-binding proteins PheT/TilS domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
P-loop containing nucleoside triphosphate hydrolases UDP-Glycosyltransferase/glycogen phosphorylase 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Translation proteins 11
GAF domain-like GAF domain-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Globin-like Riboflavin synthase domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
GspK insert domain-like RuvA domain 2-like 11
PurS-like PurM N-terminal domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
cAMP-binding domain-like CBS-domain pair 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Tex N-terminal region-like RuvA domain 2-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Phoshotransferase/anion transport protein HPr-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
YajQ-like YajQ-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
PheT/TilS domain Putative DNA-binding domain 11
HD-domain/PDEase-like C-terminal effector domain of the bipartite response regulators 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
Ribbon-helix-helix ALDH-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
Pseudouridine synthase PUA domain-like 11
NTF2-like Sec-C motif 11
HCP-like HCP-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
PHP domain-like AF1531-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
FAD-linked oxidoreductase ALDH-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
Glucose permease domain IIB Glucose permease domain IIB 11
PreATP-grasp domain Methylglyoxal synthase-like 11
"Winged helix" DNA-binding domain MOP-like 11
Translation proteins PRC-barrel domain 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Thioredoxin-like TPR-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
Periplasmic binding protein-like I Homeodomain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
NHL repeat Calcium-dependent phosphotriesterase 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
GroEL-intermediate domain like GroEL apical domain-like 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
EspE N-terminal domain-like EspE N-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Cyclophilin-like Single hybrid motif 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
Nudix "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases beta-lactamase/transpeptidase-like 11
Formyltransferase ClpP/crotonase 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CalX-like vWA-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Cupredoxins Cytochrome c 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nudix Thiamin phosphate synthase 11
Acyl-CoA N-acyltransferases (Nat) Glutathione synthetase ATP-binding domain-like 11
PurS-like PurM C-terminal domain-like 11
PH0987 N-terminal domain-like Single hybrid motif 11
YjeF N-terminal domain-like Ribokinase-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Nqo5-like HydB/Nqo4-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
NE0471 N-terminal domain-like lambda repressor-like DNA-binding domains 11
Pili subunits Pili subunits 11
PTS system IIB component-like PTS system IIB component-like 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Carbamate kinase-like PUA domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Putative DNA-binding domain Translation proteins 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
alpha-D-mannose-specific plant lectins Ricin B-like lectins 11
Fic-like "Winged helix" DNA-binding domain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Pectin lyase-like beta-Roll 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Phage fibre proteins Phage fibre proteins 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Nucleic acid-binding proteins BRCT domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Flavoproteins Rubredoxin-like 11
Aldolase Single hybrid motif 11
Bacterial muramidases Lysozyme-like 11
RmlC-like cupins AhpD-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
RuvA domain 2-like JAB1/MPN domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Macro domain-like Zn-dependent exopeptidases 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
GAF domain-like Phosphohistidine domain 11
Phase 1 flagellin Phase 1 flagellin 11
MOP-like MOP-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Pectin lyase-like SGNH hydrolase 11
Thermostable phytase (3-phytase) Thermostable phytase (3-phytase) 11
ALDH-like Acetyl-CoA synthetase-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
NHL repeat beta-Roll 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
OMPA-like OmpA-like 11
E set domains E set domains 11
EAL domain-like CBS-domain pair 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Class II aaRS and biotin synthetases GAD domain-like 11

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