SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Pseudovibrio sp. FO-BEG1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

737 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 671
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3913
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3216
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 321
P-loop containing nucleoside triphosphate hydrolases MOP-like 271
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 272
Homeodomain-like Homeodomain-like 247
Thioredoxin-like GST C-terminal domain-like 222
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 214
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 212
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 203
CheY-like C-terminal effector domain of the bipartite response regulators 193
NAD(P)-binding Rossmann-fold domains GroES-like 195
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 184
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 181
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 184
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 153
Actin-like ATPase domain Actin-like ATPase domain 157
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 156
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 141
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 111
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 116
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 115
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 115
Cytochrome c Cytochrome c 104
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 103
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 105
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 97
Nucleotide cyclase EAL domain-like 96
beta-Roll beta-Roll 98
Homodimeric domain of signal transducing histidine kinase CheY-like 98
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 98
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 97
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 93
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 83
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 86
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 83
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
cAMP-binding domain-like "Winged helix" DNA-binding domain 81
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 86
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 86
Class I glutamine amidotransferase-like Homeodomain-like 82
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 81
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 86
Thiolase-like Thiolase-like 81
"Winged helix" DNA-binding domain GAF domain-like 82
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
PreATP-grasp domain Rudiment single hybrid motif 73
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 75
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 72
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 72
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 75
Folate-binding domain Aminomethyltransferase beta-barrel domain 73
Enolase N-terminal domain-like Enolase C-terminal domain-like 71
CheY-like P-loop containing nucleoside triphosphate hydrolases 61
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 64
Calcium ATPase, transduction domain A HAD-like 63
MetI-like MetI-like 63
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 63
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 62
FAD/NAD(P)-binding domain Folate-binding domain 62
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 63
CheY-like Homeodomain-like 61
Thiolase-like ACP-like 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
HAD-like Calcium ATPase, transmembrane domain M 63
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
CoA-dependent acyltransferases CoA-dependent acyltransferases 55
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 51
(Trans)glycosidases Glycosyl hydrolase domain 55
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 52
Acetyl-CoA synthetase-like ACP-like 55
Homeodomain-like Ribonuclease H-like 51
CoA-dependent acyltransferases ACP-like 55
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 55
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
ACT-like ACT-like 53
PLP-binding barrel Alanine racemase C-terminal domain-like 52
PYP-like sensor domain (PAS domain) EAL domain-like 55
PYP-like sensor domain (PAS domain) Nucleotide cyclase 55
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 51
ISP domain Bet v1-like 52
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 54
RmlC-like cupins Homeodomain-like 53
CheY-like Histidine-containing phosphotransfer domain, HPT domain 43
FAD-linked reductases, C-terminal domain Folate-binding domain 41
"Winged helix" DNA-binding domain PLP-dependent transferases 41
PreATP-grasp domain Single hybrid motif 42
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 44
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 41
Metalloproteases ("zincins"), catalytic domain beta-Roll 44
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 41
(Trans)glycosidases Class I glutamine amidotransferase-like 42
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
NTF2-like NTF2-like 41
Glutathione synthetase ATP-binding domain-like Single hybrid motif 42
HCP-like HCP-like 44
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
PYP-like sensor domain (PAS domain) CheY-like 44
Translation proteins EF-G C-terminal domain-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 43
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 43
Rudiment single hybrid motif Single hybrid motif 42
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 42
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 41
FKBP-like Triger factor/SurA peptide-binding domain-like 43
FabD/lysophospholipase-like ACP-like 44
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 43
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 44
"Winged helix" DNA-binding domain Chorismate lyase-like 31
ACP-like ACP-like 33
Thiolase-like FabD/lysophospholipase-like 33
PGBD-like L,D-transpeptidase catalytic domain-like 31
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 31
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 33
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 32
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 31
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Lysozyme-like beta-lactamase/transpeptidase-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
PDZ domain-like PDZ domain-like 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Phage tail proteins Phage fibre proteins 32
Pectin lyase-like Autotransporter 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 31
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
ACT-like Formyltransferase 31
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
HMA, heavy metal-associated domain HAD-like 32
Cupredoxins Cupredoxins 31
ClpP/crotonase ClpP/crotonase 31
HlyD-like secretion proteins HlyD-like secretion proteins 31
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
TPR-like TPR-like 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
GroES-like GroES-like 31
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 31
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Alpha-L RNA-binding motif Pseudouridine synthase 32
Phage tail proteins Phage tail proteins 32
Phage tail proteins gp5 N-terminal domain-like 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 31
gp5 N-terminal domain-like Phage fibre proteins 32
Homeodomain-like SIS domain 31
Pectin lyase-like Pectin lyase-like 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 33
4Fe-4S ferredoxins 2Fe-2S ferredoxin-like 33
Trypsin-like serine proteases PDZ domain-like 31
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 31
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 21
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
FabD/lysophospholipase-like Acetyl-CoA synthetase-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Thiolase-like GroES-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Translation proteins ThrRS/AlaRS common domain 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
MgtE N-terminal domain-like MgtE membrane domain-like 21
FabD/lysophospholipase-like GroES-like 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
HPr-like Phosphoenolpyruvate/pyruvate domain 22
beta-Roll Cadherin-like 22
Nucleotidyltransferase ACT-like 22
CBS-domain pair MgtE membrane domain-like 21
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Thiolase-like Acetyl-CoA synthetase-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Thiolase-like CoA-dependent acyltransferases 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
GroES-like ACP-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Collagen-binding domain Metalloproteases ("zincins"), catalytic domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 21
MgtE N-terminal domain-like CBS-domain pair 21
FliG FliG 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 22
L30e-like alpha/beta knot 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Single hybrid motif CoA-dependent acyltransferases 22
Thiolase-like NAD(P)-binding Rossmann-fold domains 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
CheC-like Surface presentation of antigens (SPOA) 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Collagen-binding domain beta-Roll 22
MalF N-terminal region-like MetI-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 22
Galactose mutarotase-like Glycosyl hydrolase domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
NAD(P)-binding Rossmann-fold domains ACP-like 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
FabD/lysophospholipase-like CoA-dependent acyltransferases 22
Homeodomain-like Probable bacterial effector-binding domain 21
HPr-like Phosphohistidine domain 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Galactose mutarotase-like (Trans)glycosidases 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
CheY-like Nucleotide cyclase 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Nucleotidylyl transferase Alpha-L RNA-binding motif 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Single hybrid motif Single hybrid motif 11
Chelatase Chelatase 11
Calcium-dependent phosphotriesterase Autotransporter 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
PUA domain-like alpha/beta knot 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Nucleotide-binding domain Nucleotide-binding domain 11
Duplicated hybrid motif PLP-dependent transferases 11
PTS system fructose IIA component-like Phosphoenolpyruvate/pyruvate domain 11
PHP domain-like AF1531-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
YlxR-like L30e-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Acyl-CoA N-acyltransferases (Nat) Nudix 11
dUTPase-like dUTPase-like 11
Ammonium transporter EAL domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nucleotidyltransferase TGS-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
PreATP-grasp domain post-HMGL domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 11
Galactose-binding domain-like beta-Roll 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Poly A polymerase C-terminal region-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases GroES-like 11
4Fe-4S ferredoxins Radical SAM enzymes 11
post-HMGL domain-like Single hybrid motif 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
Glucose permease domain IIB Glucose permease domain IIB 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
CheY-like EAL domain-like 11
ACP-like FMN-dependent nitroreductase-like 11
Hedgehog/intein (Hint) domain beta-Roll 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
ISP domain FMN-linked oxidoreductases 11
YrdC/RibB RibA-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Duplicated hybrid motif HPr-like 11
CheW-like CheY-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
3-carboxy-cis,cis-mucoante lactonizing enzyme NHL repeat 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
TGS-like ACT-like 11
AGR C 984p-like AGR C 984p-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Carbamate kinase-like ACT-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Rudiment single hybrid motif post-HMGL domain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
HCP-like PGBD-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Ribosomal protein L6 Ribosomal protein L6 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleic acid-binding proteins GAD domain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
CoA-dependent acyltransferases FMN-dependent nitroreductase-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 11
PDZ domain-like ClpP/crotonase 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Phage fibre proteins Phage fibre proteins 11
beta-Roll CalX-like 11
ADC synthase Class I glutamine amidotransferase-like 11
Serine metabolism enzymes domain ACT-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Ammonium transporter PYP-like sensor domain (PAS domain) 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Aldolase Single hybrid motif 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
RuvA domain 2-like JAB1/MPN domain 11
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
ALDH-like Dehydroquinate synthase-like 11
Apolipoprotein A-I Apolipoprotein A-I 11
Translation proteins Translation proteins 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Hedgehog/intein (Hint) domain Integrin alpha N-terminal domain 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
PilZ domain-like PilZ domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
cAMP-binding domain-like Nucleotidyltransferase 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Ribonuclease H-like RuvA domain 2-like 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
FAD-linked oxidoreductase ALDH-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like HRDC-like 11
Integrin alpha N-terminal domain beta-Roll 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
HAMP domain-like EAL domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
GAF domain-like Nucleotide cyclase 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
alpha/beta-Hydrolases beta-Roll 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
DNA clamp DNA clamp 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Thioredoxin-like TPR-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Putative DNA-binding domain Citrate synthase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
DNA methylase specificity domain DNA methylase specificity domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Thiolase-like FMN-dependent nitroreductase-like 11
HD-domain/PDEase-like ACT-like 11
Galactose mutarotase-like E set domains 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
TerB-like Chaperone J-domain 11
TGS-like ThrRS/AlaRS common domain 11
4Fe-4S ferredoxins ADC-like 11
Activating enzymes of the ubiquitin-like proteins Rhodanese/Cell cycle control phosphatase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
CobE/GbiG C-terminal domain-like Tetrapyrrole methylase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
HRDC-like HRDC-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Zinc beta-ribbon DNA primase core 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Multiheme cytochromes 11
Nudix "Winged helix" DNA-binding domain 11
PIN domain-like Ribonuclease H-like 11
CheW-like CheW-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Ammonium transporter Nucleotide cyclase 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
PreATP-grasp domain Aldolase 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
E set domains alpha/beta-Hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Cadherin-like DNase I-like 11
FAD/NAD(P)-binding domain NAD(P)-binding Rossmann-fold domains 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PTS system fructose IIA component-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Periplasmic binding protein-like II ACT-like 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
PHP14-like Phospholipase D/nuclease 11
DeoB insert domain-like Alkaline phosphatase-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Acetyl-CoA synthetase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Hsp33 domain HSP33 redox switch-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
lambda repressor-like DNA-binding domains YrdC/RibB 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
YjeF N-terminal domain-like Ribokinase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
NHL repeat beta-Roll 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
alpha-helical ferredoxin ARM repeat 11
Restriction endonuclease-like "Winged helix" DNA-binding domain 11
Nucleic acid-binding proteins BRCT domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
3-carboxy-cis,cis-mucoante lactonizing enzyme Multiheme cytochromes 11
CBS-domain pair Nucleotidyltransferase 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
lambda repressor-like DNA-binding domains RibA-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
PTS system fructose IIA component-like Phosphohistidine domain 11
Class I glutamine amidotransferase-like Glycosyl hydrolase domain 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
Thioredoxin-like Six-hairpin glycosidases 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Regulatory protein AraC Homeodomain-like 11
PGBD-like PGBD-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Carbamate kinase-like PUA domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like DNA/RNA polymerases 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Nucleotidylyl transferase tRNA-binding arm 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 11
LmbE-like Class I glutamine amidotransferase-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
YceI-like Cytochrome c 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Aldolase post-HMGL domain-like 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Cadherin-like CalX-like 11
Rudiment single hybrid motif Aldolase 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Thioredoxin-like Nqo1 middle domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Voltage-gated potassium channels cAMP-binding domain-like 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
"Winged helix" DNA-binding domain Calcium-dependent phosphotriesterase 11
Nucleic acid-binding proteins PheT/TilS domain 11
DNA-glycosylase Nudix 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
QueA-like tRNA-guanine transglycosylase 11
Class II aaRS and biotin synthetases GAD domain-like 11
PTS system fructose IIA component-like HPr-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
PreATP-grasp domain PreATP-grasp domain 11
RmlC-like cupins RmlC-like cupins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Galactose-binding domain-like (Trans)glycosidases 11
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Metallo-hydrolase/oxidoreductase SCP-like 11
Lysozyme-like PGBD-like 11
RuvA domain 2-like BRCT domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
HAMP domain-like Nucleotide cyclase 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Macro domain-like Zn-dependent exopeptidases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
GAF domain-like Calcium-dependent phosphotriesterase 11
alpha/beta-Hydrolases AhpD-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
TGS-like Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
ARM repeat ARM repeat 11
GAF domain-like Phosphohistidine domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
GIY-YIG endonuclease RuvA domain 2-like 11
TGS-like Class II aaRS and biotin synthetases 11
RuvA domain 2-like RuvA domain 2-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Single hybrid motif TK C-terminal domain-like 11
CoA-dependent acyltransferases GroES-like 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
EF-hand EF-hand 11
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
YebC-like PFL-like glycyl radical enzymes 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Trigger factor ribosome-binding domain FKBP-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
PIN domain-like DNA/RNA polymerases 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
2Fe-2S ferredoxin-like ADC-like 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
cAMP-binding domain-like CBS-domain pair 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
PPK N-terminal domain-like PHP14-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
PheT/TilS domain Putative DNA-binding domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
CheY-like CheY-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Acetyl-CoA synthetase-like GroES-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
CalX-like DNase I-like 11
HD-domain/PDEase-like TGS-like 11
CarD-like TRCF domain-like 11
Translation proteins PRC-barrel domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Flagellar hook protein flgE Flagellar hook protein flgE 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Class II aaRS and biotin synthetases Translation proteins 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Acetyl-CoA synthetase-like FMN-dependent nitroreductase-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Thioredoxin-like Thioredoxin-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
beta-Roll DNase I-like 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Bacterial muramidases Lysozyme-like 11
CoA-dependent acyltransferases Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Duplicated hybrid motif Phosphohistidine domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Beta-D-glucan exohydrolase, C-terminal domain Beta-D-glucan exohydrolase, C-terminal domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
(Phosphotyrosine protein) phosphatases II FAD/NAD(P)-binding domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Protein kinase-like (PK-like) Duplicated hybrid motif 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
MurE/MurF N-terminal domain MurE/MurF N-terminal domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11

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