SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Pseudomonas sp. TKP

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

813 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1221
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 7029
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4314
Homeodomain-like Homeodomain-like 3810
CheY-like C-terminal effector domain of the bipartite response regulators 333
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 303
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 274
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 263
GroES-like NAD(P)-binding Rossmann-fold domains 242
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 2311
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2320
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 232
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 223
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 206
Homodimeric domain of signal transducing histidine kinase CheY-like 1916
Thioredoxin-like GST C-terminal domain-like 192
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 195
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1812
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 186
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 185
P-loop containing nucleoside triphosphate hydrolases MOP-like 171
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 175
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 174
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 174
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 174
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 174
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 174
Actin-like ATPase domain Actin-like ATPase domain 164
Nucleotide cyclase EAL domain-like 1611
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 165
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1610
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 155
Thiolase-like Thiolase-like 152
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1410
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 143
HAD-like Calcium ATPase, transmembrane domain M 137
Calcium ATPase, transduction domain A HAD-like 137
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 137
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 131
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 136
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 136
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1312
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 126
"Winged helix" DNA-binding domain PLP-dependent transferases 121
Class I glutamine amidotransferase-like Homeodomain-like 112
RmlC-like cupins Homeodomain-like 102
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 102
"Winged helix" DNA-binding domain GAF domain-like 91
Homeodomain-like Ribonuclease H-like 92
CheY-like P-loop containing nucleoside triphosphate hydrolases 92
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 91
Cytochrome c Cytochrome c 95
PYP-like sensor domain (PAS domain) EAL domain-like 97
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 93
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 92
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 82
CheY-like Homeodomain-like 81
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 85
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 87
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
PreATP-grasp domain Rudiment single hybrid motif 73
PYP-like sensor domain (PAS domain) Homeodomain-like 76
Phospholipase D/nuclease Phospholipase D/nuclease 74
Folate-binding domain Aminomethyltransferase beta-barrel domain 73
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 73
cAMP-binding domain-like "Winged helix" DNA-binding domain 71
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 74
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 73
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 66
P-loop containing nucleoside triphosphate hydrolases Translation proteins 66
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 65
MetI-like MetI-like 62
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 65
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 64
PYP-like sensor domain (PAS domain) CheY-like 65
Regulatory protein AraC Homeodomain-like 62
CheY-like CheY-like 66
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
lambda repressor-like DNA-binding domains RmlC-like cupins 61
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 63
CheW-like CheY-like 64
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 62
Histidine-containing phosphotransfer domain, HPT domain CheY-like 65
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 63
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 61
"Winged helix" DNA-binding domain Chorismate lyase-like 61
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 61
ACT-like ACT-like 63
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 61
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 53
GAF domain-like Homodimeric domain of signal transducing histidine kinase 55
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 51
PapD-like Periplasmic chaperone C-domain 51
Alpha-L RNA-binding motif Pseudouridine synthase 52
(Trans)glycosidases Glycosyl hydrolase domain 55
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 51
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 54
GAF domain-like Homeodomain-like 54
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 54
PLP-binding barrel Alanine racemase C-terminal domain-like 52
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 52
Histidine-containing phosphotransfer domain, HPT domain CheW-like 53
Acetyl-CoA synthetase-like ACP-like 55
Lysozyme-like beta-lactamase/transpeptidase-like 53
GAF domain-like PYP-like sensor domain (PAS domain) 55
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 44
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 43
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 43
CoA-dependent acyltransferases CoA-dependent acyltransferases 44
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
ACP-like ACP-like 44
ACP-like CoA-dependent acyltransferases 44
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 43
Homeodomain-like SIS domain 41
lambda repressor-like DNA-binding domains LexA/Signal peptidase 41
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 43
Nucleic acid-binding proteins RuvA domain 2-like 44
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 42
HMA, heavy metal-associated domain HAD-like 43
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 41
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 43
Cupredoxins Cupredoxins 42
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 44
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 41
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 42
CheY-like Methylesterase CheB, C-terminal domain 41
CBS-domain pair FAD-binding/transporter-associated domain-like 41
ACT-like Formyltransferase 41
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 43
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
HlyD-like secretion proteins HlyD-like secretion proteins 42
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 44
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 42
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 42
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 43
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 43
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 43
CheY-like Nucleotide cyclase 44
Nucleotide-diphospho-sugar transferases RmlC-like cupins 41
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 31
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Glutathione synthetase ATP-binding domain-like Single hybrid motif 32
ISP domain Bet v1-like 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
P-loop containing nucleoside triphosphate hydrolases ACT-like 32
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 31
HPr-like Phosphoenolpyruvate/pyruvate domain 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 31
HD-domain/PDEase-like ACT-like 32
Translation proteins EF-G C-terminal domain-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Single hybrid motif CoA-dependent acyltransferases 32
Phage tail proteins Phage fibre proteins 31
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
HPr-like Phosphohistidine domain 32
Phage tail proteins Phage tail proteins 31
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 31
Nucleotidyltransferase ACT-like 32
Cyclophilin-like PH0987 N-terminal domain-like 32
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 31
Translation proteins ThrRS/AlaRS common domain 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Phage tail proteins gp5 N-terminal domain-like 31
TPR-like TPR-like 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
LeuD/IlvD-like Aconitase iron-sulfur domain 33
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 32
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
E set domains (Trans)glycosidases 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 33
Triger factor/SurA peptide-binding domain-like FKBP-like 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
PreATP-grasp domain Single hybrid motif 32
gp5 N-terminal domain-like Phage fibre proteins 31
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
Homodimeric domain of signal transducing histidine kinase CheW-like 31
TPR-like C-terminal effector domain of the bipartite response regulators 33
Rudiment single hybrid motif Single hybrid motif 32
HAMP domain-like CheY-like 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 31
Periplasmic binding protein-like II Periplasmic binding protein-like II 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Nucleotidyltransferase HD-domain/PDEase-like 32
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Pectin lyase-like Autotransporter 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
GroEL-intermediate domain like GroEL apical domain-like 22
P-loop containing nucleoside triphosphate hydrolases TPR-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
GroEL equatorial domain-like GroEL apical domain-like 22
TGS-like ACT-like 21
Periplasmic binding protein-like II CheY-like 21
HAMP domain-like PYP-like sensor domain (PAS domain) 21
PDZ domain-like PDZ domain-like 22
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
PK beta-barrel domain-like PK C-terminal domain-like 21
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
FAD/NAD(P)-binding domain Folate-binding domain 21
GAF domain-like CheY-like 22
"Winged helix" DNA-binding domain LexA/Signal peptidase 21
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 21
Trypsin-like serine proteases PDZ domain-like 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 21
GroEL equatorial domain-like GroEL-intermediate domain like 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Nucleotidyltransferase TGS-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Galactose mutarotase-like E set domains 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
RuvA domain 2-like RuvA domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
alpha-helical ferredoxin Nucleotide-binding domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Formyltransferase FMT C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
CheY-like EAL domain-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
MetI-like P-loop containing nucleoside triphosphate hydrolases 21
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 21
E set domains Glycosyl hydrolase domain 22
Ferritin-like Calcium ATPase, transmembrane domain M 21
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 21
HD-domain/PDEase-like TGS-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 21
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 21
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Adenine nucleotide alpha hydrolases-like GAF domain-like 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 21
ClpP/crotonase ClpP/crotonase 21
DsbC/DsbG N-terminal domain-like Thioredoxin-like 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Pili subunits GspK insert domain-like 22
Periplasmic binding protein-like II Lysozyme-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Duplicated hybrid motif HPr-like 21
Bacterial polysaccharide co-polymerase-like Bacterial polysaccharide co-polymerase-like 21
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
PUA domain-like Ribosomal protein S5 domain 2-like 22
PDZ domain-like ClpP/crotonase 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Ferritin-like Calcium ATPase, transduction domain A 21
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Flavoproteins Riboflavin synthase domain-like 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Duplicated hybrid motif Phosphohistidine domain 21
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Ribonuclease H-like DNA/RNA polymerases 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Ferritin-like HAD-like 21
Aldolase post-HMGL domain-like 22
YrdC/RibB RibA-like 21
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
CheY-like HD-domain/PDEase-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
RNI-like L domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
PurS-like FGAM synthase PurL, linker domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
MOP-like MOP-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleotidyltransferase PHP domain-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Pseudouridine synthase PUA domain-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
L domain-like L domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Cloacin translocation domain Ribonuclease domain of colicin E3 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
CBS-domain pair Nucleotide cyclase 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
DNA-glycosylase Nudix 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Aldolase Single hybrid motif 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Thermostable phytase (3-phytase) Thermostable phytase (3-phytase) 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
GAF domain-like EAL domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
HRDC-like HRDC-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Quinoprotein alcohol dehydrogenase-like Cytochrome c 11
Tex N-terminal region-like RuvA domain 2-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
ACT-like HAD-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like JAB1/MPN domain 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Cyclophilin-like Cyclophilin-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Glucose permease domain IIB Glucose permease domain IIB 11
"Winged helix" DNA-binding domain MOP-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Ferredoxin reductase-like, C-terminal NADP-linked domain Creatinase/aminopeptidase 11
FMN-binding split barrel "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ribokinase-like Nucleotidylyl transferase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Dihydropteroate synthetase-like Methionine synthase domain 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Nucleic acid-binding proteins BRCT domain 11
HCP-like HCP-like 11
Periplasmic binding protein-like II ACT-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
YbaK/ProRS associated domain HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Glycosyl hydrolase domain Starch-binding domain-like 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
JAB1/MPN domain Activating enzymes of the ubiquitin-like proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
HD-domain/PDEase-like "Winged helix" DNA-binding domain 11
EAL domain-like Sensory domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Putative DNA-binding domain Translation proteins 11
cAMP-binding domain-like CBS-domain pair 11
Formyltransferase NAD(P)-binding Rossmann-fold domains 11
post-HMGL domain-like Single hybrid motif 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Caspase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase C-terminal effector domain of the bipartite response regulators 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Zinc beta-ribbon Zinc beta-ribbon 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Cyclophilin-like Single hybrid motif 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
L30e-like alpha/beta knot 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
JAB1/MPN domain Cysteine proteinases 11
Rudiment single hybrid motif Cyclophilin-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Barwin-like endoglucanases Sporulation related repeat 11
GAF domain-like Phosphohistidine domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Single hybrid motif alpha/beta-Hydrolases 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Thioredoxin-like Thioredoxin-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Lysozyme-like PGBD-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
PHP domain-like AF1531-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Bacterial muramidases Lysozyme-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
PUA domain-like alpha/beta knot 11
(Trans)glycosidases Starch-binding domain-like 11
Phase 1 flagellin Phase 1 flagellin 11
GroEL-intermediate domain like GroEL-intermediate domain like 11
Phoshotransferase/anion transport protein HPr-like 11
2Fe-2S ferredoxin-like ADC-like 11
Carbamate kinase-like PUA domain-like 11
Thioredoxin-like TPR-like 11
2Fe-2S ferredoxin-like Creatinase/aminopeptidase 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Periplasmic binding protein-like II Nucleotide cyclase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleic acid-binding proteins GAD domain-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
PH0987 N-terminal domain-like Single hybrid motif 11
YajQ-like YajQ-like 11
Quinoprotein alcohol dehydrogenase-like MetI-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
RNase III domain-like dsRNA-binding domain-like 11
Chorismate mutase II ACT-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
Actin-like ATPase domain HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Acyl-CoA N-acyltransferases (Nat) Glutathione synthetase ATP-binding domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Lysozyme-like LysM domain 11
Translation proteins Translation proteins 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
(Phosphotyrosine protein) phosphatases II FAD/NAD(P)-binding domain 11
CheC-like Surface presentation of antigens (SPOA) 11
HAMP domain-like EAL domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
DPP6 N-terminal domain-like CheY-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
CarD-like TRCF domain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nqo5-like HydB/Nqo4-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like HRDC-like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Nucleotidyltransferase Nucleotidyltransferase 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Zn-dependent exopeptidases LysM domain 11
Cupredoxins Cytochrome c 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
GspK insert domain-like RuvA domain 2-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Periplasmic binding protein-like I Homeodomain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
RmlC-like cupins RmlC-like cupins 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
L domain-like Protein kinase-like (PK-like) 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
ACT-like PYP-like sensor domain (PAS domain) 11
HlyD-like secretion proteins Outer membrane efflux proteins (OEP) 11
GAF domain-like HlyD-like secretion proteins 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Nucleotidylyl transferase YegP-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Periplasmic binding protein-like II OmpA-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
FKBP-like FKBP-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
TGS-like ThrRS/AlaRS common domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
4Fe-4S ferredoxins ADC-like 11
ACP-like alpha/beta-Hydrolases 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
ACT-like Homeodomain-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
PIN domain-like DNA/RNA polymerases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
E set domains E set domains 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
GAF domain-like GAF domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
LysM domain LysM domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
NTF2-like Homeodomain-like 11
TGS-like Class II aaRS and biotin synthetases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
NTF2-like Sec-C motif 11
alpha/beta-Hydrolases beta-Roll 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
DNA clamp DNA clamp 11
PLP-dependent transferases PLP-dependent transferases 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
TerB-like Chaperone J-domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
EAL domain-like CBS-domain pair 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
GAF domain-like Nucleotide cyclase 11
PurS-like PurM C-terminal domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Macro domain-like Zn-dependent exopeptidases 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PLP-dependent transferases P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Sialidases 11
Molybdenum cofactor-binding domain Cytochrome c 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
vWA-like TPR-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
S-adenosyl-L-methionine-dependent methyltransferases FAD/NAD(P)-binding domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Periplasmic binding protein-like II EAL domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
FliG FliG 11
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Class II aaRS and biotin synthetases Translation proteins 11
TGS-like Class II aaRS ABD-related 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Ribonuclease H-like mu transposase, C-terminal domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
PTS system IIB component-like PTS system IIB component-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
HAMP domain-like Nucleotide cyclase 11
CBS-domain pair MgtE membrane domain-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Hsp33 domain HSP33 redox switch-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
ARM repeat TPR-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
PheT/TilS domain Putative DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Sporulation related repeat 11
TSP type-3 repeat OmpA-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
(Trans)glycosidases Anthrax protective antigen 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
PP2C-like Protein kinase-like (PK-like) 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
PreATP-grasp domain Cyclophilin-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
GspK insert domain-like GspK insert domain-like 11
PurS-like Class I glutamine amidotransferase-like 11
Single hybrid motif Single hybrid motif 11
Radical SAM enzymes RuvA domain 2-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
MgtE N-terminal domain-like CBS-domain pair 11
Carbamate kinase-like ACT-like 11
Nudix Thiamin phosphate synthase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
PHP14-like Phospholipase D/nuclease 11
FAD-linked oxidoreductase ALDH-like 11
GroES-like GroES-like 11
Zinc beta-ribbon DNA primase core 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
MFS general substrate transporter Proline/betaine transporter ProP, C-terminal cytoplasmic domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
FMT C-terminal domain-like NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase tRNA-binding arm 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Translation proteins PRC-barrel domain 11
PPK N-terminal domain-like PHP14-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PurS-like PurM N-terminal domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Protein kinase-like (PK-like) vWA-like 11
Nudix Nudix 11
OMPA-like OmpA-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PIN domain-like Ribonuclease H-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Pili subunits RuvA domain 2-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Tex N-terminal region-like Ribonuclease H-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ribosomal protein L6 Ribosomal protein L6 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
UROD/MetE-like UROD/MetE-like 11
Inosine monophosphate dehydrogenase (IMPDH) Nitrite and sulphite reductase 4Fe-4S domain-like 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
Globin-like Riboflavin synthase domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Ribbon-helix-helix ALDH-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Fic-like "Winged helix" DNA-binding domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Ribonuclease H-like RuvA domain 2-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Riboflavin synthase domain-like Creatinase/aminopeptidase 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]