SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Streptococcus sp. I-G2

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

428 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2412
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 71
CheY-like C-terminal effector domain of the bipartite response regulators 71
(Trans)glycosidases Glycosyl hydrolase domain 63
Calcium ATPase, transduction domain A HAD-like 64
Actin-like ATPase domain Actin-like ATPase domain 63
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 63
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Bacterial adhesins Bacterial adhesins 54
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 51
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 53
HAD-like Calcium ATPase, transmembrane domain M 53
E set domains (Trans)glycosidases 55
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 52
Translation proteins EF-G C-terminal domain-like 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
alpha/beta-Hydrolases Galactose-binding domain-like 42
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 42
Alpha-L RNA-binding motif Pseudouridine synthase 41
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 43
GroES-like NAD(P)-binding Rossmann-fold domains 41
PreATP-grasp domain Rudiment single hybrid motif 31
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 32
Bacterial adhesins Cna protein B-type domain 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 31
Lysozyme-like beta-lactamase/transpeptidase-like 33
Nucleic acid-binding proteins RuvA domain 2-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 31
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
Homeodomain-like Homeodomain-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 32
Cna protein B-type domain Cna protein B-type domain 33
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
Periplasmic binding protein-like II MetI-like 33
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 32
(Trans)glycosidases Galactose-binding domain-like 33
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
L30e-like alpha/beta knot 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 22
Thiolase-like Thiolase-like 21
P-loop containing nucleoside triphosphate hydrolases TPR-like 22
Triger factor/SurA peptide-binding domain-like FKBP-like 22
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
PLP-binding barrel Alanine racemase C-terminal domain-like 22
MalF N-terminal region-like MetI-like 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 22
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
"Winged helix" DNA-binding domain Chorismate lyase-like 21
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 22
ACT-like ACT-like 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Regulatory protein AraC Homeodomain-like 22
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
CheY-like Homeodomain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
Starch-binding domain-like E set domains 22
Glucose permease domain IIB Duplicated hybrid motif 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
PurM N-terminal domain-like PurM C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
Nucleic acid-binding proteins Ribonuclease H-like 22
Phoshotransferase/anion transport protein PTS system IIB component-like 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Peptide methionine sulfoxide reductase Mss4-like 21
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
Starch-binding domain-like (Trans)glycosidases 22
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 21
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
MFS general substrate transporter MFS general substrate transporter 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Carbamate kinase-like ACT-like 11
HprK N-terminal domain-like CBS-domain pair 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
HD-domain/PDEase-like TGS-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PIN domain-like Ribonuclease H-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidyltransferase TGS-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Adhesin YadA, collagen-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
lambda repressor-like DNA-binding domains TPR-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
"Helical backbone" metal receptor Lipocalins 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Ribosomal protein L6 Ribosomal protein L6 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
E set domains Glycosyl hydrolase domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Tex N-terminal region-like Ribonuclease H-like 11
DNA clamp DNA clamp 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Peptidoglycan deacetylase N-terminal noncatalytic region Glycoside hydrolase/deacetylase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Trigger factor ribosome-binding domain FKBP-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Nucleic acid-binding proteins BRCT domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
RNase III domain-like dsRNA-binding domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
TGS-like ThrRS/AlaRS common domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 11
Translation proteins PRC-barrel domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
DNA methylase specificity domain DNA methylase specificity domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Galactose-binding domain-like CalX-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
(Trans)glycosidases (Trans)glycosidases 11
Ribonuclease H-like DNA/RNA polymerases 11
"Winged helix" DNA-binding domain TPR-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
(Trans)glycosidases CalX-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Formiminotransferase domain of formiminotransferase-cyclodeaminase. Formiminotransferase domain of formiminotransferase-cyclodeaminase. 11
PIN domain-like DNA/RNA polymerases 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain Galactose-binding domain-like 11
Hsp33 domain HSP33 redox switch-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
LysM domain Lysozyme-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
PhtA domain-like PhtA domain-like 11
Homeodomain-like SIS domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
RuvA domain 2-like BRCT domain 11
"Winged helix" DNA-binding domain CBS-domain pair 11
CarD-like TRCF domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Subtilisin-like Bacterial immunoglobulin/albumin-binding domains 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
TGS-like ACT-like 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
PTS system fructose IIA component-like PTS IIb component 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
HAD-like Cyclophilin-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
"Winged helix" DNA-binding domain PTS system IIB component-like 11
PRTase-like PRTase-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
TGS-like Class II aaRS ABD-related 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Single hybrid motif FAD/NAD(P)-binding domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
DeoB insert domain-like Alkaline phosphatase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Trypsin-like serine proteases PDZ domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Alpha-L RNA-binding motif P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
DNA-glycosylase Nudix 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
HMA, heavy metal-associated domain HAD-like 11
"Winged helix" DNA-binding domain PRTase-like 11
"Winged helix" DNA-binding domain DnaD domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
CBS-domain pair ACT-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
TGS-like Class II aaRS and biotin synthetases 11
Thioredoxin-like GST C-terminal domain-like 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase tRNA-binding arm 11
Translation proteins ThrRS/AlaRS common domain 11
ALDH-like Dehydroquinate synthase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PTS-regulatory domain, PRD PTS system IIB component-like 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
SacY-like RNA-binding domain PTS-regulatory domain, PRD 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
DNA repair protein MutS, domain III SMR domain-like 11
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Translation proteins Translation proteins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Class II aaRS and biotin synthetases SufE/NifU 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Periplasmic binding protein-like II ACT-like 11
Glutamine synthetase/guanido kinase Glutathione synthetase ATP-binding domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Nucleotidylyl transferase Riboflavin kinase-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 11
Nucleotidyltransferase ACT-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
PA domain Subtilisin-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
UROD/MetE-like UROD/MetE-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like RuvA domain 2-like 11
PUA domain-like alpha/beta knot 11
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 11
Clc chloride channel TrkA C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain alpha/beta-Hydrolases 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Nucleic acid-binding proteins GAD domain-like 11
"Winged helix" DNA-binding domain GAF domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Zinc beta-ribbon DNA primase core 11
GroEL equatorial domain-like GroEL apical domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 11
PA domain Bacterial immunoglobulin/albumin-binding domains 11
PheT/TilS domain Putative DNA-binding domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Ribonuclease H-like RuvA domain 2-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Starch-binding domain-like Starch-binding domain-like 11
Clavaminate synthase-like S-adenosyl-L-methionine-dependent methyltransferases 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
HD-domain/PDEase-like ACT-like 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Serine metabolism enzymes domain ACT-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Tetrahydrobiopterin biosynthesis enzymes-like 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 11
PTS system IIB component-like PTS system IIB component-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11

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