SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Sinorhizobium meliloti AK83

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

735 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 942
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 6714
P-loop containing nucleoside triphosphate hydrolases MOP-like 472
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 393
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 355
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3017
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 281
Homeodomain-like Homeodomain-like 275
GroES-like NAD(P)-binding Rossmann-fold domains 273
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 255
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 256
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 252
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 236
Actin-like ATPase domain Actin-like ATPase domain 217
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 191
CheY-like C-terminal effector domain of the bipartite response regulators 193
Thioredoxin-like GST C-terminal domain-like 191
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 161
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 162
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 163
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 154
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 146
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 144
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1311
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1210
EAL domain-like Nucleotide cyclase 127
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 123
beta-Roll beta-Roll 117
MetI-like MetI-like 113
Nucleotide cyclase TPR-like 115
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 113
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 116
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 113
Thiolase-like Thiolase-like 101
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 101
Folate-binding domain Aminomethyltransferase beta-barrel domain 104
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 103
P-loop containing nucleoside triphosphate hydrolases Translation proteins 108
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 94
"Winged helix" DNA-binding domain GAF domain-like 91
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 92
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 94
"Winged helix" DNA-binding domain PLP-dependent transferases 91
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 99
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 93
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 94
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 94
Enolase N-terminal domain-like Enolase C-terminal domain-like 92
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 94
"Winged helix" DNA-binding domain Chorismate lyase-like 81
Class I glutamine amidotransferase-like Homeodomain-like 81
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 82
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 84
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 84
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 82
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 82
(Trans)glycosidases Glycosyl hydrolase domain 85
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 74
GroEL equatorial domain-like GroEL apical domain-like 71
FAD/NAD(P)-binding domain Folate-binding domain 72
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 72
PreATP-grasp domain Rudiment single hybrid motif 74
Homeodomain-like SIS domain 71
GroEL equatorial domain-like GroEL-intermediate domain like 71
PLP-binding barrel Alanine racemase C-terminal domain-like 72
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 71
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 76
GroEL-intermediate domain like GroEL apical domain-like 71
Homodimeric domain of signal transducing histidine kinase CheY-like 76
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 71
CheY-like P-loop containing nucleoside triphosphate hydrolases 73
PYP-like sensor domain (PAS domain) CheY-like 76
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 64
PYP-like sensor domain (PAS domain) Nucleotide cyclase 64
cAMP-binding domain-like "Winged helix" DNA-binding domain 61
Lysozyme-like beta-lactamase/transpeptidase-like 63
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 63
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 63
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 65
Cytochrome c Cytochrome c 63
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 63
"Winged helix" DNA-binding domain Actin-like ATPase domain 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 62
PYP-like sensor domain (PAS domain) EAL domain-like 64
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 64
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 62
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 62
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
ACT-like ACT-like 53
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 51
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
HlyD-like secretion proteins HlyD-like secretion proteins 53
Homeodomain-like Ribonuclease H-like 52
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 55
HAD-like Calcium ATPase, transmembrane domain M 54
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 53
PGBD-like L,D-transpeptidase catalytic domain-like 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
Calcium ATPase, transduction domain A HAD-like 54
FAD-linked reductases, C-terminal domain Folate-binding domain 51
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 51
CheY-like Homeodomain-like 51
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 52
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 51
Triger factor/SurA peptide-binding domain-like FKBP-like 43
Alpha-L RNA-binding motif Pseudouridine synthase 42
Single hybrid motif CoA-dependent acyltransferases 41
Phospholipase D/nuclease Phospholipase D/nuclease 44
E set domains (Trans)glycosidases 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
lambda repressor-like DNA-binding domains LexA/Signal peptidase 41
TPR-like TPR-like 43
ParB/Sulfiredoxin KorB DNA-binding domain-like 41
lambda repressor-like DNA-binding domains RmlC-like cupins 43
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
PreATP-grasp domain Single hybrid motif 43
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 44
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Rudiment single hybrid motif Single hybrid motif 43
Glutathione synthetase ATP-binding domain-like Single hybrid motif 43
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 43
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 43
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 42
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 41
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 44
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 41
C-terminal effector domain of the bipartite response regulators TPR-like 43
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 42
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
Thioredoxin-like TPR-like 31
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 33
Lysozyme-like PGBD-like 31
L30e-like alpha/beta knot 31
P-loop containing nucleoside triphosphate hydrolases TPR-like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
E set domains Glycosyl hydrolase domain 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
TolB, N-terminal domain TPR-like 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
PDZ domain-like PDZ domain-like 32
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Oxidoreductase molybdopterin-binding domain E set domains 32
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 32
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
Translation proteins EF-G C-terminal domain-like 33
Protein kinase-like (PK-like) PLP-dependent transferases 32
Nqo1 middle domain-like Nqo1C-terminal domain-like 32
PYP-like sensor domain (PAS domain) GAF domain-like 33
CheY-like Nucleotide cyclase 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
CheY-like CheY-like 33
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 32
Cupredoxins Cupredoxins 33
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 33
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 32
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 33
GroES-like GroES-like 31
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Trypsin-like serine proteases PDZ domain-like 32
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 32
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
ISP domain Bet v1-like 31
Regulatory protein AraC Homeodomain-like 31
HMA, heavy metal-associated domain HAD-like 33
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 32
RuvA domain 2-like Nucleic acid-binding proteins 33
PDZ domain-like ClpP/crotonase 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
SAM/Pointed domain P-loop containing nucleoside triphosphate hydrolases 21
SAM/Pointed domain TPR-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 21
MalF N-terminal region-like MetI-like 21
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Translation proteins ThrRS/AlaRS common domain 22
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Aldolase post-HMGL domain-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 22
ACT-like Formyltransferase 21
SAM/Pointed domain Nucleotide cyclase 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 21
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
HAD-like Acyl-CoA N-acyltransferases (Nat) 21
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
Galactose-binding domain-like (Trans)glycosidases 22
2Fe-2S ferredoxin-like ADC-like 21
FAD/NAD(P)-binding domain ISP domain 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Macro domain-like Zn-dependent exopeptidases 21
GAF domain-like Homeodomain-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Protein kinase-like (PK-like) Duplicated hybrid motif 21
RmlC-like cupins Homeodomain-like 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleotide cyclase TolB, N-terminal domain 21
Resolvase-like Homeodomain-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Duplicated hybrid motif PLP-dependent transferases 21
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
GAF domain-like Nucleotide cyclase 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 22
Formyltransferase FMT C-terminal domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Nucleotidyltransferase ACT-like 22
Metalloproteases ("zincins"), catalytic domain beta-Roll 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Siroheme synthase middle domains-like Tetrapyrrole methylase 21
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 21
4Fe-4S ferredoxins ADC-like 21
DNA clamp DNA clamp 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
CheY-like Methylesterase CheB, C-terminal domain 21
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 22
beta-lactamase/transpeptidase-like Sporulation related repeat 22
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
beta-Roll Concanavalin A-like lectins/glucanases 21
ClpP/crotonase ClpP/crotonase 21
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
alpha-helical ferredoxin Nucleotide-binding domain 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Pectin lyase-like Autotransporter 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PGBD-like PGBD-like 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
TGS-like Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
RNase III domain-like dsRNA-binding domain-like 11
dUTPase-like dUTPase-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Ribonuclease H-like RuvA domain 2-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Trigger factor ribosome-binding domain FKBP-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
Bacterial muramidases Lysozyme-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
YlxR-like L30e-like 11
PUA domain-like alpha/beta knot 11
FliG FliG 11
LysM domain Duplicated hybrid motif 11
YebC-like PFL-like glycyl radical enzymes 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
PK beta-barrel domain-like PK C-terminal domain-like 11
ClpP/crotonase NfeD domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Rudiment single hybrid motif Aldolase 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
C-terminal effector domain of the bipartite response regulators TolB, N-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
HlyD-like secretion proteins Outer membrane efflux proteins (OEP) 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
NAD(P)-binding Rossmann-fold domains Sec-C motif 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
FabD/lysophospholipase-like GroES-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Putative DNA-binding domain lambda repressor-like DNA-binding domains 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Ribosomal protein L6 Ribosomal protein L6 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
MFS general substrate transporter MFS general substrate transporter 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases GAD domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
NagB/RpiA/CoA transferase-like DAK1/DegV-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Putative DNA-binding domain RmlC-like cupins 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Rhodanese/Cell cycle control phosphatase Multiheme cytochromes 11
Acyl-CoA N-acyltransferases (Nat) Glutathione synthetase ATP-binding domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
ISP domain 2Fe-2S ferredoxin-like 11
Sensory domain-like Nucleotide cyclase 11
Homodimeric domain of signal transducing histidine kinase Nucleotide cyclase 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Tex N-terminal region-like RuvA domain 2-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Fic-like "Winged helix" DNA-binding domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
ALDH-like ALDH-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Thioredoxin-like Thioredoxin-like 11
TPR-like Porins 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Thiolase-like FabD/lysophospholipase-like 11
vWA-like Class I glutamine amidotransferase-like 11
PHP14-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Galactose mutarotase-like Six-hairpin glycosidases 11
PIN domain-like Ribonuclease H-like 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Poly A polymerase C-terminal region-like ACT-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-linked oxidoreductase 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Galactose mutarotase-like Galactose mutarotase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
DNA-glycosylase Nudix 11
RuvA domain 2-like RuvA domain 2-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
CBS-domain pair MgtE membrane domain-like 11
Translation proteins Translation proteins 11
Rudiment single hybrid motif post-HMGL domain-like 11
CheW-like CheY-like 11
Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Nudix "Winged helix" DNA-binding domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
YrdC/RibB RibA-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Cadherin-like Cadherin-like 11
GAF domain-like Phosphohistidine domain 11
RmlC-like cupins RmlC-like cupins 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Pectin lyase-like Pectin lyase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
Nucleotidylyl transferase tRNA-binding arm 11
FabD/lysophospholipase-like ACP-like 11
RuvA domain 2-like JAB1/MPN domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
ISP domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
DAK1/DegV-like DhaL-like 11
HRDC-like HRDC-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Thioredoxin-like Nqo1 middle domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
FMN-binding split barrel UbiD C-terminal domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
EAL domain-like CBS-domain pair 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Cyclophilin-like Cyclophilin-like 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Homeodomain-like NagB/RpiA/CoA transferase-like 11
Serine metabolism enzymes domain ACT-like 11
PIN domain-like DNA/RNA polymerases 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase alpha/beta-Hydrolases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like DNA/RNA polymerases 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
PLP-dependent transferases PLP-dependent transferases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Hairpin loop containing domain-like TPR-like 11
AhpD-like AhpD-like 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
PPK N-terminal domain-like PHP14-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
Nucleotidyltransferase TGS-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
SH3-domain Cysteine proteinases 11
TGS-like ThrRS/AlaRS common domain 11
NTF2-like FAD/NAD(P)-binding domain 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Nucleotide-diphospho-sugar transferases PLP-dependent transferases 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
(Trans)glycosidases (Trans)glycosidases 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
CarD-like TRCF domain-like 11
NAD(P)-binding Rossmann-fold domains Thioesterase/thiol ester dehydrase-isomerase 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Aldolase Single hybrid motif 11
Zinc beta-ribbon DNA primase core 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Galactose-binding domain-like Galactose-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
GroES-like ACP-like 11
TGS-like Class II aaRS ABD-related 11
ADC synthase Class I glutamine amidotransferase-like 11
post-HMGL domain-like Single hybrid motif 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
CBS-domain pair Nucleotide cyclase 11
MFS general substrate transporter Sm-like ribonucleoproteins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Staphylococcal nuclease Staphylococcal nuclease 11
Adhesin YadA, collagen-binding domain Pili subunits 11
Globin-like Riboflavin synthase domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
Thiolase-like ACP-like 11
Nucleic acid-binding proteins BRCT domain 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
ISP domain Riboflavin synthase domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
His-Me finger endonucleases S-adenosyl-L-methionine-dependent methyltransferases 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Acetyl-CoA synthetase-like ACP-like 11
HCP-like PGBD-like 11
Pseudouridine synthase PUA domain-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Translation proteins PRC-barrel domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Cupredoxins Carboxypeptidase regulatory domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PreATP-grasp domain post-HMGL domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
HD-domain/PDEase-like ACT-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
E set domains E set domains 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors DAK1/DegV-like 11
HD-domain/PDEase-like TGS-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
PreATP-grasp domain PreATP-grasp domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Class I glutamine amidotransferase-like Glycosyl hydrolase domain 11
Cna protein B-type domain Hypothetical protein PA1324 11
Carbamate kinase-like PUA domain-like 11
Ribonuclease H-like HRDC-like 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Cadherin-like beta-Roll 11
Glycoside hydrolase/deacetylase UraD-Like 11
HAMP domain-like CheY-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
TGS-like ACT-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Tex N-terminal region-like Ribonuclease H-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
FAD-linked oxidoreductase ALDH-like 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
PreATP-grasp domain Aldolase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
S-adenosyl-L-methionine-dependent methyltransferases EreA/ChaN-like 11
LysM domain LysM domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
RuvA domain 2-like BRCT domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Resolvase-like TrpR-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Hsp33 domain HSP33 redox switch-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain NAD(P)-linked oxidoreductase 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
GAF domain-like EAL domain-like 11
Single hybrid motif TK C-terminal domain-like 11
TerB-like Chaperone J-domain 11
PHP domain-like AF1531-like 11
NTF2-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
AGR C 984p-like AGR C 984p-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
Carbamate kinase-like ACT-like 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Sensory domain-like HAMP domain-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
CheY-like EAL domain-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Apolipoprotein A-I Apolipoprotein A-I 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
YjeF N-terminal domain-like Ribokinase-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
P-loop containing nucleoside triphosphate hydrolases PRTase-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins GAD domain-like 11
Thiolase-like GroES-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
TPR-like "Winged helix" DNA-binding domain 11
Periplasmic binding protein-like II ACT-like 11
Cupredoxins Cytochrome c 11

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