SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Methylomonas methanica MC09

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

784 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4830
PYP-like sensor domain (PAS domain) Nucleotide cyclase 3528
Nucleotide cyclase EAL domain-like 3527
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3214
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 3228
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 274
PYP-like sensor domain (PAS domain) EAL domain-like 2621
Homeodomain-like Ribonuclease H-like 222
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2019
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 196
Homodimeric domain of signal transducing histidine kinase CheY-like 1817
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1817
CheY-like Nucleotide cyclase 1811
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1716
PYP-like sensor domain (PAS domain) CheY-like 1715
CheY-like C-terminal effector domain of the bipartite response regulators 163
PYP-like sensor domain (PAS domain) GAF domain-like 1616
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 154
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 154
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 154
CheY-like CheY-like 1514
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 154
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 143
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 146
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 144
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 1311
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 1311
CheY-like EAL domain-like 139
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 135
Actin-like ATPase domain Actin-like ATPase domain 125
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 111
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 113
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 111
GAF domain-like Nucleotide cyclase 1110
CheY-like Histidine-containing phosphotransfer domain, HPT domain 1111
Cytochrome c Cytochrome c 106
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 106
CheY-like P-loop containing nucleoside triphosphate hydrolases 104
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 106
TPR-like TPR-like 97
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
CheY-like Homeodomain-like 82
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 84
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 81
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
CheY-like HD-domain/PDEase-like 84
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 77
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 73
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 75
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 75
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 75
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 72
cAMP-binding domain-like "Winged helix" DNA-binding domain 71
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 61
GAF domain-like EAL domain-like 66
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 65
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 61
HAMP domain-like PYP-like sensor domain (PAS domain) 66
PLP-binding barrel Alanine racemase C-terminal domain-like 63
GAF domain-like CheY-like 66
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
PurM N-terminal domain-like PurM C-terminal domain-like 52
Thioredoxin-like GST C-terminal domain-like 51
Triger factor/SurA peptide-binding domain-like FKBP-like 54
(Trans)glycosidases Glycosyl hydrolase domain 54
E set domains (Trans)glycosidases 54
Thiolase-like Thiolase-like 51
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 53
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 43
Calcium ATPase, transduction domain A HAD-like 44
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 44
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 44
GAF domain-like HD-domain/PDEase-like 44
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Calcium ATPase, transmembrane domain M HAD-like 44
DNA methylase specificity domain DNA methylase specificity domain 43
ACT-like ACT-like 43
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 43
E set domains Glycosyl hydrolase domain 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
GAF domain-like Homodimeric domain of signal transducing histidine kinase 44
Cupredoxins Cupredoxins 44
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 42
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
HAMP domain-like CheY-like 44
Acetyl-CoA synthetase-like ACP-like 44
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 43
CoA-dependent acyltransferases CoA-dependent acyltransferases 44
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
CoA-dependent acyltransferases ACP-like 44
PreATP-grasp domain Rudiment single hybrid motif 41
GroES-like NAD(P)-binding Rossmann-fold domains 41
Translation proteins EF-G C-terminal domain-like 43
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 31
HD-domain/PDEase-like HD-domain/PDEase-like 33
SMAD/FHA domain SMAD/FHA domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Nucleic acid-binding proteins RuvA domain 2-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Sensory domain-like Sensory domain-like 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Terpenoid cyclases/Protein prenyltransferases Cadherin-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
HAMP domain-like Nucleotide cyclase 33
Lysozyme-like beta-lactamase/transpeptidase-like 33
TPR-like P-loop containing nucleoside triphosphate hydrolases 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 31
Translation proteins SH3-like domain Nucleic acid-binding proteins 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
P-loop containing nucleoside triphosphate hydrolases MOP-like 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
Nucleotidyltransferase Poly A polymerase C-terminal region-like 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
ACP-like ACP-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PDZ domain-like PDZ domain-like 32
Histidine-containing phosphotransfer domain, HPT domain CheW-like 31
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 33
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 33
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 32
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Nucleotidyltransferase ACT-like 32
Homodimeric domain of signal transducing histidine kinase CheW-like 31
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 33
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 31
TrkA C-terminal domain-like TrkA C-terminal domain-like 21
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 22
CBS-domain pair MgtE membrane domain-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Trypsin-like serine proteases TPR-like 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
HD-domain/PDEase-like TGS-like 21
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
GroEL-intermediate domain like GroEL apical domain-like 21
PYP-like sensor domain (PAS domain) Homeodomain-like 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 21
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
"Winged helix" DNA-binding domain PLP-dependent transferases 21
Aldolase post-HMGL domain-like 22
TGS-like ACT-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
HMA, heavy metal-associated domain HAD-like 22
Single hybrid motif CoA-dependent acyltransferases 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 21
Thioredoxin-like Nqo1C-terminal domain-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
Trypsin-like serine proteases PDZ domain-like 21
Sensory domain-like PYP-like sensor domain (PAS domain) 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Thioredoxin-like Nqo1 middle domain-like 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase EAL domain-like 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
CheY-like PP2C-like 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
HCP-like HCP-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
CheY-like Methylesterase CheB, C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases WD40 repeat-like 22
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 22
Sensory domain-like CheY-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
HAMP domain-like EAL domain-like 22
Homodimeric domain of signal transducing histidine kinase Nucleotide cyclase 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 21
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
MOP-like MOP-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Nucleotide cyclase 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
cAMP-binding domain-like HD-domain/PDEase-like 21
Thioredoxin-like Nqo1 FMN-binding domain-like 21
Homodimeric domain of signal transducing histidine kinase EAL domain-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases ARM repeat 22
PYP-like sensor domain (PAS domain) PP2C-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 22
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
HD-domain/PDEase-like ACT-like 21
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
Protein kinase-like (PK-like) GAF domain-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Terpenoid cyclases/Protein prenyltransferases L domain-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Histidine-containing phosphotransfer domain, HPT domain EAL domain-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
HD-domain/PDEase-like Nucleotidyltransferase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 22
PP2C-like Protein kinase-like (PK-like) 21
GroEL equatorial domain-like GroEL apical domain-like 21
"Winged helix" DNA-binding domain LexA/Signal peptidase 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 21
C-terminal effector domain of the bipartite response regulators PYP-like sensor domain (PAS domain) 22
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 22
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
MgtE N-terminal domain-like CBS-domain pair 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
Periplasmic binding protein-like II Nucleotide cyclase 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 21
Aldolase AFP III-like domain 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
PYP-like sensor domain (PAS domain) Hemerythrin-like 22
Nucleotidyltransferase TGS-like 21
MesJ substrate recognition domain-like PheT/TilS domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
CarD-like TRCF domain-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
FMN-binding split barrel Riboflavin synthase domain-like 11
TPR-like HCP-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Ribokinase-like Nucleotidylyl transferase 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PP2C-like EAL domain-like 11
Restriction endonuclease-like "Winged helix" DNA-binding domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Multiheme cytochromes TSP type-3 repeat 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Serine metabolism enzymes domain ACT-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Bacterial muramidases Lysozyme-like 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
TPR-like Homodimeric domain of signal transducing histidine kinase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Periplasmic binding protein-like I Acylphosphatase/BLUF domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
TPR-like GAF domain-like 11
Nucleotide cyclase Hemerythrin-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Translation proteins 11
gp5 N-terminal domain-like Phage fibre proteins 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
ITPase-like P-loop containing nucleoside triphosphate hydrolases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Thioredoxin-like BolA-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Periplasmic binding protein-like II ACT-like 11
PilZ domain-like Nucleotide cyclase 11
Zn-dependent exopeptidases LysM domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
YrdC/RibB RibA-like 11
Macro domain-like Zn-dependent exopeptidases 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Periplasmic binding protein-like I PYP-like sensor domain (PAS domain) 11
"Winged helix" DNA-binding domain GAF domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Cupredoxins Starch-binding domain-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
DNase I-like Type I dockerin domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotide cyclase Acylphosphatase/BLUF domain-like 11
LysM domain LysM domain 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
WD40 repeat-like MetI-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
(2r)-phospho-3-sulfolactate synthase ComA ComB-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
NAD(P)-binding Rossmann-fold domains FAD/NAD(P)-binding domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
PKD domain Type I dockerin domain 11
Translation proteins ThrRS/AlaRS common domain 11
Phage tail proteins gp5 N-terminal domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
"Winged helix" DNA-binding domain MOP-like 11
Pseudouridine synthase PUA domain-like 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
MetI-like MetI-like 11
L domain-like L domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Periplasmic binding protein-like II CheY-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
PP2C-like Nucleotide cyclase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
HAMP domain-like GAF domain-like 11
Hemerythrin-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
FMN-binding split barrel UbiD C-terminal domain-like 11
PurS-like FGAM synthase PurL, linker domain 11
YrdC/RibB Actin-like ATPase domain 11
alpha-helical ferredoxin SCP-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Radical SAM enzymes Radical SAM enzymes 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nudix Thiamin phosphate synthase 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Carbamate kinase-like PUA domain-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
HRDC-like HRDC-like 11
Translation proteins Translation proteins 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
P-loop containing nucleoside triphosphate hydrolases PDZ domain-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Thioredoxin-like Cytochrome c 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Nucleic acid-binding proteins GAD domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Porins OMPA-like 11
Aldolase Single hybrid motif 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Fic-like "Winged helix" DNA-binding domain 11
2Fe-2S ferredoxin-like ADC-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
Galactose-binding domain-like Multiheme cytochromes 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
TPR-like Autotransporter 11
Sec-C motif Sec-C motif 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
PK beta-barrel domain-like PK C-terminal domain-like 11
post-HMGL domain-like Single hybrid motif 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleotide-binding domain Riboflavin synthase domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PUA domain-like alpha/beta knot 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
PIN domain-like DNA/RNA polymerases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Ammonium transporter EAL domain-like 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Resolvase-like Homeodomain-like 11
DNA clamp DNA clamp 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) 11
CheC-like Surface presentation of antigens (SPOA) 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
Chorismate mutase II ACT-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Ribbon-helix-helix ACT-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Multidrug efflux transporter AcrB transmembrane domain cAMP-binding domain-like 11
MoaD/ThiS ThiG-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
TGS-like ThrRS/AlaRS common domain 11
"Winged helix" DNA-binding domain SCP-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nqo5-like HydB/Nqo4-like 11
Translation proteins PRC-barrel domain 11
MgtE N-terminal domain-like CorA soluble domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
FAD-linked oxidoreductase ALDH-like 11
"Winged helix" DNA-binding domain TPR-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
MgtE N-terminal domain-like Magnesium transport protein CorA, transmembrane region 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
EAL domain-like Acylphosphatase/BLUF domain-like 11
PKD domain PKD domain 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
lambda repressor-like DNA-binding domains ARM repeat 11
L,D-transpeptidase catalytic domain-like Sporulation related repeat 11
P-loop containing nucleoside triphosphate hydrolases Quinoprotein alcohol dehydrogenase-like 11
Quinoprotein alcohol dehydrogenase-like WD40 repeat-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Pili subunits Pili subunits 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Trigger factor ribosome-binding domain FKBP-like 11
PPK N-terminal domain-like PHP14-like 11
L domain-like P-loop containing nucleoside triphosphate hydrolases 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Glycoside hydrolase/deacetylase (Trans)glycosidases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
MFS general substrate transporter MFS general substrate transporter 11
Acyl-CoA N-acyltransferases (Nat) cAMP-binding domain-like 11
Nudix "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
TSP type-3 repeat beta-lactamase/transpeptidase-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Sensory domain-like Periplasmic binding protein-like II 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Protein kinase-like (PK-like) PYP-like sensor domain (PAS domain) 11
vWA-like TPR-like 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
UROD/MetE-like UROD/MetE-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
EAL domain-like HD-domain/PDEase-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Sensory domain-like GAF domain-like 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
CBS-domain pair Nucleotide cyclase 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Homeodomain-like Homeodomain-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
SMAD/FHA domain Multidrug efflux transporter AcrB transmembrane domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
E set domains E set domains 11
HCP-like Autotransporter 11
Periplasmic binding protein-like II HD-domain/PDEase-like 11
EAL domain-like Sensory domain-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Pili subunits GspK insert domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
PHP14-like Phospholipase D/nuclease 11
Zinc beta-ribbon Zinc beta-ribbon 11
Phage tail proteins Phage tail proteins 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Sec-C motif NTF2-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
(Trans)glycosidases Anthrax protective antigen 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
GAF domain-like Homeodomain-like 11
TGS-like Class II aaRS ABD-related 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Metalloproteases ("zincins"), catalytic domain Metalloproteases ("zincins"), catalytic domain 11
Ribokinase-like N-(deoxy)ribosyltransferase-like 11
CheY-like TPR-like 11
FKBP-like FKBP-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Protein kinase-like (PK-like) C-type lectin-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
Putative DNA-binding domain Translation proteins 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
YajQ-like YajQ-like 11
EspE N-terminal domain-like EspE N-terminal domain-like 11
cAMP-binding domain-like Rhodanese/Cell cycle control phosphatase 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
E set domains Multiheme cytochromes 11
Protein kinase-like (PK-like) CheY-like 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Restriction endonuclease-like Zinc beta-ribbon 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Toll/Interleukin receptor TIR domain Collagen-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Phage tail proteins Phage fibre proteins 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Hemerythrin-like Homodimeric domain of signal transducing histidine kinase 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
RuvA domain 2-like BRCT domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Nucleotidyltransferase Nucleotidyltransferase 11
GAF domain-like Hemerythrin-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Zinc beta-ribbon DNA primase core 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
PurS-like Class I glutamine amidotransferase-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
PDZ domain-like ClpP/crotonase 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Tex N-terminal region-like RuvA domain 2-like 11
4Fe-4S ferredoxins ADC-like 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
PIN domain-like Ribonuclease H-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
Periplasmic binding protein-like II EAL domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
C-terminal effector domain of the bipartite response regulators Nucleotide cyclase 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
vWA-like SMAD/FHA domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
HCP-like Lysozyme-like 11
PurS-like PurM C-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
SMAD/FHA domain cAMP-binding domain-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
FliG FliG 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
TGS-like Class II aaRS and biotin synthetases 11
CheW-like CheY-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Multiheme cytochromes Multiheme cytochromes 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Ribulose-phoshate binding barrel 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Protein kinase-like (PK-like) TPR-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
DNA-glycosylase Nudix 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Cytochrome c Periplasmic binding protein-like I 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
C-terminal effector domain of the bipartite response regulators EAL domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
HCP-like Caspase-like 11
vWA-like OmpA-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
HD-domain/PDEase-like "Winged helix" DNA-binding domain 11
YegP-like YegP-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Toll/Interleukin receptor TIR domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
Lysozyme-like LysM domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotide-binding domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PYP-like sensor domain (PAS domain) Acylphosphatase/BLUF domain-like 11
PLP-dependent transferases PLP-dependent transferases 11
Sensory domain-like HD-domain/PDEase-like 11
RNase III domain-like dsRNA-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Periplasmic binding protein-like I Nucleotide cyclase 11
Glutathione synthetase ATP-binding domain-like Methenyltetrahydromethanopterin cyclohydrolase 11
Poly A polymerase C-terminal region-like ACT-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
SMAD/FHA domain Lysozyme-like 11
cAMP-binding domain-like cAMP-binding domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ammonium transporter PYP-like sensor domain (PAS domain) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Tex N-terminal region-like Ribonuclease H-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Ammonium transporter Nucleotide cyclase 11
GIY-YIG endonuclease RuvA domain 2-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Ribonuclease H-like GIY-YIG endonuclease 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
PilZ domain-like EAL domain-like 11
L30e-like alpha/beta knot 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Carbamate kinase-like ACT-like 11
Ribonuclease H-like HRDC-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
TPR-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Subtilisin-like Galactose-binding domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like RuvA domain 2-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
YefM-like lambda repressor-like DNA-binding domains 11
Periplasmic binding protein-like I EAL domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
SMAD/FHA domain Nucleotide cyclase 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
CBS-domain pair EAL domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
L domain-like Toll/Interleukin receptor TIR domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
CheY-like EspE N-terminal domain-like 11
Class I glutamine amidotransferase-like Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Flavoproteins Riboflavin synthase domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
GAF domain-like GAF domain-like 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
Galactose-binding domain-like TSP type-3 repeat 11
Bacterial hemolysins Nucleotide cyclase 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PurS-like PurM N-terminal domain-like 11

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