SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Plasmodium chabaudi

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

625 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 6132
Actin-like ATPase domain Actin-like ATPase domain 189
P-loop containing nucleoside triphosphate hydrolases Translation proteins 1813
RNA-binding domain, RBD RNA-binding domain, RBD 1812
WD40 repeat-like WD40 repeat-like 1210
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 118
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 113
Calcium ATPase, transduction domain A HAD-like 107
GroEL equatorial domain-like GroEL-intermediate domain like 102
TPR-like TPR-like 109
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 104
HAD-like Calcium ATPase, transmembrane domain M 107
GroEL-intermediate domain like GroEL apical domain-like 102
GroEL equatorial domain-like GroEL apical domain-like 102
Ypt/Rab-GAP domain of gyp1p Ypt/Rab-GAP domain of gyp1p 107
Nucleic acid-binding proteins Nucleic acid-binding proteins 99
ARM repeat ARM repeat 98
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 86
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 84
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 87
Translation proteins EF-G C-terminal domain-like 87
EF-G C-terminal domain-like EF-G C-terminal domain-like 87
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 74
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 63
CCCH zinc finger CCCH zinc finger 62
Protein kinase-like (PK-like) EF-hand 63
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 66
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 64
Thioredoxin-like Thioredoxin-like 64
Class II aaRS and biotin synthetases Class II aaRS ABD-related 64
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 65
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 63
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 63
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 53
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 54
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 55
SNARE-like Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 52
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 54
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 55
Chaperone J-domain HSP40/DnaJ peptide-binding domain 55
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 51
Translation proteins Ribosomal protein S5 domain 2-like 54
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 54
EF-hand EF-hand 55
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 51
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 54
ARM repeat Protein kinase-like (PK-like) 54
Quinoprotein alcohol dehydrogenase-like WD40 repeat-like 55
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 54
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 42
SAM/Pointed domain Protein kinase-like (PK-like) 44
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 42
Initiation factor IF2/eIF5b, domain 3 Translation proteins 44
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 41
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 43
Ribonuclease H-like DNA/RNA polymerases 44
Translation proteins SH3-like domain Nucleic acid-binding proteins 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 42
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 43
ARM repeat Clathrin adaptor appendage domain 44
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 44
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 44
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 44
RNA-binding domain, RBD WW domain 44
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 42
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 44
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 41
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 44
SNARE-like SNARE fusion complex 41
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 44
Zn-finger domain of Sec23/24 vWA-like 33
vWA-like Helical domain of Sec23/24 33
Macro domain-like Zn-dependent exopeptidases 32
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
P-loop containing nucleoside triphosphate hydrolases TGS-like 31
ADC-like P-loop containing nucleoside triphosphate hydrolases 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 33
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
Nucleotide cyclase Nucleotide cyclase 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 32
Dipeptidyl peptidase I (cathepsin C), exclusion domain Cysteine proteinases 32
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Zn-finger domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 33
Zn-finger domain of Sec23/24 Helical domain of Sec23/24 33
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Protein kinase-like (PK-like) 33
beta-sandwich domain of Sec23/24 Zn-finger domain of Sec23/24 33
beta-sandwich domain of Sec23/24 vWA-like 33
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 33
EGF/Laminin EGF/Laminin 31
DNA clamp DNA clamp 32
RING/U-box SMAD/FHA domain 32
beta-sandwich domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 33
Ubiquitin-like UBA-like 33
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
HCP-like HCP-like 33
vWA-like C-terminal, gelsolin-like domain of Sec23/24 33
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain SAM/Pointed domain 33
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Sec63 N-terminal domain-like E set domains 33
Single hybrid motif CoA-dependent acyltransferases 33
ADC-like Cdc48 domain 2-like 32
Galactose-binding domain-like Galactose-binding domain-like 33
P-loop containing nucleoside triphosphate hydrolases E set domains 33
FYVE/PHD zinc finger FYVE/PHD zinc finger 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
CRAL/TRIO N-terminal domain CRAL/TRIO domain 33
beta-sandwich domain of Sec23/24 Helical domain of Sec23/24 33
Helical domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 33
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 32
cAMP-binding domain-like cAMP-binding domain-like 33
vWA-like TSP-1 type 1 repeat 33
Cyclin-like Cyclin-like 33
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 32
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Restriction endonuclease-like RuvA domain 2-like 22
RNI-like RNI-like 22
Homeodomain-like Homeodomain-like 22
C2 domain (Calcium/lipid-binding domain, CaLB) C2 domain (Calcium/lipid-binding domain, CaLB) 22
EF-hand Metallo-dependent phosphatases 22
Alpha-L RNA-binding motif Pseudouridine synthase 21
Pseudouridine synthase Pseudouridine synthase 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
E set domains E set domains 22
Thiolase-like Thiolase-like 22
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 22
RING/U-box Cysteine proteinases 22
Cullin repeat-like "Winged helix" DNA-binding domain 21
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 22
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 22
PK beta-barrel domain-like PK C-terminal domain-like 21
GST C-terminal domain-like Nucleotidylyl transferase 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
"Winged helix" DNA-binding domain Sec63 N-terminal domain-like 22
EF-hand PH domain-like 22
Nucleic acid-binding proteins Eukaryotic type KH-domain (KH-domain type I) 22
Thioredoxin-like GST C-terminal domain-like 22
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Cap-Gly domain Ubiquitin-like 22
Cullin homology domain "Winged helix" DNA-binding domain 21
Phosphofructokinase Phosphofructokinase 21
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 22
LCCL domain Concanavalin A-like lectins/glucanases 22
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 22
Zinc beta-ribbon Cyclin-like 22
Ricin B-like lectins LCCL domain 22
Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins 22
HAD-like Nucleotide cyclase 22
Translational machinery components L30e-like 22
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
Calcium ATPase, transduction domain A Nucleotide cyclase 22
Ribonuclease H-like Ribonuclease H-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
PH domain-like Protein kinase-like (PK-like) 22
ARM repeat Subdomain of clathrin and coatomer appendage domain 22
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 21
Galactose-binding domain-like LCCL domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
alpha/beta-Hydrolases alpha/beta-Hydrolases 22
ABC transporter transmembrane region ABC transporter transmembrane region 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
Ribosomal L27 protein-like Nucleic acid-binding proteins 22
Apolipoprotein A-I Bet v1-like 22
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 22
Kelch motif POZ domain 22
Sec63 N-terminal domain-like Sec63 N-terminal domain-like 22
FYVE/PHD zinc finger SET domain 22
Ricin B-like lectins Galactose-binding domain-like 22
Ubiquitin-like Zn-binding ribosomal proteins 21
WW domain FF domain 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 22
Clathrin adaptor appendage domain Subdomain of clathrin and coatomer appendage domain 22
Ankyrin repeat Ankyrin repeat 22
PP2C-like PP2C-like 22
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 22
Calcium ATPase, transmembrane domain M Nucleotide cyclase 22
P-loop containing nucleoside triphosphate hydrolases RING/U-box 22
Chaperone J-domain Thioredoxin-like 22
t-snare proteins SNARE fusion complex 22
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 22
F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 21
P-loop containing nucleoside triphosphate hydrolases WD40 repeat-like 22
Flavoproteins Riboflavin synthase domain-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 22
Nucleotidylyl transferase Ribosomal protein L25-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Nucleotidylyl transferase Nucleotidylyl transferase 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
"Winged helix" DNA-binding domain E set domains 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
Apolipoprotein Bet v1-like 22
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 22
FKBP-like TPR-like 22
Growth factor receptor domain Growth factor receptor domain 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Rad51 N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 22
TATA-box binding protein-like TATA-box binding protein-like 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
vWA-like vWA-like 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Mitochondrial carrier Mitochondrial carrier 22
RCC1/BLIP-II RCC1/BLIP-II 22
Calcium ATPase, transmembrane domain M Calcium ATPase, transmembrane domain M 22
Kelch motif Kelch motif 22
Hect, E3 ligase catalytic domain Hect, E3 ligase catalytic domain 22
Cullin repeat-like Cullin homology domain 21
P-loop containing nucleoside triphosphate hydrolases EF-hand 11
Alpha subunit of glutamate synthase, C-terminal domain FAD/NAD(P)-binding domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Glucocorticoid receptor-like (DNA-binding domain) AN1-like Zinc finger 11
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment DNA breaking-rejoining enzymes 11
FAD-linked reductases, C-terminal domain FYVE/PHD zinc finger 11
Dom34/Pelota N-terminal domain-like Translational machinery components 11
PreATP-grasp domain PreATP-grasp domain 11
RING/U-box RING/U-box 11
"Winged helix" DNA-binding domain HRDC-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Zinc beta-ribbon Zinc beta-ribbon 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
PRP4-like WD40 repeat-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
NagB/RpiA/CoA transferase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
EF-hand PLC-like phosphodiesterases 11
TPR-like Formin homology 2 domain (FH2 domain) 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Class I glutamine amidotransferase-like ADC synthase 11
UBC-like Protein kinase-like (PK-like) 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Growth factor receptor domain Cysteine proteinases 11
PLP-binding barrel Alanine racemase C-terminal domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
FF domain FF domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
SNARE fusion complex SNARE fusion complex 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
alpha/beta-Hydrolases Quinoprotein alcohol dehydrogenase-like 11
Alpha subunit of glutamate synthase, C-terminal domain Nucleotide-binding domain 11
Fibrinogen C-terminal domain-like LCCL domain 11
RNA-binding domain, RBD Surp module (SWAP domain) 11
Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 11
Glucocorticoid receptor-like (DNA-binding domain) RING/U-box 11
SSo0622-like S-adenosyl-L-methionine-dependent methyltransferases 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Glutathione synthetase ATP-binding domain-like 11
YbaK/ProRS associated domain C-terminal domain of ProRS 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Dom34/Pelota N-terminal domain-like L30e-like 11
Galactose oxidase, central domain P-loop containing nucleoside triphosphate hydrolases 11
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Dihydropteroate synthetase-like 11
Class I glutamine amidotransferase-like Glutathione synthetase ATP-binding domain-like 11
Cysteine proteinases Cysteine proteinases 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Protein kinase-like (PK-like) beta-lactamase/transpeptidase-like 11
Chaperone J-domain Homeodomain-like 11
Kringle-like TNF receptor-like 11
TPR-like ARM repeat 11
Ricin B-like lectins Fibrinogen C-terminal domain-like 11
Putative DNA-binding domain Putative DNA-binding domain 11
Protein kinase-like (PK-like) Ypt/Rab-GAP domain of gyp1p 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
GST C-terminal domain-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
DNA primase core Ribonuclease H-like 11
SRCR-like SRCR-like 11
Class I glutamine amidotransferase-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
DNA/RNA polymerases DNA/RNA polymerases 11
PH domain-like Oxysterol-binding protein-like 11
RING/U-box WD40 repeat-like 11
Ribonuclease H-like Formin homology 2 domain (FH2 domain) 11
Chaperone J-domain CSL zinc finger 11
FumA C-terminal domain-like FumA C-terminal domain-like 11
DNA primase core DNA/RNA polymerases 11
P-loop containing nucleoside triphosphate hydrolases Ribonuclease H-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal nucleophile aminohydrolases (Ntn hydrolases) 11
DPP6 N-terminal domain-like GYF domain 11
DNase I-like DNase I-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
YWTD domain Growth factor receptor domain 11
Ubiquitin-like XPC-binding domain 11
Acetyl-CoA synthetase-like DHS-like NAD/FAD-binding domain 11
L domain-like L domain-like 11
Clathrin heavy-chain terminal domain ARM repeat 11
Alpha subunit of glutamate synthase, C-terminal domain alpha-helical ferredoxin 11
Alpha-hemoglobin stabilizing protein AHSP Bet v1-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Quinoprotein alcohol dehydrogenase-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
UBA-like UBA-like 11
BEACH domain WD40 repeat-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Ankyrin repeat Bromodomain 11
GST C-terminal domain-like Ribosomal protein L25-like 11
C2 domain (Calcium/lipid-binding domain, CaLB) Cysteine proteinases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Ran binding protein zinc finger-like RNA-binding domain, RBD 11
TRAF domain-like Pseudouridine synthase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
SNARE-like Domain of the SRP/SRP receptor G-proteins 11
Staphylococcal nuclease Staphylococcal nuclease 11
Chromo domain-like Acyl-CoA N-acyltransferases (Nat) 11
TSP-1 type 1 repeat TSP-1 type 1 repeat 11
PurM N-terminal domain-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 11
Kelch motif Galactose oxidase, central domain 11
Pentapeptide repeat-like SET domain 11
Folate-binding domain TrmE connector domain 11
SNARE-like P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Ribosomal protein L25-like Ribosomal protein L25-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
BRCT domain post-AAA+ oligomerization domain-like 11
TRAF domain-like Cysteine proteinases 11
DNA primase core P-loop containing nucleoside triphosphate hydrolases 11
ClpP/crotonase ClpP/crotonase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
DHS-like NAD/FAD-binding domain Formate/glycerate dehydrogenase catalytic domain-like 11
cAMP-binding domain-like Protein kinase-like (PK-like) 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
PreATP-grasp domain Single hybrid motif 11
RING/U-box Calcium ATPase, transmembrane domain M 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PUG domain-like UBC-like 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) SRCR-like 11
Class I glutamine amidotransferase-like Methylglyoxal synthase-like 11
UBC-like UBA-like 11
Sec1/munc18-like (SM) proteins Sec1/munc18-like (SM) proteins 11
Cysteine proteinases Calpain large subunit, middle domain (domain III) 11
TATA-box binding protein-like DNA-glycosylase 11
Staphylococcal nuclease Tudor/PWWP/MBT 11
Cdc48 domain 2-like RING/U-box 11
S-adenosylmethionine decarboxylase PLP-binding barrel 11
PRP4-like Functional domain of the splicing factor Prp18 11
Formyltransferase FMT C-terminal domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
EF-hand SAICAR synthase-like 11
TPR-like Activator of Hsp90 ATPase, Aha1 11
SMAD/FHA domain RNA-binding domain, RBD 11
Nucleoside diphosphate kinase, NDK Nucleoside diphosphate kinase, NDK 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
Taf5 N-terminal domain-like WD40 repeat-like 11
Cysteine-rich domain Cysteine-rich domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Class II aaRS and biotin synthetases SufE/NifU 11
RNA-binding domain, RBD Tricorn protease domain 2 11
TolB, C-terminal domain WD40 repeat-like 11
Nucleic acid-binding proteins WWE domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
vWA-like Cysteine-rich domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
Trimeric LpxA-like enzymes ARM repeat 11
"Winged helix" DNA-binding domain Protein kinase-like (PK-like) 11
L domain-like Outer arm dynein light chain 1 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
NAD kinase/diacylglycerol kinase-like NAD kinase/diacylglycerol kinase-like 11
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 11
ARM repeat RNI-like 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
Acetyl-CoA synthetase-like Thiamin diphosphate-binding fold (THDP-binding) 11
SRCR-like Concanavalin A-like lectins/glucanases 11
PRTase-like PRTase-like 11
Class I glutamine amidotransferase-like PreATP-grasp domain 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Ypt/Rab-GAP domain of gyp1p Rhodanese/Cell cycle control phosphatase 11
RNA-binding domain, RBD PABC (PABP) domain 11
t-snare proteins t-snare proteins 11
FAD/NAD(P)-binding domain FYVE/PHD zinc finger 11
HMG-box HMG-box 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
VC0467-like VC0467-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins ThrRS/AlaRS common domain 11
TPR-like Chaperone J-domain 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Calponin-homology domain, CH-domain EB1 dimerisation domain-like 11
Activator of Hsp90 ATPase, Aha1 Activator of Hsp90 ATPase, Aha1 11
Ankyrin repeat Arginase/deacetylase 11
Ribosomal L27 protein-like Eukaryotic type KH-domain (KH-domain type I) 11
Growth factor receptor domain Concanavalin A-like lectins/glucanases 11
GST C-terminal domain-like eEF-1beta-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Galactose-binding domain-like Fibrinogen C-terminal domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 11
Elongation factor TFIIS domain 2 Zinc beta-ribbon 11
PreATP-grasp domain ClpP/crotonase 11
SET domain Ankyrin repeat 11
PH domain-like PLC-like phosphodiesterases 11
Single hybrid motif Single hybrid motif 11
LCCL domain SRCR-like 11
Acyl-CoA binding protein Ankyrin repeat 11
EF-hand C2 domain (Calcium/lipid-binding domain, CaLB) 11
ADP-ribosylation B-box zinc-binding domain 11
Chaperone J-domain Sec63 N-terminal domain-like 11
Ubiquitin-like Ubiquitin-like 11
NagB/RpiA/CoA transferase-like NAD(P)-binding Rossmann-fold domains 11
Trypsin-like serine proteases P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif ClpP/crotonase 11
YbiA-like SMAD/FHA domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
DHS-like NAD/FAD-binding domain NAD(P)-binding Rossmann-fold domains 11
PLC-like phosphodiesterases C2 domain (Calcium/lipid-binding domain, CaLB) 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Anthrax protective antigen LCCL domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
CCCH zinc finger RNA-binding domain, RBD 11
Pseudouridine synthase PUA domain-like 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
PUA domain-like SET domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FAD/NAD(P)-binding domain 11
RNI-like Ubiquitin-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Rudiment single hybrid motif Single hybrid motif 11
Kelch motif ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PDZ domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
ISP domain FAD/NAD(P)-binding domain 11
GST C-terminal domain-like Nucleic acid-binding proteins 11
FYSH domain Hypothetical protein AF0491, middle domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
RING/U-box RNA-binding domain, RBD 11
AN1-like Zinc finger AN1-like Zinc finger 11
CBS-domain pair cAMP-binding domain-like 11
alpha/beta knot Nucleic acid-binding proteins 11
GroES-like GroES-like 11
Arginase/deacetylase SAICAR synthase-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Formate/glycerate dehydrogenase catalytic domain-like Formate/glycerate dehydrogenase catalytic domain-like 11
PH domain-like WD40 repeat-like 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
Metalloproteases ("zincins"), catalytic domain 4'-phosphopantetheinyl transferase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PUA domain-like eIF1-like 11
RING/U-box Homeodomain-like 11
Chaperone J-domain E set domains 11
ThrRS/AlaRS common domain Nucleotidylyl transferase 11
FMN-linked oxidoreductases alpha-helical ferredoxin 11
Protein prenylyltransferase L domain-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Nucleic acid-binding proteins eIF2alpha middle domain-like 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Nucleic acid-binding proteins Initiation factor IF2/eIF5b, domain 3 11
ARM repeat "Winged helix" DNA-binding domain 11
Ankyrin repeat Hect, E3 ligase catalytic domain 11
Pre-PUA domain PUA domain-like 11
Phosphoglycerate mutase-like Phosphoglycerate mutase-like 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
P-loop containing nucleoside triphosphate hydrolases Microbial and mitochondrial ADK, insert "zinc finger" domain 11
LCCL domain LCCL domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
SWIB/MDM2 domain eIF1-like 11
ARM repeat ADP-ribosylation 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain PreATP-grasp domain 11
Galactose-binding domain-like ARM repeat 11
Galactose oxidase, central domain S-adenosyl-L-methionine-dependent methyltransferases 11
Thioredoxin-like eEF1-gamma domain 11
POZ domain Skp1 dimerisation domain-like 11
Cap-Gly domain RNI-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Methylglyoxal synthase-like 11
HMG-box Homeodomain-like 11
Chromo domain-like P-loop containing nucleoside triphosphate hydrolases 11
ARM repeat RING/U-box 11
Trypsin-like serine proteases PDZ domain-like 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Acyl-CoA N-acyltransferases (Nat) Bromodomain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Homeodomain-like CHY zinc finger-like 11
ARM repeat Hect, E3 ligase catalytic domain 11
PH domain-like C2 domain (Calcium/lipid-binding domain, CaLB) 11
Nucleotide-diphospho-sugar transferases ARM repeat 11
DNA mismatch repair protein MutL DNA mismatch repair protein MutL 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
SMAD/FHA domain SMAD/FHA domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
S-adenosylmethionine decarboxylase S-adenosylmethionine decarboxylase 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Calpain large subunit, middle domain (domain III) Calpain large subunit, middle domain (domain III) 11
SAICAR synthase-like SAICAR synthase-like 11
YbiA-like RNA-binding domain, RBD 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
RNA-binding domain, RBD Pectin lyase-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
NSFL1 (p97 ATPase) cofactor p47, SEP domain Ubiquitin-like 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
CCCH zinc finger RING/U-box 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Zinc beta-ribbon 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
SSo0622-like Galactose oxidase, central domain 11
DUSP-like Cysteine proteinases 11
Ran binding protein zinc finger-like Ran binding protein zinc finger-like 11
Apolipoprotein Apolipoprotein 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Concanavalin A-like lectins/glucanases 11
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 11
Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
ISP transmembrane anchor ISP domain 11
Putative DNA-binding domain PheT/TilS domain 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Dcp2 domain-like Nudix 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Elongation factor TFIIS domain 2 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) LCCL domain 11
Ankyrin repeat S-adenosyl-L-methionine-dependent methyltransferases 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Cysteine proteinases Protein kinase-like (PK-like) 11
MIT domain P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
S-adenosylmethionine decarboxylase Alanine racemase C-terminal domain-like 11
Rudiment single hybrid motif ClpP/crotonase 11
Galactose oxidase, central domain POZ domain 11
RING/U-box TRAF domain-like 11
FYVE/PHD zinc finger P-loop containing nucleoside triphosphate hydrolases 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Apolipoprotein A-I Apolipoprotein A-I 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Thioredoxin-like Ubiquitin-like 11
Dihydrofolate reductase-like Thymidylate synthase/dCMP hydroxymethylase 11
BRCT domain P-loop containing nucleoside triphosphate hydrolases 11
UBA-like XPC-binding domain 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) Concanavalin A-like lectins/glucanases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
TPR-like PDZ domain-like 11
P-loop containing nucleoside triphosphate hydrolases DNA/RNA polymerases 11
Chromo domain-like Chromo domain-like 11
GroEL apical domain-like SAICAR synthase-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Galactose oxidase, central domain E set domains 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Smc hinge domain Tropomyosin 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Rudiment single hybrid motif 11
Ribosomal protein L6 Ribosomal protein L6 11
CRAL/TRIO domain GTPase activation domain, GAP 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Translation proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) alpha-helical ferredoxin 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Creatinase/aminopeptidase Creatinase/aminopeptidase 11
P-loop containing nucleoside triphosphate hydrolases Rad50 coiled-coil Zn hook 11
beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase 11
PUA domain-like SWIB/MDM2 domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
GST C-terminal domain-like eEF1-gamma domain 11
WD40 repeat-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
FYVE/PHD zinc finger Bromodomain 11
HMG-box Histone-fold 11
Macro domain-like CRAL/TRIO domain 11
Cysteine-rich domain NAD kinase/diacylglycerol kinase-like 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
PH domain-like BEACH domain 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Glutathione synthetase ATP-binding domain-like Phosphoglycerate mutase-like 11
Ubiquitin-like Acid proteases 11
alpha-helical ferredoxin FAD/NAD(P)-binding domain 11
Chaperone J-domain beta-beta-alpha zinc fingers 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Bet v1-like PH domain-like 11
Flavoproteins Radical SAM enzymes 11
Oxysterol-binding protein-like Oxysterol-binding protein-like 11
WW domain WW domain 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
Eukaryotic RPB5 N-terminal domain RPB5-like RNA polymerase subunit 11
Bromodomain SET domain 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Surp module (SWAP domain) Surp module (SWAP domain) 11
Eukaryotic type KH-domain (KH-domain type I) Retrovirus zinc finger-like domains 11
Ubiquitin-like Cysteine proteinases 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
L30e-like alpha/beta knot 11
Thioredoxin-like FAD-dependent thiol oxidase 11
HAD-like BRCT domain 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Nucleotide-binding domain 11
WD40 repeat-like Cyclophilin-like 11
YbaK/ProRS associated domain Class II aaRS and biotin synthetases 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 11
TPR-like Metallo-dependent phosphatases 11
Ribonuclease H-like HRDC-like 11
PX domain WD40 repeat-like 11
Kelch motif Metallo-dependent phosphatases 11
TPR-like RING/U-box 11
Pentapeptide repeat-like FYVE/PHD zinc finger 11
DNA polymerase beta, N-terminal domain-like Restriction endonuclease-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11

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