SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Plasmodium knowlesi strain H

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

648 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 6133
RNA-binding domain, RBD RNA-binding domain, RBD 1910
Actin-like ATPase domain Actin-like ATPase domain 1910
P-loop containing nucleoside triphosphate hydrolases Translation proteins 1814
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 127
HAD-like Calcium ATPase, transmembrane domain M 116
Calcium ATPase, transduction domain A HAD-like 116
ARM repeat ARM repeat 1110
Ypt/Rab-GAP domain of gyp1p Ypt/Rab-GAP domain of gyp1p 106
GroEL-intermediate domain like GroEL apical domain-like 102
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 107
GroEL equatorial domain-like GroEL apical domain-like 102
GroEL equatorial domain-like GroEL-intermediate domain like 102
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 105
Translation proteins EF-G C-terminal domain-like 87
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 87
TPR-like TPR-like 87
EF-G C-terminal domain-like EF-G C-terminal domain-like 87
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 85
Nucleic acid-binding proteins Nucleic acid-binding proteins 87
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 76
WD40 repeat-like WD40 repeat-like 75
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 75
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 73
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 74
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 63
Thioredoxin-like Thioredoxin-like 64
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 63
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 66
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
Protein kinase-like (PK-like) EF-hand 63
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 63
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 64
CCCH zinc finger CCCH zinc finger 62
Chaperone J-domain HSP40/DnaJ peptide-binding domain 64
Class II aaRS and biotin synthetases Class II aaRS ABD-related 64
SNARE-like Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 53
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 53
Translation proteins Ribosomal protein S5 domain 2-like 54
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 52
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 54
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 52
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 54
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 53
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 53
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 54
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 54
Ribonuclease H-like DNA/RNA polymerases 54
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 42
Protein kinase-like (PK-like) ARM repeat 43
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 44
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 44
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 44
SAM/Pointed domain Protein kinase-like (PK-like) 43
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 44
ARM repeat Clathrin adaptor appendage domain 44
Galactose-binding domain-like Galactose-binding domain-like 43
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 42
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 44
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 42
Translation proteins SH3-like domain Nucleic acid-binding proteins 42
Initiation factor IF2/eIF5b, domain 3 Translation proteins 44
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 44
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 43
RNA-binding domain, RBD WW domain 43
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 42
EGF/Laminin EGF/Laminin 42
SNARE-like SNARE fusion complex 41
beta-sandwich domain of Sec23/24 Helical domain of Sec23/24 33
vWA-like Helical domain of Sec23/24 33
RCC1/BLIP-II RCC1/BLIP-II 33
beta-sandwich domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 33
ADC-like P-loop containing nucleoside triphosphate hydrolases 32
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
DNA clamp DNA clamp 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 32
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
t-snare proteins SNARE fusion complex 33
Ubiquitin-like UBA-like 33
ADC-like Cdc48 domain 2-like 32
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 32
Kelch motif Kelch motif 33
Dipeptidyl peptidase I (cathepsin C), exclusion domain Cysteine proteinases 32
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain SAM/Pointed domain 32
E set domains E set domains 32
RING/U-box SMAD/FHA domain 32
Helical domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 33
vWA-like C-terminal, gelsolin-like domain of Sec23/24 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
cAMP-binding domain-like cAMP-binding domain-like 33
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 32
Sec63 N-terminal domain-like E set domains 33
beta-sandwich domain of Sec23/24 vWA-like 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 33
P-loop containing nucleoside triphosphate hydrolases TGS-like 31
Single hybrid motif CoA-dependent acyltransferases 33
P-loop containing nucleoside triphosphate hydrolases E set domains 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Homeodomain-like Homeodomain-like 33
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 33
Cyclin-like Cyclin-like 33
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
Nucleotide cyclase Nucleotide cyclase 33
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Protein kinase-like (PK-like) 32
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 33
FYVE/PHD zinc finger FYVE/PHD zinc finger 33
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 32
HCP-like HCP-like 33
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 33
Phosphoglycerate mutase-like Phosphoglycerate mutase-like 33
Ricin B-like lectins LCCL domain 32
WD40 repeat-like YVTN repeat-like/Quinoprotein amine dehydrogenase 33
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
PP2C-like PP2C-like 33
SET domain FYVE/PHD zinc finger 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 31
Hect, E3 ligase catalytic domain Hect, E3 ligase catalytic domain 22
EF-hand EF-hand 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins 22
EF-hand PH domain-like 22
Calcium ATPase, transmembrane domain M Nucleotide cyclase 22
WD40 repeat-like Quinoprotein alcohol dehydrogenase-like 22
Ypt/Rab-GAP domain of gyp1p Rhodanese/Cell cycle control phosphatase 22
Sec63 N-terminal domain-like Sec63 N-terminal domain-like 22
beta-sandwich domain of Sec23/24 Zn-finger domain of Sec23/24 22
TATA-box binding protein-like TATA-box binding protein-like 22
RNI-like RNI-like 22
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 22
Ricin B-like lectins Fibrinogen C-terminal domain-like 21
ARM repeat Subdomain of clathrin and coatomer appendage domain 22
Pseudouridine synthase Pseudouridine synthase 22
Calcium ATPase, transduction domain A Nucleotide cyclase 22
Nucleotidylyl transferase Nucleotidylyl transferase 22
Cap-Gly domain Ubiquitin-like 22
Nucleic acid-binding proteins Eukaryotic type KH-domain (KH-domain type I) 22
Zn-finger domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 22
GST C-terminal domain-like Nucleotidylyl transferase 22
Galactose-binding domain-like Ricin B-like lectins 21
P-loop containing nucleoside triphosphate hydrolases WD40 repeat-like 22
Phosphofructokinase Phosphofructokinase 21
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Mitochondrial carrier Mitochondrial carrier 22
Fibrinogen C-terminal domain-like LCCL domain 21
Zn-finger domain of Sec23/24 Helical domain of Sec23/24 22
vWA-like TSP-1 type 1 repeat 22
ABC transporter transmembrane region ABC transporter transmembrane region 22
Alpha-L RNA-binding motif Pseudouridine synthase 21
Cullin repeat-like "Winged helix" DNA-binding domain 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
PK beta-barrel domain-like PK C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Zn-finger domain of Sec23/24 vWA-like 22
P-loop containing nucleoside triphosphate hydrolases RING/U-box 22
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 22
Anthrax protective antigen LCCL domain 22
HAD-like BRCT domain 22
Growth factor receptor domain Growth factor receptor domain 22
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 22
Rad51 N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 21
Thioredoxin-like GST C-terminal domain-like 22
RING/U-box Cysteine proteinases 22
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 22
Thiolase-like Thiolase-like 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 21
EF-hand Metallo-dependent phosphatases 22
Translational machinery components L30e-like 22
Ribonuclease H-like Ribonuclease H-like 22
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Kelch motif POZ domain 22
Restriction endonuclease-like RuvA domain 2-like 22
HAD-like Nucleotide cyclase 22
Cullin homology domain "Winged helix" DNA-binding domain 22
Galactose-binding domain-like Fibrinogen C-terminal domain-like 21
Phage fibre proteins Phage fibre proteins 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 22
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 22
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 22
CRAL/TRIO N-terminal domain CRAL/TRIO domain 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 21
C2 domain (Calcium/lipid-binding domain, CaLB) C2 domain (Calcium/lipid-binding domain, CaLB) 22
Galactose-binding domain-like LCCL domain 21
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Flavoproteins Riboflavin synthase domain-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Chaperone J-domain Thioredoxin-like 22
Ribosomal L27 protein-like Nucleic acid-binding proteins 22
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 22
RING/U-box RNA-binding domain, RBD 22
Nucleotidylyl transferase Ribosomal protein L25-like 22
WW domain FF domain 22
Clathrin adaptor appendage domain Subdomain of clathrin and coatomer appendage domain 22
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 22
Cullin repeat-like Cullin homology domain 22
LCCL domain Concanavalin A-like lectins/glucanases 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Zinc beta-ribbon Cyclin-like 22
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
ARM repeat Hect, E3 ligase catalytic domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain PreATP-grasp domain 11
Clathrin heavy-chain terminal domain ARM repeat 11
EF-hand SAICAR synthase-like 11
DNA polymerase beta, N-terminal domain-like Restriction endonuclease-like 11
Ubiquitin-like Zn-binding ribosomal proteins 11
YbiA-like RNA-binding domain, RBD 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Chromo domain-like P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal nucleophile aminohydrolases (Ntn hydrolases) 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
LCCL domain SRCR-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
CRAL/TRIO domain GTPase activation domain, GAP 11
RNA-binding domain, RBD PABC (PABP) domain 11
SSo0622-like Galactose oxidase, central domain 11
Acyl-CoA N-acyltransferases (Nat) Bromodomain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Staphylococcal nuclease Staphylococcal nuclease 11
Class I glutamine amidotransferase-like ADC synthase 11
PH domain-like PLC-like phosphodiesterases 11
ARM repeat vWA-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
TATA-box binding protein-like DNA-glycosylase 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
PRTase-like PRTase-like 11
YbaK/ProRS associated domain Class II aaRS and biotin synthetases 11
Thioredoxin-like eEF1-gamma domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
Kelch motif Metallo-dependent phosphatases 11
Transcription factor IIA (TFIIA), beta-barrel domain FAD/NAD(P)-binding domain 11
TPR-like ARM repeat 11
Kelch motif E set domains 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
L30e-like alpha/beta knot 11
NSFL1 (p97 ATPase) cofactor p47, SEP domain Ubiquitin-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
PUA domain-like SET domain 11
Nucleic acid-binding proteins Initiation factor IF2/eIF5b, domain 3 11
Calponin-homology domain, CH-domain EB1 dimerisation domain-like 11
Outer arm dynein light chain 1 L domain-like 11
cAMP-binding domain-like Protein kinase-like (PK-like) 11
Clavaminate synthase-like Clavaminate synthase-like 11
VC0467-like VC0467-like 11
Ubiquitin-like Ubiquitin-like 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Eukaryotic type KH-domain (KH-domain type I) Retrovirus zinc finger-like domains 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Ricin B-like lectins Concanavalin A-like lectins/glucanases 11
DNA ligase/mRNA capping enzyme, catalytic domain DNA ligase/mRNA capping enzyme, catalytic domain 11
NagB/RpiA/CoA transferase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Dom34/Pelota N-terminal domain-like L30e-like 11
Cap-Gly domain L domain-like 11
Acyl-CoA binding protein Ankyrin repeat 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Putative DNA-binding domain 11
FAD-linked reductases, C-terminal domain FYVE/PHD zinc finger 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
RING/U-box Homeodomain-like 11
Pre-PUA domain PUA domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Sec1/munc18-like (SM) proteins Sec1/munc18-like (SM) proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Trypsin-like serine proteases PDZ domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Class II aaRS and biotin synthetases SufE/NifU 11
Ribonuclease H-like HRDC-like 11
Pseudouridine synthase PUA domain-like 11
Staphylococcal nuclease Tudor/PWWP/MBT 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain WD40 repeat-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Galactose oxidase, central domain S-adenosyl-L-methionine-dependent methyltransferases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
LCCL domain LCCL domain 11
Ubiquitin-like Cysteine proteinases 11
ISP domain FAD/NAD(P)-binding domain 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 11
WW domain WW domain 11
Metalloproteases ("zincins"), catalytic domain 4'-phosphopantetheinyl transferase 11
Galactose oxidase, central domain Metallo-dependent phosphatases 11
UBC-like Protein kinase-like (PK-like) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DPP6 N-terminal domain-like GYF domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
Formate/glycerate dehydrogenase catalytic domain-like Formate/glycerate dehydrogenase catalytic domain-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Cysteine proteinases Cysteine proteinases 11
DHS-like NAD/FAD-binding domain NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Ribonuclease H-like 11
UBC-like UBA-like 11
FKBP-like TPR-like 11
FYVE/PHD zinc finger P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Galactose-binding domain-like ARM repeat 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Dihydrofolate reductase-like Thymidylate synthase/dCMP hydroxymethylase 11
TPR-like RING/U-box 11
Trimeric LpxA-like enzymes ARM repeat 11
Ankyrin repeat S-adenosyl-L-methionine-dependent methyltransferases 11
Single hybrid motif Single hybrid motif 11
WD40 repeat-like Tricorn protease N-terminal domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
SET domain SET domain 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Zinc beta-ribbon 11
PDZ domain-like P-loop containing nucleoside triphosphate hydrolases 11
PRP4-like WD40 repeat-like 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) LCCL domain 11
CCCH zinc finger RING/U-box 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Formyltransferase FMT C-terminal domain-like 11
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Dihydropteroate synthetase-like 11
SMAD/FHA domain SMAD/FHA domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Ankyrin repeat Ankyrin repeat 11
Cdc48 domain 2-like RING/U-box 11
Ribosomal protein L6 Ribosomal protein L6 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Sialidases Oligoxyloglucan reducing end-specific cellobiohydrolase 11
Ubiquitin-like Acid proteases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Glutathione synthetase ATP-binding domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Single hybrid motif ClpP/crotonase 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair cAMP-binding domain-like 11
EF-hand C2 domain (Calcium/lipid-binding domain, CaLB) 11
SNARE-like P-loop containing nucleoside triphosphate hydrolases 11
Arginase/deacetylase SAICAR synthase-like 11
NAD(P)-linked oxidoreductase NAD(P)-linked oxidoreductase 11
DUSP-like Cysteine proteinases 11
PUA domain-like SWIB/MDM2 domain 11
PH domain-like BEACH domain 11
Kringle-like Growth factor receptor domain 11
DNA mismatch repair protein MutL DNA mismatch repair protein MutL 11
Nucleotide-diphospho-sugar transferases ARM repeat 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
BEACH domain WD40 repeat-like 11
YbaK/ProRS associated domain C-terminal domain of ProRS 11
P-loop containing nucleoside triphosphate hydrolases Rad50 coiled-coil Zn hook 11
tRNA-binding arm Class II aaRS and biotin synthetases 11
Trypsin-like serine proteases P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
NHL repeat WD40 repeat-like 11
Calpain large subunit, middle domain (domain III) Calpain large subunit, middle domain (domain III) 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
CCCH zinc finger RNA-binding domain, RBD 11
Putative DNA-binding domain PheT/TilS domain 11
Retrovirus zinc finger-like domains RING/U-box 11
Activator of Hsp90 ATPase, Aha1 Activator of Hsp90 ATPase, Aha1 11
P-loop containing nucleoside triphosphate hydrolases EF-hand 11
Acetyl-CoA synthetase-like DHS-like NAD/FAD-binding domain 11
POZ domain Skp1 dimerisation domain-like 11
SMAD/FHA domain RNA-binding domain, RBD 11
RNA-binding domain, RBD Eukaryotic type KH-domain (KH-domain type I) 11
Zinc beta-ribbon Zinc beta-ribbon 11
Chromo domain-like Acyl-CoA N-acyltransferases (Nat) 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
P-loop containing nucleoside triphosphate hydrolases Concanavalin A-like lectins/glucanases 11
Alpha subunit of glutamate synthase, C-terminal domain alpha-helical ferredoxin 11
Glucocorticoid receptor-like (DNA-binding domain) RING/U-box 11
PLC-like phosphodiesterases C2 domain (Calcium/lipid-binding domain, CaLB) 11
PreATP-grasp domain Single hybrid motif 11
UBA-like XPC-binding domain 11
Ran binding protein zinc finger-like RNA-binding domain, RBD 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Rudiment single hybrid motif ClpP/crotonase 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PUA domain-like eIF1-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
DNA-glycosylase Nudix 11
FYSH domain Hypothetical protein AF0491, middle domain 11
Thioredoxin-like FAD-dependent thiol oxidase 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Cysteine-rich domain NAD kinase/diacylglycerol kinase-like 11
SRCR-like SRCR-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Chromo domain-like Chromo domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment DNA breaking-rejoining enzymes 11
C2 domain (Calcium/lipid-binding domain, CaLB) Caspase-like 11
WD40 repeat-like Cyclophilin-like 11
Ankyrin repeat Hect, E3 ligase catalytic domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
DHS-like NAD/FAD-binding domain Formate/glycerate dehydrogenase catalytic domain-like 11
TPR-like Formin homology 2 domain (FH2 domain) 11
TPR-like Metallo-dependent phosphatases 11
GroEL apical domain-like SAICAR synthase-like 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
L domain-like Ubiquitin-like 11
Kelch motif ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) alpha-helical ferredoxin 11
Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 11
"Winged helix" DNA-binding domain Protein kinase-like (PK-like) 11
Chaperone J-domain CSL zinc finger 11
BRCT domain post-AAA+ oligomerization domain-like 11
Ran binding protein zinc finger-like Ran binding protein zinc finger-like 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Class I glutamine amidotransferase-like Methylglyoxal synthase-like 11
PurM N-terminal domain-like PurM C-terminal domain-like 11
Chaperone J-domain beta-beta-alpha zinc fingers 11
FF domain FF domain 11
ThrRS/AlaRS common domain Nucleotidylyl transferase 11
Translation proteins Translation proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
BRCT domain DNA/RNA polymerases 11
Elongation factor TFIIS domain 2 Zinc beta-ribbon 11
Citrate synthase Citrate synthase 11
Eukaryotic RPB5 N-terminal domain RPB5-like RNA polymerase subunit 11
Cysteine proteinases Calpain large subunit, middle domain (domain III) 11
PreATP-grasp domain ClpP/crotonase 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
RING/U-box RING/U-box 11
PreATP-grasp domain PreATP-grasp domain 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 11
DNA primase core P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 11
Ribosomal L27 protein-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases ARM repeat 11
Nucleic acid-binding proteins eIF2alpha middle domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
"Winged helix" DNA-binding domain HRDC-like 11
Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 11
PX domain WD40 repeat-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Methylglyoxal synthase-like 11
Alanine racemase C-terminal domain-like Alanine racemase C-terminal domain-like 11
L domain-like L domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
NagB/RpiA/CoA transferase-like NAD(P)-binding Rossmann-fold domains 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
RNA-binding domain, RBD Tricorn protease domain 2 11
Glucocorticoid receptor-like (DNA-binding domain) AN1-like Zinc finger 11
DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes 11
ADP-ribosylation B-box zinc-binding domain 11
DNA primase core DNA/RNA polymerases 11
SAP domain FYVE/PHD zinc finger 11
SNARE-like Domain of the SRP/SRP receptor G-proteins 11
Chaperone J-domain E set domains 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Folate-binding domain Folate-binding domain 11
BRCT domain P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FAD/NAD(P)-binding domain 11
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Adhesin YadA, collagen-binding domain 11
PH domain-like Protein kinase-like (PK-like) 11
alpha/beta knot Nucleic acid-binding proteins 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
Ankyrin repeat Arginase/deacetylase 11
Acetyl-CoA synthetase-like Thiamin diphosphate-binding fold (THDP-binding) 11
Creatinase/aminopeptidase Creatinase/aminopeptidase 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Rudiment single hybrid motif Single hybrid motif 11
PUG domain-like Ubiquitin-like 11
RNA-binding domain, RBD Surp module (SWAP domain) 11
beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
ARM repeat "Winged helix" DNA-binding domain 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) Concanavalin A-like lectins/glucanases 11
Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 11
Macro domain-like Zn-dependent exopeptidases 11
DNA primase core Ribonuclease H-like 11
Nucleic acid-binding proteins WWE domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
C2 domain (Calcium/lipid-binding domain, CaLB) Cysteine proteinases 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 11
Galactose oxidase, central domain Galactose oxidase, central domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Kelch motif Galactose oxidase, central domain 11
Thioredoxin-like Ubiquitin-like 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
EF-hand PLC-like phosphodiesterases 11
HMG-box Histone-fold 11
TPR-like Activator of Hsp90 ATPase, Aha1 11
YWTD domain Growth factor receptor domain 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
GST C-terminal domain-like eEF-1beta-like 11
PLP-binding barrel Alanine racemase C-terminal domain-like 11
Protein kinase-like (PK-like) Rhodanese/Cell cycle control phosphatase 11
Chaperone J-domain Homeodomain-like 11
Arginase/deacetylase Arginase/deacetylase 11
ISP transmembrane anchor ISP domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Voltage-gated potassium channels Pentapeptide repeat-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
SET domain HIT/MYND zinc finger-like 11
ARM repeat Multidrug efflux transporter AcrB transmembrane domain 11
FAD/NAD(P)-binding domain FYVE/PHD zinc finger 11
alpha-helical ferredoxin FAD/NAD(P)-binding domain 11
Protein kinase-like (PK-like) Ypt/Rab-GAP domain of gyp1p 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
AN1-like Zinc finger AN1-like Zinc finger 11
TPR-like Chaperone J-domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
vWA-like Cysteine-rich domain 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Type II DNA topoisomerase Type II DNA topoisomerase 11
Chaperone J-domain Sec63 N-terminal domain-like 11
Acid proteases Acid proteases 11
P-loop containing nucleoside triphosphate hydrolases RCC1/BLIP-II 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins ThrRS/AlaRS common domain 11
GST C-terminal domain-like Ribosomal protein L25-like 11
SWIB/MDM2 domain eIF1-like 11
"Winged helix" DNA-binding domain E set domains 11
ARM repeat Sec7 domain 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Taf5 N-terminal domain-like WD40 repeat-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
SET domain Ankyrin repeat 11
TRAF domain-like Pseudouridine synthase 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
PH domain-like Cysteine proteinases 11
S-adenosylmethionine decarboxylase Alanine racemase C-terminal domain-like 11
FYVE/PHD zinc finger Bromodomain 11
Tropomyosin Myosin rod fragments 11
Folate-binding domain TrmE connector domain 11
Alpha subunit of glutamate synthase, C-terminal domain FAD/NAD(P)-binding domain 11
Kringle-like Calcium ATPase, transmembrane domain M 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Ankyrin repeat Bromodomain 11
Dihydropteroate synthetase-like Adhesin YadA, collagen-binding domain 11
TPR-like "Winged helix" DNA-binding domain 11
Bromodomain SET domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
SRCR-like Concanavalin A-like lectins/glucanases 11
SAICAR synthase-like SAICAR synthase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Ubiquitin-like XPC-binding domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Alpha subunit of glutamate synthase, C-terminal domain Nucleotide-binding domain 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Elongation factor TFIIS domain 2 11
PH domain-like C2 domain (Calcium/lipid-binding domain, CaLB) 11
PUG domain-like UBC-like 11
Class I glutamine amidotransferase-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Class I glutamine amidotransferase-like PreATP-grasp domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Tricorn protease domain 2 WD40 repeat-like 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) SRCR-like 11
Nucleic acid-binding proteins Translation proteins 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
Nucleoside diphosphate kinase, NDK Nucleoside diphosphate kinase, NDK 11
ClpP/crotonase ClpP/crotonase 11
HMG-box HMG-box 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Sec63 N-terminal domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
TPR-like PDZ domain-like 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 11
PH domain-like Oxysterol-binding protein-like 11
FMN-linked oxidoreductases alpha-helical ferredoxin 11
Kelch motif P-loop containing nucleoside triphosphate hydrolases 11
Protein kinase-like (PK-like) beta-lactamase/transpeptidase-like 11
PLC-like phosphodiesterases PLC-like phosphodiesterases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Class II aaRS and biotin synthetases Translation proteins 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Class II aaRS ABD-related Class II aaRS ABD-related 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Nucleotide-binding domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases DNA/RNA polymerases 11
Surp module (SWAP domain) Surp module (SWAP domain) 11
PreATP-grasp domain Rudiment single hybrid motif 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Dom34/Pelota N-terminal domain-like Translational machinery components 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
MIT domain P-loop containing nucleoside triphosphate hydrolases 11
GST C-terminal domain-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
TRAF domain-like Cysteine proteinases 11
Protein prenylyltransferase Outer arm dynein light chain 1 11
NAD kinase/diacylglycerol kinase-like NAD kinase/diacylglycerol kinase-like 11
Zinc-binding domain of translation initiation factor 2 beta ARM repeat 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
ARM repeat RING/U-box 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
PRP4-like Functional domain of the splicing factor Prp18 11
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 11
HMG-box Homeodomain-like 11
Rhodanese/Cell cycle control phosphatase (Phosphotyrosine protein) phosphatases II 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Class I glutamine amidotransferase-like Glutathione synthetase ATP-binding domain-like 11
PH domain-like WD40 repeat-like 11
S-adenosylmethionine decarboxylase PLP-binding barrel 11
GST C-terminal domain-like eEF1-gamma domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
UBA-like UBA-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain ARM repeat 11
Growth factor receptor domain Calcium ATPase, transmembrane domain M 11
GroES-like GroES-like 11
RING/U-box WD40 repeat-like 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
EPT/RTPC-like EPT/RTPC-like 11
beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Flavoproteins Radical SAM enzymes 11
Dcp2 domain-like Nudix 11
Ricin B-like lectins Anthrax protective antigen 11
GST C-terminal domain-like Nucleic acid-binding proteins 11
Anthrax protective antigen Concanavalin A-like lectins/glucanases 11
YbiA-like SMAD/FHA domain 11
SSo0622-like S-adenosyl-L-methionine-dependent methyltransferases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
SNARE fusion complex SNARE fusion complex 11
Macro domain-like CRAL/TRIO domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11

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