SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Plasmodium berghei ANKA

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

633 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 6130
RNA-binding domain, RBD RNA-binding domain, RBD 1911
Actin-like ATPase domain Actin-like ATPase domain 1810
P-loop containing nucleoside triphosphate hydrolases Translation proteins 1813
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 113
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 117
GroEL equatorial domain-like GroEL apical domain-like 102
Ypt/Rab-GAP domain of gyp1p Ypt/Rab-GAP domain of gyp1p 107
GroEL equatorial domain-like GroEL-intermediate domain like 102
GroEL-intermediate domain like GroEL apical domain-like 102
Calcium ATPase, transduction domain A HAD-like 106
WD40 repeat-like WD40 repeat-like 108
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 104
HAD-like Calcium ATPase, transmembrane domain M 106
ARM repeat ARM repeat 98
Nucleic acid-binding proteins Nucleic acid-binding proteins 88
EF-G C-terminal domain-like EF-G C-terminal domain-like 87
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 84
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 86
TPR-like TPR-like 87
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 87
Translation proteins EF-G C-terminal domain-like 87
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 74
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 75
CCCH zinc finger CCCH zinc finger 62
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 66
Thioredoxin-like Thioredoxin-like 64
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 63
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
Class II aaRS and biotin synthetases Class II aaRS ABD-related 64
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 63
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 63
EF-hand Protein kinase-like (PK-like) 63
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 64
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 65
SNARE-like Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 52
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 54
Translation proteins Ribosomal protein S5 domain 2-like 54
Chaperone J-domain HSP40/DnaJ peptide-binding domain 55
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 54
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 54
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 54
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 51
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 55
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 53
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 51
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 54
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 55
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 43
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 42
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 44
RNA-binding domain, RBD WW domain 44
EF-hand EF-hand 44
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 44
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 42
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 41
EGF/Laminin EGF/Laminin 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 42
SAM/Pointed domain Protein kinase-like (PK-like) 44
ARM repeat Protein kinase-like (PK-like) 43
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 41
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 44
SNARE-like SNARE fusion complex 41
Translation proteins SH3-like domain Nucleic acid-binding proteins 42
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 42
Ribonuclease H-like DNA/RNA polymerases 44
Translation proteins Initiation factor IF2/eIF5b, domain 3 44
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 44
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 44
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 44
ARM repeat Clathrin adaptor appendage domain 44
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 32
ADC-like Cdc48 domain 2-like 32
Dipeptidyl peptidase I (cathepsin C), exclusion domain Cysteine proteinases 32
FYVE/PHD zinc finger FYVE/PHD zinc finger 33
vWA-like TSP-1 type 1 repeat 33
Sec63 N-terminal domain-like E set domains 33
P-loop containing nucleoside triphosphate hydrolases TGS-like 31
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Protein kinase-like (PK-like) 33
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
RNI-like RNI-like 32
Galactose-binding domain-like Galactose-binding domain-like 33
cAMP-binding domain-like cAMP-binding domain-like 33
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 32
Nucleotide cyclase Nucleotide cyclase 33
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
E set domains P-loop containing nucleoside triphosphate hydrolases 33
CRAL/TRIO N-terminal domain CRAL/TRIO domain 33
WD40 repeat-like Quinoprotein alcohol dehydrogenase-like 33
HCP-like HCP-like 33
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 32
beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase 32
ADC-like P-loop containing nucleoside triphosphate hydrolases 32
Cyclin-like Cyclin-like 33
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 33
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
beta-sandwich domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 33
Zn-finger domain of Sec23/24 Helical domain of Sec23/24 33
PP2C-like PP2C-like 32
Zn-finger domain of Sec23/24 vWA-like 33
Ubiquitin-like UBA-like 33
beta-sandwich domain of Sec23/24 Helical domain of Sec23/24 33
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 32
Single hybrid motif CoA-dependent acyltransferases 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
vWA-like beta-sandwich domain of Sec23/24 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Helical domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 33
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain SAM/Pointed domain 33
Zn-finger domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 33
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 32
DNA clamp DNA clamp 32
vWA-like Helical domain of Sec23/24 33
t-snare proteins SNARE fusion complex 32
RCC1/BLIP-II RCC1/BLIP-II 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Zn-finger domain of Sec23/24 beta-sandwich domain of Sec23/24 33
vWA-like C-terminal, gelsolin-like domain of Sec23/24 33
RING/U-box SMAD/FHA domain 32
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 22
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Ricin B-like lectins Galactose-binding domain-like 22
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 22
Cullin homology domain "Winged helix" DNA-binding domain 22
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 22
Calcium ATPase, transduction domain A Nucleotide cyclase 22
Anthrax protective antigen LCCL domain 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
RING/U-box RING/U-box 22
TATA-box binding protein-like TATA-box binding protein-like 22
Thioredoxin-like GST C-terminal domain-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 22
FKBP-like TPR-like 22
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 22
ARM repeat Subdomain of clathrin and coatomer appendage domain 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
Ankyrin repeat Ankyrin repeat 22
Flavoproteins Riboflavin synthase domain-like 22
Cullin repeat-like Cullin homology domain 22
Phosphofructokinase Phosphofructokinase 21
Kelch motif Kelch motif 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 22
Nucleotidylyl transferase Nucleotidylyl transferase 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Nucleotidylyl transferase Ribosomal protein L25-like 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
EF-hand Metallo-dependent phosphatases 22
Pseudouridine synthase Pseudouridine synthase 22
P-loop containing nucleoside triphosphate hydrolases WD40 repeat-like 22
Nucleic acid-binding proteins Eukaryotic type KH-domain (KH-domain type I) 22
Restriction endonuclease-like RuvA domain 2-like 22
Ribonuclease H-like Ribonuclease H-like 22
Cullin repeat-like "Winged helix" DNA-binding domain 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 21
Sec63 N-terminal domain-like Sec63 N-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases RING/U-box 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins 22
Translational machinery components L30e-like 22
Ubiquitin-like Zn-binding ribosomal proteins 21
GST C-terminal domain-like Nucleotidylyl transferase 22
Hect, E3 ligase catalytic domain Hect, E3 ligase catalytic domain 22
F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 21
"Winged helix" DNA-binding domain E set domains 22
Cap-Gly domain Ubiquitin-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
vWA-like vWA-like 22
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 22
WW domain FF domain 22
Rad51 N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 21
Growth factor receptor domain Growth factor receptor domain 22
Clathrin adaptor appendage domain Subdomain of clathrin and coatomer appendage domain 22
HAD-like Nucleotide cyclase 22
ABC transporter transmembrane region ABC transporter transmembrane region 22
"Winged helix" DNA-binding domain Sec63 N-terminal domain-like 22
Homeodomain-like Homeodomain-like 22
Zinc beta-ribbon Cyclin-like 22
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 22
LCCL domain Concanavalin A-like lectins/glucanases 22
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
E set domains E set domains 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
RING/U-box Cysteine proteinases 22
Ribosomal L27 protein-like Nucleic acid-binding proteins 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
PK beta-barrel domain-like PK C-terminal domain-like 21
Thiolase-like Thiolase-like 22
Galactose-binding domain-like LCCL domain 22
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 22
Galactose oxidase, central domain POZ domain 22
Cysteine proteinases Cysteine proteinases 22
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 22
Alpha-L RNA-binding motif Pseudouridine synthase 21
PH domain-like Protein kinase-like (PK-like) 22
Chaperone J-domain Thioredoxin-like 22
SET domain FYVE/PHD zinc finger 22
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Kelch motif Galactose oxidase, central domain 22
Calcium ATPase, transmembrane domain M Nucleotide cyclase 22
C2 domain (Calcium/lipid-binding domain, CaLB) C2 domain (Calcium/lipid-binding domain, CaLB) 22
Ricin B-like lectins LCCL domain 22
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 22
Glutathione synthetase ATP-binding domain-like Phosphoglycerate mutase-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain HRDC-like 11
LCCL domain SRCR-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FAD/NAD(P)-binding domain 11
Phage fibre proteins Phage fibre proteins 11
Methyl-accepting chemotaxis protein (MCP) signaling domain WD40 repeat-like 11
NagB/RpiA/CoA transferase-like NAD(P)-binding Rossmann-fold domains 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleic acid-binding proteins Initiation factor IF2/eIF5b, domain 3 11
Macro domain-like Zn-dependent exopeptidases 11
Quinoprotein alcohol dehydrogenase-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
HAD-like BRCT domain 11
Dehydroquinate synthase-like EPT/RTPC-like 11
Acyl-CoA N-acyltransferases (Nat) Bromodomain 11
SAICAR synthase-like SAICAR synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
Pectin lyase-like HD-domain/PDEase-like 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
Pentapeptide repeat-like SET domain 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) LCCL domain 11
P-loop containing nucleoside triphosphate hydrolases Ribonuclease H-like 11
Activating enzymes of the ubiquitin-like proteins Rhodanese/Cell cycle control phosphatase 11
Class I glutamine amidotransferase-like Glutathione synthetase ATP-binding domain-like 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
EF-hand PH domain-like 11
POZ domain Skp1 dimerisation domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Arginase/deacetylase SAICAR synthase-like 11
Mitochondrial carrier Mitochondrial carrier 11
Ankyrin repeat Arginase/deacetylase 11
Cysteine-rich domain Cysteine-rich domain 11
BRCT domain P-loop containing nucleoside triphosphate hydrolases 11
MIT domain P-loop containing nucleoside triphosphate hydrolases 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Pseudouridine synthase PUA domain-like 11
Cyclin-like Smc hinge domain 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Elongation factor TFIIS domain 2 11
Phosphoglycerate mutase-like Phosphoglycerate mutase-like 11
PreATP-grasp domain PreATP-grasp domain 11
Trimeric LpxA-like enzymes ARM repeat 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Glutathione synthetase ATP-binding domain-like 11
Staphylococcal nuclease Tudor/PWWP/MBT 11
AN1-like Zinc finger AN1-like Zinc finger 11
SNARE-like Domain of the SRP/SRP receptor G-proteins 11
Fibrinogen C-terminal domain-like LCCL domain 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Single hybrid motif 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nucleotide-diphospho-sugar transferases ARM repeat 11
RING/U-box TRAF domain-like 11
UBA-like UBA-like 11
Galactose oxidase, central domain S-adenosyl-L-methionine-dependent methyltransferases 11
L30e-like alpha/beta knot 11
DNA/RNA polymerases DNA/RNA polymerases 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Calcium ATPase, transmembrane domain M Calcium ATPase, transmembrane domain M 11
Bet v1-like PH domain-like 11
Single hybrid motif ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Nucleic acid-binding proteins Translation proteins 11
PRP4-like WD40 repeat-like 11
HMG-box Homeodomain-like 11
Cdc48 domain 2-like RING/U-box 11
Ypt/Rab-GAP domain of gyp1p Rhodanese/Cell cycle control phosphatase 11
Calpain large subunit, middle domain (domain III) Calpain large subunit, middle domain (domain III) 11
Galactose-binding domain-like Fibrinogen C-terminal domain-like 11
TSP-1 type 1 repeat TSP-1 type 1 repeat 11
Kelch motif E set domains 11
TRAF domain-like Cysteine proteinases 11
Calponin-homology domain, CH-domain EB1 dimerisation domain-like 11
DNA primase core P-loop containing nucleoside triphosphate hydrolases 11
YbiA-like RNA-binding domain, RBD 11
Class I glutamine amidotransferase-like PreATP-grasp domain 11
DNA mismatch repair protein MutL DNA mismatch repair protein MutL 11
GroEL apical domain-like SAICAR synthase-like 11
DHS-like NAD/FAD-binding domain NAD(P)-binding Rossmann-fold domains 11
PRP4-like Functional domain of the splicing factor Prp18 11
UBC-like UBA-like 11
P-loop containing nucleoside triphosphate hydrolases EF-hand 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
CCCH zinc finger RNA-binding domain, RBD 11
Chaperone J-domain CSL zinc finger 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Ubiquitin-like XPC-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
SMAD/FHA domain RNA-binding domain, RBD 11
Ran binding protein zinc finger-like Ran binding protein zinc finger-like 11
Kelch motif Metallo-dependent phosphatases 11
C2 domain (Calcium/lipid-binding domain, CaLB) Cysteine proteinases 11
Protein kinase-like (PK-like) beta-lactamase/transpeptidase-like 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Nucleic acid-binding proteins eIF2alpha middle domain-like 11
Chaperone J-domain beta-beta-alpha zinc fingers 11
"Winged helix" DNA-binding domain Protein kinase-like (PK-like) 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Chaperone J-domain Homeodomain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
SMAD/FHA domain SMAD/FHA domain 11
Rudiment single hybrid motif ClpP/crotonase 11
Kelch motif POZ domain 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
EPT/RTPC-like EPT/RTPC-like 11
GST C-terminal domain-like Nucleic acid-binding proteins 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) SRCR-like 11
Bromodomain SET domain 11
S-adenosylmethionine decarboxylase PLP-binding barrel 11
ADP-ribosylation B-box zinc-binding domain 11
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 11
PH domain-like WD40 repeat-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Methylglyoxal synthase-like 11
RmlC-like cupins RmlC-like cupins 11
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 11
DNA polymerase beta, N-terminal domain-like Restriction endonuclease-like 11
NSFL1 (p97 ATPase) cofactor p47, SEP domain Ubiquitin-like 11
FMN-linked oxidoreductases alpha-helical ferredoxin 11
GroES-like GroES-like 11
BEACH domain WD40 repeat-like 11
Surp module (SWAP domain) Surp module (SWAP domain) 11
Sec1/munc18-like (SM) proteins Sec1/munc18-like (SM) proteins 11
Macro domain-like CRAL/TRIO domain 11
Ankyrin repeat Hect, E3 ligase catalytic domain 11
Ribosomal protein L6 Ribosomal protein L6 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
WD40 repeat-like Cyclophilin-like 11
Chaperone J-domain E set domains 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
RING/U-box RNA-binding domain, RBD 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 11
TPR-like Formin homology 2 domain (FH2 domain) 11
EF-hand SAICAR synthase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Taf5 N-terminal domain-like 11
Chromo domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleoside diphosphate kinase, NDK Nucleoside diphosphate kinase, NDK 11
ClpP/crotonase ClpP/crotonase 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
TPR-like Metallo-dependent phosphatases 11
Flavoproteins Radical SAM enzymes 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Anthrax protective antigen Concanavalin A-like lectins/glucanases 11
Thioredoxin-like Ubiquitin-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
alpha/beta knot Nucleic acid-binding proteins 11
Oxysterol-binding protein-like Oxysterol-binding protein-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Alpha subunit of glutamate synthase, C-terminal domain FAD/NAD(P)-binding domain 11
Class II aaRS and biotin synthetases Translation proteins 11
RNA-binding domain, RBD Surp module (SWAP domain) 11
NAD kinase/diacylglycerol kinase-like NAD kinase/diacylglycerol kinase-like 11
RING/U-box Calcium ATPase, transmembrane domain M 11
CRAL/TRIO domain GTPase activation domain, GAP 11
Glucocorticoid receptor-like (DNA-binding domain) AN1-like Zinc finger 11
Ubiquitin-like Acid proteases 11
TPR-like RING/U-box 11
Trypsin-like serine proteases PDZ domain-like 11
ARM repeat "Winged helix" DNA-binding domain 11
Dcp2 domain-like Nudix 11
Cysteine proteinases Protein kinase-like (PK-like) 11
YbaK/ProRS associated domain C-terminal domain of ProRS 11
Trypsin-like serine proteases P-loop containing nucleoside triphosphate hydrolases 11
Cap-Gly domain RNI-like 11
FF domain FF domain 11
SET domain Ankyrin repeat 11
PreATP-grasp domain Rudiment single hybrid motif 11
Actin depolymerizing proteins Actin depolymerizing proteins 11
Eukaryotic RPB5 N-terminal domain RPB5-like RNA polymerase subunit 11
SRCR-like SRCR-like 11
RNA-binding domain, RBD PABC (PABP) domain 11
RING/U-box WD40 repeat-like 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
Protein prenylyltransferase L domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
RING/U-box Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
RNI-like Ubiquitin-like 11
DPP6 N-terminal domain-like GYF domain 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
TPR-like Activator of Hsp90 ATPase, Aha1 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Nucleotide-binding domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
TPR-like ARM repeat 11
TATA-box binding protein-like DNA-glycosylase 11
Formate/glycerate dehydrogenase catalytic domain-like Formate/glycerate dehydrogenase catalytic domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Class I glutamine amidotransferase-like ADC synthase 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
GST C-terminal domain-like eEF1-gamma domain 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) Retrovirus zinc finger-like domains 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Cysteine proteinases UBA-like 11
EF-hand C2 domain (Calcium/lipid-binding domain, CaLB) 11
Trimeric LpxA-like enzymes MFS general substrate transporter 11
Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Galactose-binding domain-like ARM repeat 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Kringle-like TNF receptor-like 11
PDZ domain-like P-loop containing nucleoside triphosphate hydrolases 11
Staphylococcal nuclease Staphylococcal nuclease 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
DNA primase core DNA/RNA polymerases 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Formyltransferase FMT C-terminal domain-like 11
GST C-terminal domain-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
LCCL domain LCCL domain 11
PLP-binding barrel Alanine racemase C-terminal domain-like 11
Outer arm dynein light chain 1 L domain-like 11
Alpha subunit of glutamate synthase, C-terminal domain Nucleotide-binding domain 11
DNA primase core Ribonuclease H-like 11
Ribonuclease H-like HRDC-like 11
Smc hinge domain Tropomyosin 11
S-adenosylmethionine decarboxylase Alanine racemase C-terminal domain-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Protein kinase-like (PK-like) Ypt/Rab-GAP domain of gyp1p 11
PLC-like phosphodiesterases C2 domain (Calcium/lipid-binding domain, CaLB) 11
SSo0622-like S-adenosyl-L-methionine-dependent methyltransferases 11
PUA domain-like eIF1-like 11
EF-hand PLC-like phosphodiesterases 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
SNARE-like P-loop containing nucleoside triphosphate hydrolases 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Zinc beta-ribbon 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Glucocorticoid receptor-like (DNA-binding domain) RING/U-box 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Dihydropteroate synthetase-like 11
Putative DNA-binding domain PheT/TilS domain 11
TRAF domain-like Pseudouridine synthase 11
UBA-like XPC-binding domain 11
Ribosomal L27 protein-like Eukaryotic type KH-domain (KH-domain type I) 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) Concanavalin A-like lectins/glucanases 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
ISP transmembrane anchor ISP domain 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
Class I glutamine amidotransferase-like Methylglyoxal synthase-like 11
Activator of Hsp90 ATPase, Aha1 Activator of Hsp90 ATPase, Aha1 11
RNA-binding domain, RBD Tricorn protease domain 2 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Elongation factor TFIIS domain 2 Zinc beta-ribbon 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 11
Ankyrin repeat Bromodomain 11
Ankyrin repeat S-adenosyl-L-methionine-dependent methyltransferases 11
YbaK/ProRS associated domain Class II aaRS and biotin synthetases 11
Thioredoxin-like eEF1-gamma domain 11
WW domain WW domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal nucleophile aminohydrolases (Ntn hydrolases) 11
PreATP-grasp domain ClpP/crotonase 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Translation proteins Translation proteins 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
cAMP-binding domain-like Protein kinase-like (PK-like) 11
Zinc beta-ribbon Zinc beta-ribbon 11
Cysteine-rich domain NAD kinase/diacylglycerol kinase-like 11
FAD-linked reductases, C-terminal domain FYVE/PHD zinc finger 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Taf5 N-terminal domain-like WD40 repeat-like 11
Alpha subunit of glutamate synthase, C-terminal domain alpha-helical ferredoxin 11
SWIB/MDM2 domain eIF1-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Pentapeptide repeat-like FYVE/PHD zinc finger 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Metalloproteases ("zincins"), catalytic domain 4'-phosphopantetheinyl transferase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Cyclin-like P-loop containing nucleoside triphosphate hydrolases 11
Ran binding protein zinc finger-like RNA-binding domain, RBD 11
Tropomyosin Tropomyosin 11
Kringle-like Growth factor receptor domain 11
PRTase-like PRTase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
UBC-like Protein kinase-like (PK-like) 11
Ricin B-like lectins Fibrinogen C-terminal domain-like 11
Folate-binding domain Folate-binding domain 11
Pre-PUA domain PUA domain-like 11
ThrRS/AlaRS common domain ThrRS/AlaRS common domain 11
Rudiment single hybrid motif Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases Concanavalin A-like lectins/glucanases 11
FYVE/PHD zinc finger Bromodomain 11
PUG domain-like UBC-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Chromo domain-like Chromo domain-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
ThrRS/AlaRS common domain Nucleotidylyl transferase 11
HMG-box Histone-fold 11
CCCH zinc finger RING/U-box 11
Class II aaRS and biotin synthetases SufE/NifU 11
WD40 repeat-like DPP6 N-terminal domain-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
PH domain-like BEACH domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Cullin homology domain Cullin homology domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Acetyl-CoA synthetase-like Thiamin diphosphate-binding fold (THDP-binding) 11
Thioredoxin-like FAD-dependent thiol oxidase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
FYVE/PHD zinc finger P-loop containing nucleoside triphosphate hydrolases 11
SSo0622-like Galactose oxidase, central domain 11
Growth factor receptor domain Concanavalin A-like lectins/glucanases 11
NagB/RpiA/CoA transferase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
VC0467-like VC0467-like 11
PUA domain-like SET domain 11
Pentapeptide repeat-like "Winged helix" DNA-binding domain 11
vWA-like Cysteine-rich domain 11
Dihydrofolate reductase-like Thymidylate synthase/dCMP hydroxymethylase 11
FumA C-terminal domain-like FumA C-terminal domain-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
TPR-like PDZ domain-like 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
Dom34/Pelota N-terminal domain-like Translational machinery components 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Translation proteins ThrRS/AlaRS common domain 11
Creatinase/aminopeptidase Creatinase/aminopeptidase 11
Alpha-hemoglobin stabilizing protein AHSP Bet v1-like 11
PX domain WD40 repeat-like 11
Clathrin heavy-chain terminal domain ARM repeat 11
Dom34/Pelota N-terminal domain-like L30e-like 11
ISP domain FAD/NAD(P)-binding domain 11
beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 11
Acyl-CoA binding protein Ankyrin repeat 11
Chromo domain-like Acyl-CoA N-acyltransferases (Nat) 11
Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 11
Apolipoprotein A-I Apolipoprotein A-I 11
P-loop containing nucleoside triphosphate hydrolases DNA/RNA polymerases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain PreATP-grasp domain 11
alpha-helical ferredoxin FAD/NAD(P)-binding domain 11
ARM repeat Hect, E3 ligase catalytic domain 11
Cysteine proteinases Calpain large subunit, middle domain (domain III) 11
HIT/MYND zinc finger-like SET domain 11
SNARE fusion complex SNARE fusion complex 11
Nucleic acid-binding proteins WWE domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Putative DNA-binding domain Putative DNA-binding domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
DNase I-like DNase I-like 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Homeodomain-like CHY zinc finger-like 11
Ubiquitin-like Ubiquitin-like 11
Kelch motif P-loop containing nucleoside triphosphate hydrolases 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
BRCT domain post-AAA+ oligomerization domain-like 11
tRNA-binding arm Class II aaRS and biotin synthetases 11
Ubiquitin-like Cysteine proteinases 11
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment DNA breaking-rejoining enzymes 11
Growth factor receptor domain TNF receptor-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Galactose oxidase, central domain Metallo-dependent phosphatases 11
GST C-terminal domain-like Ribosomal protein L25-like 11
GST C-terminal domain-like eEF-1beta-like 11
HMG-box HMG-box 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PurM N-terminal domain-like PurM C-terminal domain-like 11
L domain-like L domain-like 11
RING/U-box Cyclophilin-like 11
Acetyl-CoA synthetase-like DHS-like NAD/FAD-binding domain 11
RNA-binding domain, RBD PWI domain 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
DUSP-like Cysteine proteinases 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
ARM repeat ENTH/VHS domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Kelch motif ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
PUA domain-like SWIB/MDM2 domain 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
Single hybrid motif Single hybrid motif 11
DHS-like NAD/FAD-binding domain Formate/glycerate dehydrogenase catalytic domain-like 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
TPR-like Chaperone J-domain 11
Class I glutamine amidotransferase-like Carbamoyl phosphate synthetase, large subunit connection domain 11
CBS-domain pair cAMP-binding domain-like 11
FYSH domain Hypothetical protein AF0491, middle domain 11
SRCR-like Concanavalin A-like lectins/glucanases 11
RING/U-box UBA-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) alpha-helical ferredoxin 11
FAD/NAD(P)-binding domain FYVE/PHD zinc finger 11
PH domain-like Oxysterol-binding protein-like 11
Chaperone J-domain Sec63 N-terminal domain-like 11
YbiA-like SMAD/FHA domain 11

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