SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Hippea maritima DSM 10411

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

471 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 85
Actin-like ATPase domain Actin-like ATPase domain 82
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 87
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 82
P-loop containing nucleoside triphosphate hydrolases Translation proteins 74
ACT-like ACT-like 74
Homeodomain-like Ribonuclease H-like 71
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 72
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 76
HD-domain/PDEase-like Nucleotide cyclase 64
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
PYP-like sensor domain (PAS domain) Nucleotide cyclase 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 52
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 53
GAF domain-like Nucleotide cyclase 55
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 44
Translation proteins EF-G C-terminal domain-like 42
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 43
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 43
PYP-like sensor domain (PAS domain) EAL domain-like 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 42
PreATP-grasp domain Rudiment single hybrid motif 43
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 43
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Nucleotidyltransferase Poly A polymerase C-terminal region-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
GAF domain-like HD-domain/PDEase-like 33
Clc chloride channel CBS-domain pair 31
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
DHH phosphoesterases CBS-domain pair 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Nucleotide cyclase EAL domain-like 33
TPR-like TPR-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleic acid-binding proteins RuvA domain 2-like 22
Calcium ATPase, transmembrane domain M HAD-like 22
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Hedgehog/intein (Hint) domain Homing endonucleases 22
GAF domain-like GAF domain-like 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 21
GAF domain-like EAL domain-like 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 22
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
CheY-like C-terminal effector domain of the bipartite response regulators 21
Calcium ATPase, transduction domain A HAD-like 22
HprK N-terminal domain-like CBS-domain pair 21
Transposase IS200-like TrpR-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
PLP-binding barrel Alanine racemase C-terminal domain-like 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 21
GAF domain-like PYP-like sensor domain (PAS domain) 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Flagellar hook protein flgE Flagellar hook protein flgE 22
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Thiolase-like Thiolase-like 21
HprK N-terminal domain-like DHH phosphoesterases 21
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
CheC-like Surface presentation of antigens (SPOA) 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 22
Nucleotidyltransferase ACT-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
CheW-like CheY-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Rudiment single hybrid motif Single hybrid motif 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
HD-domain/PDEase-like TGS-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
YrdC/RibB Actin-like ATPase domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
DHH phosphoesterases Poly A polymerase C-terminal region-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Homing endonucleases P-loop containing nucleoside triphosphate hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
RuvA domain 2-like BRCT domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
CBS-domain pair MgtE membrane domain-like 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Fibronectin type III Fibronectin type III 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
DHH phosphoesterases Nucleotidyltransferase 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Serine metabolism enzymes domain ACT-like 11
Nucleic acid-binding proteins BRCT domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
PreATP-grasp domain Aldolase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Trypsin-like serine proteases PDZ domain-like 11
PreATP-grasp domain Single hybrid motif 11
Ferritin-like Rubredoxin-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
TGS-like ACT-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Aldolase Single hybrid motif 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Purine and uridine phosphorylases Radical SAM enzymes 11
S-adenosyl-L-methionine-dependent methyltransferases PreATP-grasp domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Carbamate kinase-like PUA domain-like 11
post-HMGL domain-like Single hybrid motif 11
ACT-like 4Fe-4S ferredoxins 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
CheY-like Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
CheY-like PYP-like sensor domain (PAS domain) 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Chorismate mutase II Periplasmic binding protein-like II 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Formyltransferase FMT C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
CheY-like CheY-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
HD-domain/PDEase-like ACT-like 11
Poly A polymerase C-terminal region-like ACT-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
E set domains Glycosyl hydrolase domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
(Trans)glycosidases Glycosyl hydrolase domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
DNA repair protein MutS, domain III SMR domain-like 11
Barwin-like endoglucanases Sporulation related repeat 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Hedgehog/intein (Hint) domain PFL-like glycyl radical enzymes 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Pectin lyase-like Concanavalin A-like lectins/glucanases 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
HisI-like all-alpha NTP pyrophosphatases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain GAF domain-like 11
ClpP/crotonase ClpP/crotonase 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Chorismate mutase II ACT-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Nucleotidylyl transferase Riboflavin kinase-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like "Winged helix" DNA-binding domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
PreATP-grasp domain PreATP-grasp domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Trimeric LpxA-like enzymes Phosphoglucomutase, first 3 domains 11
FMN-binding split barrel UbiD C-terminal domain-like 11
PFL-like glycyl radical enzymes Homing endonucleases 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
DNA methylase specificity domain DNA methylase specificity domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
BAR/IMD domain-like Nucleotide cyclase 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
Periplasmic binding protein-like II ACT-like 11
Translation proteins ThrRS/AlaRS common domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PDZ domain-like ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
LysM domain Cysteine proteinases 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
CBS-domain pair Poly A polymerase C-terminal region-like 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
GroEL-intermediate domain like GroEL apical domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
4Fe-4S ferredoxins Radical SAM enzymes 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Chaperone J-domain TPR-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
OmpA-like Anthrax protective antigen 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
EAL domain-like HD-domain/PDEase-like 11
Nucleic acid-binding proteins GAD domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
CheY-like Methylesterase CheB, C-terminal domain 11
Carbamate kinase-like ACT-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
DNA clamp DNA clamp 11
PFL-like glycyl radical enzymes PFL-like glycyl radical enzymes 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
2Fe-2S ferredoxin-like ADC-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
E set domains (Trans)glycosidases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Rudiment single hybrid motif post-HMGL domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
PreATP-grasp domain post-HMGL domain-like 11
L-aspartase-like Nudix 11
FMN-binding split barrel Rubredoxin-like 11
FliG FliG 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Hedgehog/intein (Hint) domain P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
PheT/TilS domain Putative DNA-binding domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nucleotidyltransferase TGS-like 11
4Fe-4S ferredoxins FMN-linked oxidoreductases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Rubredoxin-like Superoxide reductase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Aldolase AFP III-like domain 11
PIN domain-like DNA/RNA polymerases 11
4Fe-4S ferredoxins ADC-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
CBS-domain pair Nucleotidyltransferase 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, first 3 domains 11
Nucleic acid-binding proteins PheT/TilS domain 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Nitrogenase accessory factor-like S-adenosyl-L-methionine-dependent methyltransferases 11
GAF domain-like Homeodomain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Acid phosphatase/Vanadium-dependent haloperoxidase (Phosphotyrosine protein) phosphatases II 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
S-adenosyl-L-methionine-dependent methyltransferases Glutathione synthetase ATP-binding domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Zinc beta-ribbon DNA primase core 11
Zinc beta-ribbon Zinc beta-ribbon 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
YrdC/RibB RibA-like 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidylyl transferase tRNA-binding arm 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
PDZ domain-like PDZ domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Ribosomal protein L6 Ribosomal protein L6 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Aldolase post-HMGL domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
CarD-like TRCF domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
GIY-YIG endonuclease RuvA domain 2-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
HIT-like HIT-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Translation proteins Translation proteins 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
RNase III domain-like dsRNA-binding domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Rudiment single hybrid motif Aldolase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
LysM domain LysM domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Phase 1 flagellin Phase 1 flagellin 11
SIS domain CBS-domain pair 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Ribonuclease H-like Adenine nucleotide alpha hydrolases-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases Translation proteins 11
GroEL equatorial domain-like GroEL apical domain-like 11
Homodimeric domain of signal transducing histidine kinase CheY-like 11
CheY-like EAL domain-like 11

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