SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Entamoeba histolytica 1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

608 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Actin-like ATPase domain Actin-like ATPase domain 7312
Growth factor receptor domain Growth factor receptor domain 6836
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 6322
Growth factor receptor domain Protein kinase-like (PK-like) 5423
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 438
L domain-like L domain-like 4116
Ypt/Rab-GAP domain of gyp1p Ypt/Rab-GAP domain of gyp1p 376
DBL homology domain (DH-domain) PH domain-like 2915
RNA-binding domain, RBD RNA-binding domain, RBD 2712
PH domain-like Protein kinase-like (PK-like) 2410
ARM repeat ARM repeat 2113
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 198
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 185
TPR-like TPR-like 189
Calcium ATPase, transmembrane domain M Metal cation-transporting ATPase, ATP-binding domain N 184
HAD-like Calcium ATPase, transmembrane domain M 184
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 173
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 163
Calcium ATPase, transduction domain A HAD-like 163
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 163
Protein kinase-like (PK-like) ARM repeat 159
RING/U-box RING/U-box 159
BAR/IMD domain-like SH3-domain 142
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 143
P-loop containing nucleoside triphosphate hydrolases Translation proteins 137
SMAD/FHA domain Protein kinase-like (PK-like) 132
L domain-like (Phosphotyrosine protein) phosphatases II 138
GroEL equatorial domain-like GroEL-intermediate domain like 134
GroEL-intermediate domain like GroEL apical domain-like 134
GroEL equatorial domain-like GroEL apical domain-like 134
Nucleic acid-binding proteins Nucleic acid-binding proteins 138
DBL homology domain (DH-domain) FYVE/PHD zinc finger 125
ABC transporter transmembrane region ABC transporter transmembrane region 123
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 124
PH domain-like FYVE/PHD zinc finger 114
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 112
Thioredoxin-like Thioredoxin-like 116
C2 domain (Calcium/lipid-binding domain, CaLB) Protein kinase-like (PK-like) 103
ARM repeat Clathrin adaptor appendage domain 106
L domain-like PP2C-like 94
Cyclin-like Cyclin-like 95
Cullin homology domain "Winged helix" DNA-binding domain 92
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 95
L domain-like Protein kinase-like (PK-like) 95
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 95
PH domain-like PH domain-like 98
(Phosphotyrosine protein) phosphatases II Protein kinase-like (PK-like) 95
Ribonuclease H-like DNA/RNA polymerases 91
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 93
C2 domain (Calcium/lipid-binding domain, CaLB) ARM repeat 82
ARM repeat Formin homology 2 domain (FH2 domain) 84
Ankyrin repeat FabD/lysophospholipase-like 82
WD40 repeat-like WD40 repeat-like 85
EF-hand EF-hand 85
Chaperone J-domain HSP40/DnaJ peptide-binding domain 84
PH domain-like GTPase activation domain, GAP 85
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 76
Nucleic acid-binding proteins Translation proteins SH3-like domain 72
Cullin repeat-like Cullin homology domain 71
PH domain-like Calponin-homology domain, CH-domain 75
beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 75
PH domain-like (Phosphotyrosine protein) phosphatases II 74
Cullin repeat-like "Winged helix" DNA-binding domain 71
beta-sandwich domain of Sec23/24 Zn-finger domain of Sec23/24 76
Concanavalin A-like lectins/glucanases BEACH domain 75
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 74
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 74
Actin depolymerizing proteins Actin depolymerizing proteins 76
Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) 65
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 64
SH3-domain SH3-domain 66
Ankyrin repeat Ypt/Rab-GAP domain of gyp1p 63
Pre-PUA domain PUA domain-like 61
(Trans)glycosidases Glycosyl hydrolase domain 63
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 64
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 64
Zn-finger domain of Sec23/24 vWA-like 65
RNA-binding domain, RBD Retrovirus zinc finger-like domains 65
P-loop containing nucleoside triphosphate hydrolases dUTPase-like 61
beta-sandwich domain of Sec23/24 vWA-like 65
Calponin-homology domain, CH-domain DBL homology domain (DH-domain) 64
Ankyrin repeat Protein kinase-like (PK-like) 63
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
PH domain-like ArfGap/RecO-like zinc finger 64
Cysteine-rich domain NAD kinase/diacylglycerol kinase-like 64
Cysteine-rich domain Cysteine-rich domain 64
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 62
Actin depolymerizing proteins VHP, Villin headpiece domain 65
SNARE-like SNARE fusion complex 62
POZ domain Skp1 dimerisation domain-like 61
Translation proteins EF-G C-terminal domain-like 64
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 62
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 62
EF-G C-terminal domain-like EF-G C-terminal domain-like 64
Translation proteins Ribosomal protein S5 domain 2-like 64
Calponin-homology domain, CH-domain ArfGap/RecO-like zinc finger 53
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 51
Homeodomain-like Homeodomain-like 55
RNI-like RNI-like 54
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 51
Metallo-hydrolase/oxidoreductase SCP-like 51
Ubiquitin-like Protein kinase-like (PK-like) 51
Metallo-hydrolase/oxidoreductase Flavoproteins 51
Thiolase-like Thiolase-like 51
Ubiquitin-like C2 domain (Calcium/lipid-binding domain, CaLB) 51
Sec7 domain ARM repeat 54
SNARE-like Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 52
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
F-box domain WD40 repeat-like 51
E set domains E set domains 55
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 52
PH domain-like BEACH domain 55
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 51
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 53
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 53
ARM repeat DBL homology domain (DH-domain) 53
DBL homology domain (DH-domain) ArfGap/RecO-like zinc finger 53
BEACH domain WD40 repeat-like 54
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 52
Ubiquitin-like ARM repeat 51
Chromo domain-like P-loop containing nucleoside triphosphate hydrolases 43
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 42
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 42
PapD-like Protein kinase-like (PK-like) 42
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 42
vWA-like Helical domain of Sec23/24 43
Ankyrin repeat Rap/Ran-GAP 42
WD40 repeat-like Cysteine-rich domain 42
WD40 repeat-like PH domain-like 44
ARM repeat WD40 repeat-like 43
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
EF-hand P-loop containing nucleoside triphosphate hydrolases 42
Concanavalin A-like lectins/glucanases WD40 repeat-like 43
Zn-finger domain of Sec23/24 Helical domain of Sec23/24 43
Acetyl-CoA synthetase-like ACP-like 42
DBL homology domain (DH-domain) GTPase activation domain, GAP 44
beta-sandwich domain of Sec23/24 Helical domain of Sec23/24 43
Barwin-like endoglucanases Galactose-binding domain-like 43
Protein kinase-like (PK-like) SH2 domain 42
Ubiquitin-like UBA-like 43
ACP-like NAD(P)-binding Rossmann-fold domains 42
E set domains Protein kinase-like (PK-like) 41
Ypt/Rab-GAP domain of gyp1p Rhodanese/Cell cycle control phosphatase 41
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 42
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 43
Ankyrin repeat Ankyrin repeat 44
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 43
FKBP-like TPR-like 41
Nucleic acid-binding proteins TPR-like 43
HCP-like HCP-like 44
BRCT domain BRCT domain 43
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 42
ADC-like Cdc48 domain 2-like 31
ARM repeat PH domain-like 33
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 33
GTPase activation domain, GAP WD40 repeat-like 31
Thioredoxin-like ERP29 C domain-like 31
DPP6 N-terminal domain-like alpha/beta-Hydrolases 31
Galactose mutarotase-like Glycosyl hydrolase domain 31
Outer arm dynein light chain 1 (Phosphotyrosine protein) phosphatases II 32
ARM repeat Subdomain of clathrin and coatomer appendage domain 32
ALDH-like Dehydroquinate synthase-like 31
GroES-like NAD(P)-binding Rossmann-fold domains 31
ADC-like P-loop containing nucleoside triphosphate hydrolases 31
P-loop containing nucleoside triphosphate hydrolases TGS-like 31
PAZ domain Ribonuclease H-like 32
WW domain C2 domain (Calcium/lipid-binding domain, CaLB) 32
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
PH domain-like L domain-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Retrovirus zinc finger-like domains Retrovirus zinc finger-like domains 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 31
Zn-finger domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
4Fe-4S ferredoxins Fe-only hydrogenase 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
RING/U-box UBA-like 33
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 33
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 31
RCC1/BLIP-II Ras GEF 32
CCCH zinc finger CCCH zinc finger 33
Galactose mutarotase-like (Trans)glycosidases 31
WWE domain BRCT domain 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 33
Calponin-homology domain, CH-domain EF-hand 32
Sec63 N-terminal domain-like E set domains 33
Phospholipase D/nuclease Phospholipase D/nuclease 32
beta-sandwich domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 32
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 31
UBA-like UBA-like 33
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 32
GTPase activation domain, GAP Cysteine-rich domain 31
Concanavalin A-like lectins/glucanases PH domain-like 33
L domain-like NTF2-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
(Phosphotyrosine protein) phosphatases II C2 domain (Calcium/lipid-binding domain, CaLB) 31
Ras GEF GTPase activation domain, GAP 31
C2 domain (Calcium/lipid-binding domain, CaLB) C2 domain (Calcium/lipid-binding domain, CaLB) 32
GTPase activation domain, GAP RNI-like 32
TATA-box binding protein-like TATA-box binding protein-like 32
vWA-like C-terminal, gelsolin-like domain of Sec23/24 32
Clathrin adaptor appendage domain Subdomain of clathrin and coatomer appendage domain 32
alpha-helical ferredoxin Nucleotide-binding domain 32
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 31
GINS helical bundle-like PriA/YqbF domain 32
Helical domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 32
PHL pollen allergen Galactose-binding domain-like 32
Barwin-like endoglucanases PHL pollen allergen 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 31
ArfGap/RecO-like zinc finger Ankyrin repeat 32
GTPase activation domain, GAP Ankyrin repeat 22
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 22
ARM repeat BEACH domain 22
PH domain-like I/LWEQ domain 21
ARM repeat Concanavalin A-like lectins/glucanases 22
GTPase activation domain, GAP L domain-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 21
GTPase activation domain, GAP Protein kinase-like (PK-like) 22
Mib/herc2 domain-like Mib/herc2 domain-like 21
E set domains Integrin alpha N-terminal domain 21
Clc chloride channel CBS-domain pair 21
GTPase activation domain, GAP (Phosphotyrosine protein) phosphatases II 22
"Winged helix" DNA-binding domain RNA-binding domain, RBD 21
ARM repeat Rap/Ran-GAP 21
Second domain of FERM PH domain-like 21
Ricin B-like lectins RPA2825-like 21
PLP-dependent transferases PLP-dependent transferases 21
E set domains (Trans)glycosidases 21
RING/U-box Cysteine proteinases 22
UBC-like ADP-ribosylation 21
Nucleic acid-binding proteins Eukaryotic type KH-domain (KH-domain type I) 22
F-box domain RNI-like 22
Porins Porins 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
FAD/NAD(P)-binding domain CPE0013-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
ARM repeat FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 22
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 21
DHS-like NAD/FAD-binding domain Formate/glycerate dehydrogenase catalytic domain-like 21
Second domain of FERM I/LWEQ domain 21
Protein kinase-like (PK-like) SH3-domain 22
DBL homology domain (DH-domain) Ras GEF 21
Protein kinase-like (PK-like) HCP-like 22
L domain-like VHP, Villin headpiece domain 21
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
Calponin-homology domain, CH-domain E set domains 22
BAG domain HSP20-like chaperones 21
Dcp2 domain-like Nudix 21
RING/U-box B-box zinc-binding domain 22
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 22
WD40 repeat-like Tricorn protease domain 2 22
Zinc beta-ribbon Cyclin-like 22
Nucleotidylyl transferase Nucleotidylyl transferase 21
PX domain Protein kinase-like (PK-like) 21
E set domains C2 domain (Calcium/lipid-binding domain, CaLB) 21
ENTH/VHS domain I/LWEQ domain 22
FYSH domain Hypothetical protein AF0491, middle domain 22
FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) Protein kinase-like (PK-like) 22
RNA-binding domain, RBD PABC (PABP) domain 21
Rad51 N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
Chromo domain-like Chromo domain-like 21
PX domain PH domain-like 21
Calpain large subunit, middle domain (domain III) Calpain large subunit, middle domain (domain III) 22
Kelch motif Protein kinase-like (PK-like) 21
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 22
Ribonuclease H-like HRDC-like 22
"Winged helix" DNA-binding domain Sec63 N-terminal domain-like 22
Staphylococcal nuclease Staphylococcal nuclease 22
RCC1/BLIP-II DBL homology domain (DH-domain) 21
PRTase-like PRTase-like 21
PH domain-like SH3-domain 22
E set domains Glycosyl hydrolase domain 21
Clathrin heavy-chain terminal domain ARM repeat 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
DBL homology domain (DH-domain) DBL homology domain (DH-domain) 22
Translational machinery components L30e-like 22
Galactose-binding domain-like (Trans)glycosidases 22
Chaperone J-domain ARM repeat 22
Nucleotidylyl transferase Ribosomal protein L25-like 22
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 21
Calponin-homology domain, CH-domain Glucocorticoid receptor-like (DNA-binding domain) 22
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 22
Tropomyosin Myosin rod fragments 22
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
DNase I-like GTPase activation domain, GAP 22
Ribosomal protein L6 Ribosomal protein L6 21
Metallo-dependent hydrolases Metallo-dependent hydrolases 21
TPR-like Metallo-dependent phosphatases 21
E set domains WW domain 21
Pectin lyase-like Pectin lyase-like 22
Arp2/3 complex subunits Arp2/3 complex subunits 21
L domain-like Actin depolymerizing proteins 21
C2 domain (Calcium/lipid-binding domain, CaLB) Rap/Ran-GAP 22
alpha/beta-Hydrolases SAM/Pointed domain 22
Starch-binding domain-like (Trans)glycosidases 22
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 21
DHS-like NAD/FAD-binding domain NAD(P)-binding Rossmann-fold domains 21
Concanavalin A-like lectins/glucanases RING/U-box 11
PH domain-like VHP, Villin headpiece domain 11
Quinoprotein alcohol dehydrogenase-like NHL repeat 11
Glucocorticoid receptor-like (DNA-binding domain) C2 domain (Calcium/lipid-binding domain, CaLB) 11
FYVE/PHD zinc finger E set domains 11
Domain of poly(ADP-ribose) polymerase ADP-ribosylation 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Thioredoxin-like Ubiquitin-like 11
Concanavalin A-like lectins/glucanases P-domain of calnexin/calreticulin 11
Ubiquitin-like Cysteine proteinases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Protein kinase-like (PK-like) Polo-box domain 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
RING/U-box F-box domain 11
Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 11
NTF2-like UBA-like 11
SAICAR synthase-like SAICAR synthase-like 11
Dom34/Pelota N-terminal domain-like L30e-like 11
ARM repeat Quinoprotein alcohol dehydrogenase-like 11
RING/U-box Ras GEF 11
B-box zinc-binding domain NHL repeat 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Eukaryotic RPB5 N-terminal domain RPB5-like RNA polymerase subunit 11
(Trans)glycosidases Chitinase insertion domain 11
Spectrin repeat EF-hand 11
Chaperone J-domain Homeodomain-like 11
ClpP/crotonase Single hybrid motif 11
DBL homology domain (DH-domain) Glucocorticoid receptor-like (DNA-binding domain) 11
EPT/RTPC-like EPT/RTPC-like 11
Calponin-homology domain, CH-domain VHP, Villin headpiece domain 11
L domain-like Outer arm dynein light chain 1 11
Glucocorticoid receptor-like (DNA-binding domain) ADP-ribosylation 11
ARM repeat HIT/MYND zinc finger-like 11
Agglutinin HPA-like Rap/Ran-GAP 11
Regulator of G-protein signaling, RGS DBL homology domain (DH-domain) 11
BRCT domain DNA/RNA polymerases 11
Cytidine deaminase-like Cytidine deaminase-like 11
DNA clamp DNA clamp 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
(Trans)glycosidases (Trans)glycosidases 11
Ribonuclease H-like Ribonuclease H-like 11
RING/U-box ADP-ribosylation 11
Calponin-homology domain, CH-domain Spectrin repeat 11
NSFL1 (p97 ATPase) cofactor p47, SEP domain Ubiquitin-like 11
Transducin (alpha subunit), insertion domain P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
RING/U-box Homeodomain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
MFS general substrate transporter Multidrug resistance efflux transporter EmrE 11
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Putative DNA-binding domain Putative DNA-binding domain 11
FYVE/PHD zinc finger FYVE/PHD zinc finger 11
Nucleic acid-binding proteins eIF2alpha middle domain-like 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
ARM repeat P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Translation proteins 11
Ubiquitin-like Ubiquitin-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Restriction endonuclease-like RuvA domain 2-like 11
RING/U-box TRAF domain-like 11
Chaperone J-domain L domain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
UBC-like Ribosomal protein S5 domain 2-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Initiation factor IF2/eIF5b, domain 3 Translation proteins 11
tRNA-binding arm Class II aaRS and biotin synthetases 11
BRCT domain Lesion bypass DNA polymerase (Y-family), little finger domain 11
Tropomyosin Tropomyosin 11
GTPase activation domain, GAP CRAL/TRIO domain 11
Actin depolymerizing proteins SH3-domain 11
ClpP/crotonase Aldolase 11
PLP-binding barrel Alanine racemase C-terminal domain-like 11
RNA-binding domain, RBD alpha/beta knot 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III alpha-helical ferredoxin 11
SMAD/FHA domain RING/U-box 11
WD40 repeat-like RING/U-box 11
P-loop containing nucleoside triphosphate hydrolases Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Ribosomal L27 protein-like Eukaryotic type KH-domain (KH-domain type I) 11
WD40 repeat-like Sec1/munc18-like (SM) proteins 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
EF-hand Protein kinase-like (PK-like) 11
Glucocorticoid receptor-like (DNA-binding domain) PH domain-like 11
Calponin-homology domain, CH-domain HCP-like 11
Calponin-homology domain, CH-domain C2 domain (Calcium/lipid-binding domain, CaLB) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
BAR/IMD domain-like Ankyrin repeat 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) LigT-like 11
ClpP/crotonase ClpP/crotonase 11
Actin-like ATPase domain TPR-like 11
CCCH zinc finger RING/U-box 11
ENTH/VHS domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
TK C-terminal domain-like alpha-helical ferredoxin 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
4Fe-4S ferredoxins FMN-dependent nitroreductase-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Roadblock/LC7 domain Glycerol-3-phosphate (1)-acyltransferase 11
Pectin lyase-like Growth factor receptor domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases E set domains 11
PH domain-like Ankyrin repeat 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Aldolase Single hybrid motif 11
Starch-binding domain-like Starch-binding domain-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
WD40 repeat-like Actin depolymerizing proteins 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Tricorn protease domain 2 Cysteine-rich domain 11
Spectrin repeat Spectrin repeat 11
Protein kinase-like (PK-like) Calpain large subunit, middle domain (domain III) 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
FF domain FF domain 11
alpha-helical ferredoxin FMN-linked oxidoreductases 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 11
GTPase activation domain, GAP Ubiquitin-like 11
PRP4-like WD40 repeat-like 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
mRNA decapping enzyme DcpS N-terminal domain HIT-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 11
FYVE/PHD zinc finger ARM repeat 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
RNI-like WD40 repeat-like 11
C2 domain (Calcium/lipid-binding domain, CaLB) PH domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Agglutinin HPA-like Ankyrin repeat 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Nucleotide-binding domain FMN-linked oxidoreductases 11
Clathrin adaptor appendage domain Clathrin adaptor appendage domain 11
BAR/IMD domain-like PH domain-like 11
Indigoidine synthase A-like Ribokinase-like 11
Ankyrin repeat SH3-domain 11
DUSP-like Cysteine proteinases 11
Second domain of FERM RNI-like 11
Cysteine proteinases Growth factor receptor domain 11
ClpP/crotonase post-HMGL domain-like 11
NagB/RpiA/CoA transferase-like LmbE-like 11
Nucleotide-diphospho-sugar transferases ARM repeat 11
Glucocorticoid receptor-like (DNA-binding domain) Domain of poly(ADP-ribose) polymerase 11
Sec63 N-terminal domain-like Sec63 N-terminal domain-like 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
WGR domain-like ADP-ribosylation 11
CCCH zinc finger ARM repeat 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
(Phosphotyrosine protein) phosphatases II Actin depolymerizing proteins 11
MIT domain Glucocorticoid receptor-like (DNA-binding domain) 11
WD40 repeat-like VHP, Villin headpiece domain 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
UBA-like Thioredoxin-like 11
WD40 repeat-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 11
Histone-fold ARM repeat 11
Quinoprotein alcohol dehydrogenase-like Protein kinase-like (PK-like) 11
SAICAR synthase-like Phosphoglycerate mutase-like 11
Zinc-binding domain of translation initiation factor 2 beta ARM repeat 11
GTPase activation domain, GAP EF-hand 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Sec7 domain HIT/MYND zinc finger-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Translation proteins ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases PH domain-like 11
Hypothetical protein AF0491, middle domain EF-G C-terminal domain-like 11
BAR/IMD domain-like ArfGap/RecO-like zinc finger 11
RING/U-box Calcium-dependent phosphotriesterase 11
Cysteine proteinases UBA-like 11
Ankyrin repeat Bromodomain 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases SH3-domain 11
Staphylococcal nuclease Tudor/PWWP/MBT 11
YbaK/ProRS associated domain DBL homology domain (DH-domain) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
vWA-like Cysteine-rich domain 11
WW domain ARM repeat 11
Quinoprotein alcohol dehydrogenase-like Tricorn protease domain 2 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Chromo domain-like Acyl-CoA N-acyltransferases (Nat) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
BRCT domain post-AAA+ oligomerization domain-like 11
BEACH domain Quinoprotein alcohol dehydrogenase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Purine and uridine phosphorylases RNA-binding domain, RBD 11
RING/U-box DHS-like NAD/FAD-binding domain 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
WD40 repeat-like BRCT domain 11
Aldolase post-HMGL domain-like 11
TPR-like "Winged helix" DNA-binding domain 11
Ribosomal L27 protein-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 11
Protein kinase-like (PK-like) Ypt/Rab-GAP domain of gyp1p 11
Chaperone J-domain Sec63 N-terminal domain-like 11
ENTH/VHS domain RNA-binding domain, RBD 11
B-box zinc-binding domain Calcium-dependent phosphotriesterase 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Dom34/Pelota N-terminal domain-like Translational machinery components 11
Elongation factor TFIIS domain 2 Zinc beta-ribbon 11
CYTH-like phosphatases DNA ligase/mRNA capping enzyme, catalytic domain 11
MIT domain P-loop containing nucleoside triphosphate hydrolases 11
Glucocorticoid receptor-like (DNA-binding domain) WGR domain-like 11
Pseudouridine synthase PUA domain-like 11
WD40 repeat-like Putative isomerase YbhE 11
PH domain-like Actin depolymerizing proteins 11
WWE domain WWE domain 11
P-loop containing nucleoside triphosphate hydrolases Myosin rod fragments 11
CYTH-like phosphatases Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Ubiquitin-like E set domains 11
Rhomboid-like UBA-like 11
WD40 repeat-like Bromodomain 11
WD40 repeat-like DPP6 N-terminal domain-like 11
Protein kinase-like (PK-like) WD40 repeat-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
"Winged helix" DNA-binding domain E set domains 11
3-carboxy-cis,cis-mucoante lactonizing enzyme Protein kinase-like (PK-like) 11
Pectin lyase-like Protein kinase-like (PK-like) 11
Methyl-accepting chemotaxis protein (MCP) signaling domain I/LWEQ domain 11
Ubiquitin-like XPC-binding domain 11
L domain-like UBA-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
MIT domain MIT domain 11
Cyclophilin-like RNA-binding domain, RBD 11
Chaperone J-domain beta-beta-alpha zinc fingers 11
Concanavalin A-like lectins/glucanases Growth factor receptor domain 11
WD40 repeat-like Quinoprotein alcohol dehydrogenase-like 11
Ankyrin repeat Trimeric LpxA-like enzymes 11
RING/U-box NHL repeat 11
Macro domain-like DHS-like NAD/FAD-binding domain 11
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase RNA-binding domain, RBD 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 11
RNA-binding domain, RBD Surp module (SWAP domain) 11
C2 domain (Calcium/lipid-binding domain, CaLB) EF-hand 11
Protein kinase-like (PK-like) N-terminal nucleophile aminohydrolases (Ntn hydrolases) 11
post-HMGL domain-like Single hybrid motif 11
"Winged helix" DNA-binding domain Protein kinase-like (PK-like) 11
FYSH domain EF-G C-terminal domain-like 11
Ferritin-like Rubredoxin-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
EF-hand ARM repeat 11
GTPase activation domain, GAP Glucocorticoid receptor-like (DNA-binding domain) 11
Concanavalin A-like lectins/glucanases Protein kinase-like (PK-like) 11
SNARE-like Domain of the SRP/SRP receptor G-proteins 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Myosin rod fragments Myosin rod fragments 11
ThrRS/AlaRS common domain P-loop containing nucleoside triphosphate hydrolases 11
(Trans)glycosidases Six-hairpin glycosidases 11
WGR domain-like Domain of poly(ADP-ribose) polymerase 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain ARM repeat 11
UBA-like XPC-binding domain 11
SNARE-like P-loop containing nucleoside triphosphate hydrolases 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
DBL homology domain (DH-domain) VHP, Villin headpiece domain 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 11
PIN domain-like RmlC-like cupins 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases beta-beta-alpha zinc fingers 11
POZ domain Bromodomain 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
VPS9 domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins 11
Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), beta-barrel domain 11
N-terminal domain of adenylylcyclase associated protein, CAP C-terminal domain of adenylylcyclase associated protein 11
BRCT domain P-loop containing nucleoside triphosphate hydrolases 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
vWA-like SPOC domain-like 11
Periplasmic binding protein-like I Protein kinase-like (PK-like) 11
Chaperone J-domain E set domains 11
Calponin-homology domain, CH-domain Tropomyosin 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
PUA domain-like Nucleotidylyl transferase 11
E set domains Actin-like ATPase domain 11
Lipovitellin-phosvitin complex, superhelical domain Sec7 domain 11
TPR-like SET domain 11
GTPase activation domain, GAP RGC domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) alpha-helical ferredoxin 11

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