SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Paenibacillus polymyxa M1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

797 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homeodomain-like Homeodomain-like 5410
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3615
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3212
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 294
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 291
CheY-like C-terminal effector domain of the bipartite response regulators 273
Regulatory protein AraC Homeodomain-like 265
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 242
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 242
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 235
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 211
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 214
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 2020
Acetyl-CoA synthetase-like ACP-like 2020
CoA-dependent acyltransferases ACP-like 2020
Actin-like ATPase domain Actin-like ATPase domain 195
ACP-like ACP-like 1919
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 184
CoA-dependent acyltransferases CoA-dependent acyltransferases 1717
CheY-like Homeodomain-like 174
(Trans)glycosidases Glycosyl hydrolase domain 158
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 1414
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 136
Galactose-binding domain-like (Trans)glycosidases 1111
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 103
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 104
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
Thiolase-like Thiolase-like 105
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 102
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 95
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 93
ACP-like Thiolase-like 99
GroES-like NAD(P)-binding Rossmann-fold domains 91
Glucose permease domain IIB Duplicated hybrid motif 82
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 84
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 85
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 86
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 84
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 75
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 76
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 71
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 73
ACP-like NAD(P)-binding Rossmann-fold domains 77
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 62
Acetyl-CoA synthetase-like Thiolase-like 66
HlyD-like secretion proteins HlyD-like secretion proteins 65
SacY-like RNA-binding domain PTS-regulatory domain, PRD 61
Homodimeric domain of signal transducing histidine kinase CheY-like 65
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 66
Thiolase-like CoA-dependent acyltransferases 66
PTS system IIB component-like Phoshotransferase/anion transport protein 65
"Winged helix" DNA-binding domain Chorismate lyase-like 61
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 64
Translation proteins EF-G C-terminal domain-like 54
Homeodomain-like Probable bacterial effector-binding domain 51
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 51
"Winged helix" DNA-binding domain PLP-dependent transferases 51
Thiolase-like NAD(P)-binding Rossmann-fold domains 55
Alpha-L RNA-binding motif Pseudouridine synthase 51
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 55
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 53
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 53
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 53
P-loop containing nucleoside triphosphate hydrolases MOP-like 51
Copper amine oxidase, domain N Copper amine oxidase, domain N 55
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
cAMP-binding domain-like "Winged helix" DNA-binding domain 51
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 53
Calcium ATPase, transduction domain A HAD-like 54
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 51
HAD-like Calcium ATPase, transmembrane domain M 54
"Winged helix" DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 55
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 54
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 52
HAMP domain-like PYP-like sensor domain (PAS domain) 42
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 44
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
RmlC-like cupins Homeodomain-like 41
PTS-regulatory domain, PRD PTS system IIB component-like 43
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 41
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 41
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
Fibronectin type III Fibronectin type III 43
Homeodomain-like "Helical backbone" metal receptor 42
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 43
Lysozyme-like beta-lactamase/transpeptidase-like 44
Trypsin-like serine proteases PDZ domain-like 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
S-adenosyl-L-methionine-dependent methyltransferases Thiolase-like 44
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Copper amine oxidase, domain N (Trans)glycosidases 42
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 41
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 44
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 44
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 44
Phospholipase D/nuclease Phospholipase D/nuclease 42
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 44
PreATP-grasp domain Rudiment single hybrid motif 41
CBS-domain pair FAD-binding/transporter-associated domain-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 41
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 43
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 44
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
Nucleotide-diphospho-sugar transferases TPR-like 43
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 41
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 31
Acetyl-CoA synthetase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 33
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 33
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 32
TPR-like C-terminal effector domain of the bipartite response regulators 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
ACT-like ACT-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
(Trans)glycosidases Class I glutamine amidotransferase-like 31
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 33
FabD/lysophospholipase-like CoA-dependent acyltransferases 33
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 33
Acetyl-CoA synthetase-like FabD/lysophospholipase-like 33
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
ACP-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Thiolase-like FabD/lysophospholipase-like 33
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
Nucleotide-diphospho-sugar transferases RmlC-like cupins 31
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Acetyl-CoA synthetase-like S-adenosyl-L-methionine-dependent methyltransferases 33
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
(Trans)glycosidases Fibronectin type III 33
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 33
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 33
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 31
Fibronectin type III Carbohydrate-binding domain 33
Sensory domain-like Sporulation response regulatory protein Spo0B 32
Single hybrid motif CoA-dependent acyltransferases 32
MalF N-terminal region-like MetI-like 31
Galactose-binding domain-like SGNH hydrolase 31
Probable ACP-binding domain of malonyl-CoA ACP transacylase CoA-dependent acyltransferases 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 33
"Winged helix" DNA-binding domain CBS-domain pair 32
CheY-like CheY-like 33
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 33
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 32
Homeodomain-like SIS domain 31
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
Galactose-binding domain-like Fibronectin type III 33
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 31
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
CoA-dependent acyltransferases S-adenosyl-L-methionine-dependent methyltransferases 33
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 33
tRNA-binding arm Class II aaRS and biotin synthetases 31
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 32
NAD(P)-binding Rossmann-fold domains ACT-like 33
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 32
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 33
lambda repressor-like DNA-binding domains RmlC-like cupins 31
ACP-like alpha/beta-Hydrolases 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Periplasmic binding protein-like II MetI-like 32
CoA-dependent acyltransferases alpha/beta-Hydrolases 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 33
ACP-like FabD/lysophospholipase-like 33
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
(Trans)glycosidases Carbohydrate-binding domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Phage tail proteins gp5 N-terminal domain-like 21
Glycosyl hydrolase domain Galactose-binding domain-like 22
Galactose mutarotase-like Six-hairpin glycosidases 21
Pectin lyase-like Pectin lyase-like 22
CheY-like "Winged helix" DNA-binding domain 22
CheY-like TPR-like 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Serine metabolism enzymes domain ACT-like 22
MFS general substrate transporter MFS general substrate transporter 21
Translation proteins ThrRS/AlaRS common domain 22
(Trans)glycosidases (Trans)glycosidases 22
ACP-like PLP-dependent transferases 22
CheC-like Surface presentation of antigens (SPOA) 22
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
Galactose-binding domain-like Homodimeric domain of signal transducing histidine kinase 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
"Winged helix" DNA-binding domain PTS system IIB component-like 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 21
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
"Winged helix" DNA-binding domain Actin-like ATPase domain 21
Outer membrane efflux proteins (OEP) HlyD-like secretion proteins 22
Homeodomain-like Ribonuclease H-like 21
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
lambda repressor-like DNA-binding domains TPR-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 21
FMN-binding split barrel UbiD C-terminal domain-like 22
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Carboxypeptidase regulatory domain-like Carboxypeptidase regulatory domain-like 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
CheY-like Histidine-containing phosphotransfer domain, HPT domain 22
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 22
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
LysM domain LysM domain 22
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 21
Acetyl-CoA synthetase-like PLP-dependent transferases 22
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
Galactose-binding domain-like Galactose-binding domain-like 22
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
E set domains (Trans)glycosidases 22
Translation proteins Ribosomal protein S5 domain 2-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
Copper amine oxidase, domain N Zn-dependent exopeptidases 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase C-terminal effector domain of the bipartite response regulators 21
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 21
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
PK beta-barrel domain-like PK C-terminal domain-like 21
HMA, heavy metal-associated domain HAD-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
TPR-like TPR-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Galactose-binding domain-like CheY-like 21
L30e-like alpha/beta knot 21
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 21
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 21
PLP-dependent transferases CoA-dependent acyltransferases 22
Arabinanase/levansucrase/invertase Galactose-binding domain-like 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
DNA clamp DNA clamp 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
Nucleic acid-binding proteins GAD domain-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Thiolase-like PLP-dependent transferases 22
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 22
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 21
(Trans)glycosidases Galactose mutarotase-like 22
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 21
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 22
Nudix "Winged helix" DNA-binding domain 21
Bacterial adhesins Bacterial adhesins 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Sensory domain-like PYP-like sensor domain (PAS domain) 22
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 22
Carbamate kinase-like ACT-like 21
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Class II aaRS and biotin synthetases GAD domain-like 21
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
"Winged helix" DNA-binding domain GAF domain-like 21
beta-lactamase/transpeptidase-like Fibronectin type III 22
Lysozyme-like Fibronectin type III 22
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
"Winged helix" DNA-binding domain Periplasmic binding protein-like I 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 21
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Cytochrome P450 Riboflavin synthase domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Tex N-terminal region-like RuvA domain 2-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
PIN domain-like Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Putative DNA-binding domain Probable bacterial effector-binding domain 11
PheT/TilS domain Putative DNA-binding domain 11
LysM domain Duplicated hybrid motif 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Copper amine oxidase, domain N Cysteine proteinases 11
ClpP/crotonase ACP-like 11
"Winged helix" DNA-binding domain HRDC-like 11
4Fe-4S ferredoxins Fe-only hydrogenase 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
HAMP domain-like HD-domain/PDEase-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
TGS-like Class II aaRS and biotin synthetases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PreATP-grasp domain Methylglyoxal synthase-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
MgtE N-terminal domain-like FliG 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Chondroitin AC/alginate lyase Ricin B-like lectins 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Glycosyl hydrolase domain Starch-binding domain-like 11
CBS-domain pair Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Bacillus cereus metalloprotein-like Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
SMI1/KNR4-like ARM repeat 11
Periplasmic binding protein-like II ACT-like 11
Six-hairpin glycosidases Fibronectin type III 11
Translation proteins Translation proteins 11
Nucleotide-binding domain Nucleotide-binding domain 11
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
Terpenoid synthases Terpenoid synthases 11
YajQ-like YajQ-like 11
DNA-glycosylase Nudix 11
RuvA domain 2-like JAB1/MPN domain 11
PHP domain-like RuvA domain 2-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
MetI-like MetI-like 11
(Trans)glycosidases Starch-binding domain-like 11
Concanavalin A-like lectins/glucanases Galactose-binding domain-like 11
Galactose-binding domain-like Carbohydrate-binding domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases PTS system fructose IIA component-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Invasin/intimin cell-adhesion fragments Copper amine oxidase, domain N 11
(Trans)glycosidases Putative glucosidase YicI, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
EspE N-terminal domain-like EspE N-terminal domain-like 11
LysM domain Barwin-like endoglucanases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Peptide methionine sulfoxide reductase Mss4-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Tex N-terminal region-like Ribonuclease H-like 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
Invasin/intimin cell-adhesion fragments E set domains 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
DAK1/DegV-like DhaL-like 11
Hsp33 domain HSP33 redox switch-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Six-hairpin glycosidases Carbohydrate-binding domain 11
Subtilisin-like Concanavalin A-like lectins/glucanases 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Tetrapyrrole methylase Nitrite and sulphite reductase 4Fe-4S domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
CheY-binding domain of CheA CheW-like 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Regulatory protein AraC "Helical backbone" metal receptor 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
TGS-like ThrRS/AlaRS common domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
NEAT domain-like NEAT domain-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
TGS-like ACT-like 11
Concanavalin A-like lectins/glucanases (Trans)glycosidases 11
PUA domain-like Nucleotidylyl transferase 11
Sensory domain-like HAMP domain-like 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Copper amine oxidase, domain N Thermostable phytase (3-phytase) 11
PKD domain PKD domain 11
SirA-like Rhodanese/Cell cycle control phosphatase 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Prokaryotic type I DNA topoisomerase "Winged helix" DNA-binding domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
Ribonuclease H-like RuvA domain 2-like 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Glycosyl hydrolases family 6, cellulases Fibronectin type III 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
CheY-like PP2C-like 11
Beta-D-glucan exohydrolase, C-terminal domain Galactose-binding domain-like 11
Nucleic acid-binding proteins BRCT domain 11
ClpP/crotonase PGBD-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Nucleotide cyclase EAL domain-like 11
PUA domain-like alpha/beta knot 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Oligoxyloglucan reducing end-specific cellobiohydrolase E set domains 11
Ribonuclease H-like DNA/RNA polymerases 11
Translation proteins PRC-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Single hybrid motif Single hybrid motif 11
PHP domain-like AF1531-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Metallo-dependent phosphatases DNA ligase/mRNA capping enzyme, catalytic domain 11
PHP14-like Phospholipase D/nuclease 11
Cytochrome P450 Flavoproteins 11
E set domains Starch-binding domain-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
MCP/YpsA-like MCP/YpsA-like 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
alpha/beta-Hydrolases SGNH hydrolase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Ricin B-like lectins Fibronectin type III 11
2Fe-2S ferredoxin-like ADC-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
alpha-helical ferredoxin Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
RuvA domain 2-like BRCT domain 11
Cell division protein ZapA-like Tropomyosin 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
PEP carboxykinase-like P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Nucleotide-binding domain ISP domain 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
PreATP-grasp domain PreATP-grasp domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Trigger factor ribosome-binding domain FKBP-like 11
YojJ-like RuvA domain 2-like 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Zinc beta-ribbon DNA primase core 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
PA domain Subtilisin-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
ARM repeat Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Glycosyl hydrolase domain Fibronectin type III 11
Subtilisin-like Carboxypeptidase regulatory domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
AbrB/MazE/MraZ-like GAF domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase FMN-linked oxidoreductases 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
ClpP/crotonase Thiolase-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
PDZ domain-like PGBD-like 11
Carbamate kinase-like PUA domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Lysozyme-like Cysteine proteinases 11
Arabinanase/levansucrase/invertase Ricin B-like lectins 11
Bacillus cereus metalloprotein-like Bacillus cereus metalloprotein-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PPK N-terminal domain-like PHP14-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
SMI1/KNR4-like L domain-like 11
Trypsin-like serine proteases His-Me finger endonucleases 11
Fibronectin type III PKD domain 11
ClpP/crotonase S-adenosyl-L-methionine-dependent methyltransferases 11
Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Alkaline phosphatase-like Copper amine oxidase, domain N 11
Subtilisin-like PKD domain 11
HprK N-terminal domain-like CBS-domain pair 11
CheY-like Methylesterase CheB, C-terminal domain 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Pectin lyase-like Galactose-binding domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Methionine synthase domain Methionine synthase activation domain-like 11
GAF domain-like CheY-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
PTS-regulatory domain, PRD PTS system fructose IIA component-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Carbohydrate-binding domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
HD-domain/PDEase-like TGS-like 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Glycoside hydrolase/deacetylase Galactose-binding domain-like 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Metallo-dependent phosphatases LysM domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Nucleotidylyl transferase tRNA-binding arm 11
E set domains Carbohydrate-binding domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
Concanavalin A-like lectins/glucanases Fibronectin type III 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA topoisomerase IV, alpha subunit 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
EspE N-terminal domain-like Nucleotide-diphospho-sugar transferases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PIN domain-like DNA/RNA polymerases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
AbrB/MazE/MraZ-like lambda repressor-like DNA-binding domains 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
4Fe-4S ferredoxins ADC-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ricin B-like lectins (Trans)glycosidases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
ALDH-like Dehydroquinate synthase-like 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Cystatin/monellin Cystatin/monellin 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
Ribokinase-like Concanavalin A-like lectins/glucanases 11
Concanavalin A-like lectins/glucanases Carboxypeptidase regulatory domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Ribokinase-like Arabinanase/levansucrase/invertase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
ACT-like Formyltransferase 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Nucleotidyltransferase TGS-like 11
GAF domain-like Nucleotide cyclase 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Glycosyl hydrolases family 6, cellulases Carbohydrate-binding domain 11
Class I glutamine amidotransferase-like E set domains 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PRC-barrel domain PRC-barrel domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Glycosyl hydrolase domain Putative glucosidase YicI, C-terminal domain 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Glycosyl hydrolase domain Carbohydrate-binding domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
DeoB insert domain-like Alkaline phosphatase-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 11
Galactose mutarotase-like Putative glucosidase YicI, C-terminal domain 11
CarD-like TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
PDZ domain-like ClpP/crotonase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
ACP-like FMN-dependent nitroreductase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
RCC1/BLIP-II Copper amine oxidase, domain N 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
UROD/MetE-like UROD/MetE-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Galactose-binding domain-like Ricin B-like lectins 11
Concanavalin A-like lectins/glucanases Glycosyl hydrolase domain 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
vWA-like vWA-like 11
Concanavalin A-like lectins/glucanases PKD domain 11
alpha-helical ferredoxin ARM repeat 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Bacterial adhesins Cna protein B-type domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
RNase III domain-like dsRNA-binding domain-like 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
HisI-like all-alpha NTP pyrophosphatases 11
DPP6 N-terminal domain-like Galactose-binding domain-like 11
Bacillus cereus metalloprotein-like Fe,Mn superoxide dismutase (SOD), N-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
RuvA domain 2-like RuvA domain 2-like 11
Subtilisin-like Fibronectin type III 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
LysM domain Zn-dependent exopeptidases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Collagen-binding domain Carboxypeptidase regulatory domain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Class II aaRS and biotin synthetases SufE/NifU 11
Nucleic acid-binding proteins PheT/TilS domain 11
NTF2-like NTF2-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
FabD/lysophospholipase-like FMN-linked oxidoreductases 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleotide cyclase HD-domain/PDEase-like 11
Hypothetical protein SAV1430 ARM repeat 11
E set domains E set domains 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Class II aaRS and biotin synthetases Translation proteins 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
CoA-dependent acyltransferases FMN-dependent nitroreductase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Acetyl-CoA synthetase-like FMN-dependent nitroreductase-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Barwin-like endoglucanases PHL pollen allergen 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Thioredoxin-like Six-hairpin glycosidases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Prokaryotic type I DNA topoisomerase P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
"Winged helix" DNA-binding domain PTS system fructose IIA component-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Galactose-binding domain-like Galactose mutarotase-like 11
ARM repeat Methylated DNA-protein cysteine methyltransferase domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
GAF domain-like GAF domain-like 11
alpha-helical ferredoxin Methylated DNA-protein cysteine methyltransferase domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Pectin lyase-like TNF-like 11
Copper amine oxidase, domain N PKD domain 11
HD-domain/PDEase-like ACT-like 11
TGS-like Class II aaRS ABD-related 11
"Winged helix" DNA-binding domain PRTase-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
FliG FliG 11
Flavoproteins Riboflavin synthase domain-like 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
Acyl-CoA N-acyltransferases (Nat) SCP-like 11
P-loop containing nucleoside triphosphate hydrolases Metallo-dependent phosphatases 11
P-loop containing nucleoside triphosphate hydrolases DNA ligase/mRNA capping enzyme, catalytic domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Fibronectin type III Copper amine oxidase, domain N 11
Carboxypeptidase regulatory domain-like PKD domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
E set domains Glycosyl hydrolase domain 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Copper amine oxidase, domain N Outer membrane efflux proteins (OEP) 11
Chorismate mutase II Aldolase 11
Globin-like Riboflavin synthase domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases PTS-regulatory domain, PRD 11
Ribosomal protein L6 Ribosomal protein L6 11
YjeF N-terminal domain-like Ribokinase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Copper amine oxidase, domain N NTF2-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Activating enzymes of the ubiquitin-like proteins JAB1/MPN domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Fibronectin type III Carboxypeptidase regulatory domain-like 11
DNA repair protein MutS, domain III SMR domain-like 11
Nucleotidyltransferase ACT-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain LysM domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
(Trans)glycosidases Anthrax protective antigen 11
Class I glutamine amidotransferase-like Invasin/intimin cell-adhesion fragments 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Tetrapyrrole methylase HemD-like 11

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