SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Paenibacillus mucilaginosus 3016

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

907 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homeodomain-like Homeodomain-like 15012
Regulatory protein AraC Homeodomain-like 696
CheY-like Homeodomain-like 603
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 605
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5728
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4113
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 404
CheY-like C-terminal effector domain of the bipartite response regulators 382
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 362
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 341
Galactose-binding domain-like (Trans)glycosidases 2921
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 2621
Acetyl-CoA synthetase-like ACP-like 2520
CoA-dependent acyltransferases ACP-like 2520
CoA-dependent acyltransferases CoA-dependent acyltransferases 2520
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 244
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 222
GroES-like NAD(P)-binding Rossmann-fold domains 201
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 201
(Trans)glycosidases Glycosyl hydrolase domain 2011
ACP-like ACP-like 2017
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 1815
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 173
Actin-like ATPase domain Actin-like ATPase domain 176
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 176
Fibronectin type III Fibronectin type III 1615
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 165
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1612
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 163
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 158
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 158
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 145
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1412
Galactose-binding domain-like Galactose-binding domain-like 1414
Nucleotide cyclase EAL domain-like 135
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1310
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1210
PYP-like sensor domain (PAS domain) Nucleotide cyclase 126
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 113
ACP-like alpha/beta-Hydrolases 119
CheY-like Homodimeric domain of signal transducing histidine kinase 1111
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 101
CoA-dependent acyltransferases alpha/beta-Hydrolases 108
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 108
Fibronectin type III Carbohydrate-binding domain 109
Fibronectin type III Type I dockerin domain 98
Fibronectin type III (Trans)glycosidases 99
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 92
"Winged helix" DNA-binding domain PLP-dependent transferases 91
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 93
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 94
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 91
Thiolase-like Thiolase-like 93
PYP-like sensor domain (PAS domain) EAL domain-like 83
TrpR-like TrpR-like 81
beta-Roll beta-Roll 83
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 82
P-loop containing nucleoside triphosphate hydrolases MOP-like 81
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 82
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 81
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 71
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 74
cAMP-binding domain-like "Winged helix" DNA-binding domain 71
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 77
Class II aaRS and biotin synthetases Class II aaRS ABD-related 74
Galactose mutarotase-like (Trans)glycosidases 75
PDZ domain-like Trypsin-like serine proteases 74
(Trans)glycosidases E set domains 76
MalF N-terminal region-like MetI-like 62
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 62
GAF domain-like Homodimeric domain of signal transducing histidine kinase 66
Carbohydrate-binding domain Type I dockerin domain 65
Fibronectin type III Pectin lyase-like 65
Homeodomain-like Probable bacterial effector-binding domain 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 52
HAD-like Calcium ATPase, transmembrane domain M 54
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 52
Phospholipase D/nuclease Phospholipase D/nuclease 52
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 53
Six-hairpin glycosidases Fibronectin type III 54
Galactose-binding domain-like Fibronectin type III 55
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 53
Thiolase-like ACP-like 54
P-loop containing nucleoside triphosphate hydrolases Translation proteins 54
Pectin lyase-like Pectin lyase-like 54
(Trans)glycosidases Class I glutamine amidotransferase-like 51
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 51
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 53
Calcium ATPase, transduction domain A HAD-like 54
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 52
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 52
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 51
Alpha-L RNA-binding motif Pseudouridine synthase 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
ACP-like NAD(P)-binding Rossmann-fold domains 54
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 54
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 51
Galactose-binding domain-like SGNH hydrolase 53
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 52
Sigma2 domain of RNA polymerase sigma factors NTF2-like 51
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 43
Galactose-binding domain-like Galactose mutarotase-like 44
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 42
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 43
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 42
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 43
Copper amine oxidase, domain N Copper amine oxidase, domain N 44
"Winged helix" DNA-binding domain Actin-like ATPase domain 42
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 42
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 43
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
CBS-domain pair FAD-binding/transporter-associated domain-like 41
Triger factor/SurA peptide-binding domain-like FKBP-like 44
lambda repressor-like DNA-binding domains RmlC-like cupins 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 43
Arabinanase/levansucrase/invertase AbfB domain 42
HlyD-like secretion proteins HlyD-like secretion proteins 43
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 42
Lysozyme-like beta-lactamase/transpeptidase-like 42
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 41
Thiolase-like NAD(P)-binding Rossmann-fold domains 43
Galactose mutarotase-like Glycosyl hydrolase domain 42
CheY-like CheY-like 44
ACT-like ACT-like 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
(Trans)glycosidases Carbohydrate-binding domain 44
PDZ domain-like ClpP/crotonase 33
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 31
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
SH3-domain Cysteine proteinases 32
Nucleic acid-binding proteins RuvA domain 2-like 33
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
Arabinanase/levansucrase/invertase Ricin B-like lectins 31
Bacillus cereus metalloprotein-like Bacillus cereus metalloprotein-like 32
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 33
ACP-like S-adenosyl-L-methionine-dependent methyltransferases 33
(Trans)glycosidases CBD9-like 33
GAF domain-like CheY-like 33
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 31
PYP-like sensor domain (PAS domain) Homeodomain-like 33
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 33
Carbohydrate binding domain Fibronectin type III 33
Translation proteins EF-G C-terminal domain-like 32
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 31
LysM domain LysM domain 33
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 31
NAD(P)-binding Rossmann-fold domains ACT-like 33
RCC1/BLIP-II Fibronectin type III 33
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 32
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Chondroitin AC/alginate lyase Galactose mutarotase-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 31
RmlC-like cupins Homeodomain-like 32
Thiolase-like FabD/lysophospholipase-like 32
tRNA-binding arm Class II aaRS and biotin synthetases 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Galactose mutarotase-like Hyaluronate lyase-like, C-terminal domain 33
HAMP domain-like Nucleotide cyclase 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
SGNH hydrolase Fibronectin type III 33
Fibronectin type III Invasin/intimin cell-adhesion fragments 33
Galactose-binding domain-like Invasin/intimin cell-adhesion fragments 33
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 31
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 31
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
PreATP-grasp domain Rudiment single hybrid motif 32
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 31
"Winged helix" DNA-binding domain GAF domain-like 31
Arabinanase/levansucrase/invertase Invasin/intimin cell-adhesion fragments 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase C-terminal effector domain of the bipartite response regulators 31
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 31
E set domains Glycosyl hydrolase domain 33
FabD/lysophospholipase-like ACP-like 32
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 31
Sensory domain-like Sporulation response regulatory protein Spo0B 32
MetI-like MetI-like 31
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 32
GroEL apical domain-like GroEL equatorial domain-like 33
PYP-like sensor domain (PAS domain) CheY-like 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Chondroitin AC/alginate lyase Hyaluronate lyase-like, C-terminal domain 33
E set domains Fibronectin type III 33
HlyD-like secretion proteins Single hybrid motif 21
"Winged helix" DNA-binding domain Periplasmic binding protein-like I 21
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HAMP domain-like PYP-like sensor domain (PAS domain) 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Tricorn protease N-terminal domain Fibronectin type III 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
"Winged helix" DNA-binding domain Chorismate lyase-like 21
Serine metabolism enzymes domain ACT-like 22
RCC1/BLIP-II RCC1/BLIP-II 21
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 22
MFS general substrate transporter MFS general substrate transporter 21
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Sensory domain-like Nucleotide cyclase 22
Pentapeptide repeat-like Pentapeptide repeat-like 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
DNA clamp DNA clamp 21
(Trans)glycosidases Invasin/intimin cell-adhesion fragments 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Copper amine oxidase, domain N YWTD domain 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 22
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 22
HprK N-terminal domain-like CBS-domain pair 21
Glycosyl hydrolase domain Fibronectin type III 22
(Trans)glycosidases Copper amine oxidase, domain N 22
Galactose-binding domain-like CBD9-like 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Galactose mutarotase-like Putative glucosidase YicI, C-terminal domain 21
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
HprK N-terminal domain-like PEP carboxykinase-like 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
Acetyl-CoA synthetase-like S-adenosyl-L-methionine-dependent methyltransferases 22
RCC1/BLIP-II Type I dockerin domain 22
SacY-like RNA-binding domain PTS-regulatory domain, PRD 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 21
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 22
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Galactose-binding domain-like Six-hairpin glycosidases 22
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
TGS-like Class II aaRS and biotin synthetases 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Chondroitin AC/alginate lyase Galactose-binding domain-like 22
Glucose permease domain IIB Duplicated hybrid motif 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
ThrRS/AlaRS common domain Class II aaRS ABD-related 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Oligoxyloglucan reducing end-specific cellobiohydrolase E set domains 22
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Sensory domain-like PYP-like sensor domain (PAS domain) 21
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Copper amine oxidase, domain N Cysteine proteinases 22
Putative DNA-binding domain Periplasmic binding protein-like II 21
TGS-like Class II aaRS ABD-related 21
Cyclophilin-like PH0987 N-terminal domain-like 22
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
alpha/beta-Hydrolases alpha/beta-Hydrolases 21
Concanavalin A-like lectins/glucanases Invasin/intimin cell-adhesion fragments 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
HMA, heavy metal-associated domain HAD-like 22
Histidine-containing phosphotransfer domain, HPT domain CheY-like 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
L30e-like alpha/beta knot 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
"Winged helix" DNA-binding domain Bet v1-like 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Carbamate kinase-like ACT-like 21
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Homeodomain-like "Helical backbone" metal receptor 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
Integrin alpha N-terminal domain Fibronectin type III 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
PK beta-barrel domain-like PK C-terminal domain-like 22
E set domains Invasin/intimin cell-adhesion fragments 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 21
Galactose-binding domain-like Carbohydrate-binding domain 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 22
Carbohydrate binding domain (Trans)glycosidases 22
TGS-like ThrRS/AlaRS common domain 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 21
DPP6 N-terminal domain-like Fibronectin type III 22
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 21
(Trans)glycosidases Putative glucosidase YicI, C-terminal domain 21
Beta-D-glucan exohydrolase, C-terminal domain Galactose-binding domain-like 21
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 22
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 21
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 21
"Winged helix" DNA-binding domain CBS-domain pair 21
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 21
CoA-dependent acyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
(Trans)glycosidases Ricin B-like lectins 21
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Glycosyl hydrolase domain Putative glucosidase YicI, C-terminal domain 21
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
Arabinanase/levansucrase/invertase Galactose-binding domain-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 22
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 22
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 21
LysM domain Duplicated hybrid motif 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Fibronectin type III Starch-binding domain-like 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 21
Single hybrid motif CoA-dependent acyltransferases 22
CheC-like Surface presentation of antigens (SPOA) 22
Cupredoxins Cupredoxins 21
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 21
ISP domain Bet v1-like 21
Galactose-binding domain-like Homodimeric domain of signal transducing histidine kinase 22
"Winged helix" DNA-binding domain HprK N-terminal domain-like 21
TPR-like TPR-like 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Pectin lyase-like Galactose-binding domain-like 22
Glycosyl hydrolase domain Galactose-binding domain-like 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 22
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 11
Sigma2 domain of RNA polymerase sigma factors Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
Putative DNA-binding domain Putative DNA-binding domain 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain LysM domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
"Winged helix" DNA-binding domain PTS system IIB component-like 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Copper amine oxidase, domain N SGNH hydrolase 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
CalX-like CalX-like 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
TGS-like ACT-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Nucleotide cyclase Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
FliG FliG 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PTS-regulatory domain, PRD PTS system IIB component-like 11
Clavaminate synthase-like ARM repeat 11
Tricorn protease N-terminal domain Type I dockerin domain 11
Glycoside hydrolase/deacetylase Copper amine oxidase, domain N 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
(Trans)glycosidases (Trans)glycosidases 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
LysM domain (Trans)glycosidases 11
CheY-like Nucleotide cyclase 11
Glycosyl hydrolase domain Invasin/intimin cell-adhesion fragments 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
PDZ domain-like PGBD-like 11
Cadherin-like Galactose-binding domain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PGBD-like PR-1-like 11
Trimeric LpxA-like enzymes Phosphoglucomutase, C-terminal domain 11
GAF domain-like GAF domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
PheT/TilS domain Putative DNA-binding domain 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
NHL repeat TPR-like 11
Trypsin-like serine proteases TPR-like 11
UROD/MetE-like UROD/MetE-like 11
Cupredoxins Cytochrome c 11
L9 N-domain-like Ribonuclease H-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
ClpP/crotonase Copper amine oxidase, domain N 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 11
SirA-like Rhodanese/Cell cycle control phosphatase 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
PRC-barrel domain PRC-barrel domain 11
Subtilisin-like Collagen-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
PTS system IIB component-like Phoshotransferase/anion transport protein 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Globin-like Riboflavin synthase domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Copper amine oxidase, domain N Thermostable phytase (3-phytase) 11
Flavoproteins Riboflavin synthase domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases TPR-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Ribbon-helix-helix ACT-like 11
Tricorn protease domain 2 Type I dockerin domain 11
Chondroitin AC/alginate lyase Cadherin-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase DinB/YfiT-like putative metalloenzymes 11
Copper amine oxidase, domain N Triger factor/SurA peptide-binding domain-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase (Trans)glycosidases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Galactose mutarotase-like Starch-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
SMAD/FHA domain C-terminal effector domain of the bipartite response regulators 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Copper amine oxidase, domain N Carboxypeptidase regulatory domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Zinc beta-ribbon DNA primase core 11
YjeF N-terminal domain-like Ribokinase-like 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glycosyl hydrolases family 6, cellulases Fibronectin type III 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Homeodomain-like Glycosyl hydrolase domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
HAMP domain-like EAL domain-like 11
Translation proteins PRC-barrel domain 11
Creatininase P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Six-hairpin glycosidases Carbohydrate-binding domain 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Bet v1-like Bet v1-like 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
Protein kinase-like (PK-like) GAF domain-like 11
Zinc beta-ribbon N-terminal domain of DnaB helicase 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Metalloproteases ("zincins"), catalytic domain SGNH hydrolase 11
PHP14-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Bacillus cereus metalloprotein-like Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Nucleotide cyclase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Metalloproteases ("zincins"), catalytic domain Fibronectin type III 11
vWA-like vWA-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
CarD-like TRCF domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
Arabinanase/levansucrase/invertase Arabinanase/levansucrase/invertase 11
DPP6 N-terminal domain-like Starch-binding domain-like 11
PKD domain PKD domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Acyl-CoA N-acyltransferases (Nat) SCP-like 11
CBS-domain pair P-loop containing nucleoside triphosphate hydrolases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
PrpR receptor domain-like Homeodomain-like 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Inosine monophosphate dehydrogenase (IMPDH) 11
Trigger factor ribosome-binding domain FKBP-like 11
Globin-like Cobalamin (vitamin B12)-binding domain 11
Cyclophilin-like Single hybrid motif 11
Nucleotide-binding domain ISP domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
ALDH-like Dehydroquinate synthase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
PreATP-grasp domain Cyclophilin-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
"Winged helix" DNA-binding domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
DNA primase core N-terminal domain of DnaB helicase 11
Galactose-binding domain-like RCC1/BLIP-II 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
ClpP/crotonase PGBD-like 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Tricorn protease N-terminal domain Tricorn protease N-terminal domain 11
Lamin A/C globular tail domain Metallo-dependent phosphatases 11
CheY-like "Winged helix" DNA-binding domain 11
Glycoside hydrolase/deacetylase Fibronectin type III 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
DNA primase core P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Regulatory protein AraC "Helical backbone" metal receptor 11
Thiolase-like alpha/beta-Hydrolases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Pectin lyase-like E set domains 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
PIN domain-like DNA/RNA polymerases 11
Hsp33 domain HSP33 redox switch-like 11
Ankyrin repeat LexA/Signal peptidase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
Formyltransferase FMT C-terminal domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-binding domain Nucleotide-binding domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases Translation proteins 11
Peptide methionine sulfoxide reductase Mss4-like 11
PK C-terminal domain-like Phosphohistidine domain 11
FabD/lysophospholipase-like Inosine monophosphate dehydrogenase (IMPDH) 11
GIY-YIG endonuclease RuvA domain 2-like 11
Rudiment single hybrid motif Cyclophilin-like 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Galactose-binding domain-like E set domains 11
Chorismate mutase II Aldolase 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
Nucleotidylyl transferase tRNA-binding arm 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
YajQ-like YajQ-like 11
Nucleotidyltransferase TGS-like 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nudix Acyl-CoA N-acyltransferases (Nat) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 11
Periplasmic binding protein-like II ACT-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
PGBD-like Hedgehog/DD-peptidase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Arabinanase/levansucrase/invertase Fibronectin type III 11
PIN domain-like Ribonuclease H-like 11
Homeodomain-like FAD/NAD(P)-binding domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
beta-Galactosidase/glucuronidase domain Invasin/intimin cell-adhesion fragments 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 11
Nucleotide-diphospho-sugar transferases HCP-like 11
Collagen-binding domain Collagen-binding domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
Six-hairpin glycosidases Invasin/intimin cell-adhesion fragments 11
RuvA domain 2-like JAB1/MPN domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases alpha/beta-Hydrolases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Integrin alpha N-terminal domain Invasin/intimin cell-adhesion fragments 11
Families 57/38 glycoside transferase middle domain UDP-Glycosyltransferase/glycogen phosphorylase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
RNase III domain-like dsRNA-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases GAF domain-like 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
4Fe-4S ferredoxins ARM repeat 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
L domain-like Copper amine oxidase, domain N 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Class I glutamine amidotransferase-like Integrin alpha N-terminal domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
Copper amine oxidase, domain N Zn-dependent exopeptidases 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
GroEL-intermediate domain like GroEL apical domain-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Carbon-nitrogen hydrolase Acyl-CoA N-acyltransferases (Nat) 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
Metallo-dependent phosphatases LysM domain 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Class II aaRS and biotin synthetases GAD domain-like 11
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 11
Methionine synthase domain Methionine synthase activation domain-like 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
Barwin-like endoglucanases LysM domain 11
Trimeric LpxA-like enzymes Phosphoglucomutase, first 3 domains 11
PA domain Subtilisin-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
AraD/HMP-PK domain-like AraD/HMP-PK domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, C-terminal domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
AbfB domain Invasin/intimin cell-adhesion fragments 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Alkaline phosphatase-like E set domains 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Copper amine oxidase, domain N PEBP-like 11
Pectin lyase-like LysM domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
NAD(P)-linked oxidoreductase alpha-helical ferredoxin 11
Galactose-binding domain-like Glycoside hydrolase/deacetylase 11
RuvA domain 2-like RuvA domain 2-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
Carbamate kinase-like PUA domain-like 11
PR-1-like Copper amine oxidase, domain N 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PHP domain-like RuvA domain 2-like 11
HD-domain/PDEase-like ACT-like 11
DNA repair protein MutS, domain III SMR domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
SMI1/KNR4-like ClpS-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Tricorn protease domain 2 Carbohydrate-binding domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Nucleotide cyclase Nucleotide cyclase 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Invasin/intimin cell-adhesion fragments 11
Transmembrane di-heme cytochromes Oxidoreductase molybdopterin-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PLP-dependent transferases Class I glutamine amidotransferase-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Translation proteins ThrRS/AlaRS common domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Copper amine oxidase, domain N FKBP-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Regulatory protein AraC (Trans)glycosidases 11
PPK N-terminal domain-like PHP14-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
LysM domain Zn-dependent exopeptidases 11
NHL repeat HCP-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Starch-binding domain-like Galactose-binding domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases AbrB/MazE/MraZ-like 11
Nucleotide cyclase TPR-like 11
PGBD-like Cysteine proteinases 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
PreATP-grasp domain Single hybrid motif 11
Concanavalin A-like lectins/glucanases Galactose-binding domain-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Tricorn protease domain 2 Fibronectin type III 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Concanavalin A-like lectins/glucanases Ricin B-like lectins 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Duplicated hybrid motif 11
Class II aaRS and biotin synthetases SufE/NifU 11
Copper amine oxidase, domain N Ankyrin repeat 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
NAD(P)-binding Rossmann-fold domains S-adenosyl-L-methionine-dependent methyltransferases 11
DNA-glycosylase Nudix 11
Pectin lyase-like CBD9-like 11
Nucleotidyltransferase ACT-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Sensory domain-like HD-domain/PDEase-like 11
Nucleic acid-binding proteins BRCT domain 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Putative DNA-binding domain Probable bacterial effector-binding domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
alpha-D-mannose-specific plant lectins alpha-D-mannose-specific plant lectins 11
Copper amine oxidase, domain N Barwin-like endoglucanases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
E set domains Carbohydrate-binding domain 11
Starch-binding domain-like Cna protein B-type domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Regulatory protein AraC Glycosyl hydrolase domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Pectin lyase-like Invasin/intimin cell-adhesion fragments 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains PilZ domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
lambda repressor-like DNA-binding domains lambda repressor-like DNA-binding domains 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
CheY-like Methylesterase CheB, C-terminal domain 11
PDZ domain-like Copper amine oxidase, domain N 11
Invasin/intimin cell-adhesion fragments PKD domain 11
Alkaline phosphatase-like Copper amine oxidase, domain N 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
EspE N-terminal domain-like EspE N-terminal domain-like 11
PRTase-like PRTase-like 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Copper amine oxidase, domain N LexA/Signal peptidase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Copper amine oxidase, domain N Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Glycosyl hydrolases family 6, cellulases Carbohydrate-binding domain 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Copper amine oxidase, domain N Duplicated hybrid motif 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Copper amine oxidase, domain N PKD domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
HD-domain/PDEase-like TGS-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
TROVE domain-like vWA-like 11
Tex N-terminal region-like RuvA domain 2-like 11
PUA domain-like alpha/beta knot 11
Tetrapyrrole methylase Nitrite and sulphite reductase 4Fe-4S domain-like 11
DPP6 N-terminal domain-like Type I dockerin domain 11
Concanavalin A-like lectins/glucanases Fibronectin type III 11
PreATP-grasp domain PreATP-grasp domain 11
Bacillus cereus metalloprotein-like Fe,Mn superoxide dismutase (SOD), N-terminal domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
MoaD/ThiS Molybdopterin synthase subunit MoaE 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Copper amine oxidase, domain N Calcium-dependent phosphotriesterase 11
HisI-like all-alpha NTP pyrophosphatases 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
E set domains Six-hairpin glycosidases 11
Hypothetical protein SAV1430 ARM repeat 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
DNase I-like Mannose-binding lectins 11
Tetrapyrrole methylase HemD-like 11
Carbamate kinase-like Zn-dependent exopeptidases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Acid phosphatase/Vanadium-dependent haloperoxidase Pectin lyase-like 11
ACT-like Formyltransferase 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
Rudiment single hybrid motif Single hybrid motif 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Tex N-terminal region-like Ribonuclease H-like 11
Starch-binding domain-like Carboxypeptidase regulatory domain-like 11
CBS-domain pair Homeodomain-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Cyclophilin-like Cyclophilin-like 11
PK beta-barrel domain-like Phosphohistidine domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
DPP6 N-terminal domain-like Carbohydrate-binding domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
L domain-like Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Glycoside hydrolase/deacetylase UDP-Glycosyltransferase/glycogen phosphorylase 11
DeoB insert domain-like Alkaline phosphatase-like 11
CheY-binding domain of CheA CheW-like 11
PUA domain-like Nucleotidylyl transferase 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Homeodomain-like SIS domain 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
AbrB/MazE/MraZ-like GAF domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Protein kinase-like (PK-like) Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
CBD9-like CBD9-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
RuvA domain 2-like BRCT domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like PilZ domain-like 11
Homeodomain-like (Trans)glycosidases 11
Rhodanese/Cell cycle control phosphatase Metallo-hydrolase/oxidoreductase 11
Ribonuclease H-like RuvA domain 2-like 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
DinB/YfiT-like putative metalloenzymes DinB/YfiT-like putative metalloenzymes 11
YojJ-like RuvA domain 2-like 11
NHL repeat Copper amine oxidase, domain N 11
Nucleic acid-binding proteins GAD domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
E set domains Carbohydrate binding domain 11
Translation proteins Translation proteins 11
Cystatin/monellin Cystatin/monellin 11
PH0987 N-terminal domain-like Single hybrid motif 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
FAD/NAD(P)-binding domain Thioredoxin-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
YrdC/RibB RibA-like 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, first 3 domains 11
"Winged helix" DNA-binding domain PRTase-like 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
Glycoside hydrolase/deacetylase Starch-binding domain-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Carbohydrate-binding domain 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Carboxypeptidase regulatory domain-like Cna protein B-type domain 11
RCC1/BLIP-II Carbohydrate-binding domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11

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