SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Oceanimonas sp. GK1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

699 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 421
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3016
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2314
EAL domain-like Nucleotide cyclase 189
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 155
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 134
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 122
PYP-like sensor domain (PAS domain) Nucleotide cyclase 128
Actin-like ATPase domain Actin-like ATPase domain 124
CheY-like Homeodomain-like 102
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 105
P-loop containing nucleoside triphosphate hydrolases Translation proteins 106
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 95
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 94
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 97
PYP-like sensor domain (PAS domain) EAL domain-like 96
CheY-like P-loop containing nucleoside triphosphate hydrolases 91
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 87
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 87
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
Homodimeric domain of signal transducing histidine kinase CheY-like 87
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 83
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 81
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 84
Thiolase-like Thiolase-like 81
CheY-like C-terminal effector domain of the bipartite response regulators 81
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 87
Thioredoxin-like GST C-terminal domain-like 71
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
P-loop containing nucleoside triphosphate hydrolases MOP-like 71
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
CheY-like Histidine-containing phosphotransfer domain, HPT domain 65
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 63
Cytochrome c Cytochrome c 64
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 65
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 61
Alpha-L RNA-binding motif Pseudouridine synthase 61
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 63
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 65
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 62
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 63
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 63
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 63
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 63
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 61
ACT-like ACT-like 64
MetI-like MetI-like 63
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 53
PurM N-terminal domain-like PurM C-terminal domain-like 52
Translation proteins EF-G C-terminal domain-like 53
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 52
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 52
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 51
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
HAD-like Calcium ATPase, transmembrane domain M 54
Calcium ATPase, transduction domain A HAD-like 54
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 51
PreATP-grasp domain Rudiment single hybrid motif 52
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
GroES-like NAD(P)-binding Rossmann-fold domains 52
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 41
Single hybrid motif CoA-dependent acyltransferases 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 43
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 42
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
PYP-like sensor domain (PAS domain) CheY-like 44
CBS-domain pair FAD-binding/transporter-associated domain-like 41
PLP-binding barrel Alanine racemase C-terminal domain-like 43
lambda repressor-like DNA-binding domains RmlC-like cupins 41
TrkA C-terminal domain-like TrkA C-terminal domain-like 43
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 42
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 43
"Winged helix" DNA-binding domain GAF domain-like 41
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 42
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
CheY-like EAL domain-like 32
Nucleic acid-binding proteins RuvA domain 2-like 33
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 32
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 31
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
"Winged helix" DNA-binding domain Chorismate lyase-like 31
ACT-like Formyltransferase 31
Folate-binding domain Aminomethyltransferase beta-barrel domain 32
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 32
ISP domain Bet v1-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
HMA, heavy metal-associated domain HAD-like 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
HD-domain/PDEase-like ACT-like 32
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 32
GAF domain-like GAF domain-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Aconitase iron-sulfur domain LeuD/IlvD-like 32
Nucleotidyltransferase HD-domain/PDEase-like 32
Lysozyme-like beta-lactamase/transpeptidase-like 32
Homeodomain-like Homeodomain-like 32
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 32
Carbamate kinase-like ACT-like 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Nucleotidyltransferase ACT-like 32
GAF domain-like PYP-like sensor domain (PAS domain) 33
"Winged helix" DNA-binding domain PLP-dependent transferases 31
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Cupredoxins Cytochrome c 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Nucleotidylyl transferase Alpha-L RNA-binding motif 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
EAL domain-like CBS-domain pair 22
TGS-like ACT-like 21
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
PDZ domain-like PDZ domain-like 22
CBS-domain pair Nucleotide cyclase 22
CheY-like Nucleotide cyclase 22
P-loop containing nucleoside triphosphate hydrolases ACT-like 22
Cupredoxins Cupredoxins 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
PGBD-like L,D-transpeptidase catalytic domain-like 21
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Zinc beta-ribbon Zinc beta-ribbon 22
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 22
ClpP/crotonase ClpP/crotonase 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nucleotidyltransferase TGS-like 21
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
Trypsin-like serine proteases PDZ domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
FliG FliG 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
GAF domain-like Nucleotide cyclase 22
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 21
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
CheY-like CheY-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Ribonuclease H-like DNA/RNA polymerases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 21
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
RmlC-like cupins Homeodomain-like 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Actin-like ATPase domain HD-domain/PDEase-like 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
TPR-like TPR-like 22
HD-domain/PDEase-like TGS-like 21
cAMP-binding domain-like CBS-domain pair 21
Class I glutamine amidotransferase-like Homeodomain-like 21
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
TSP type-3 repeat OmpA-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
vWA-like beta-Roll 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
HPr-like Phosphohistidine domain 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
PurS-like FGAM synthase PurL, linker domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
2Fe-2S ferredoxin-like ADC-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
PPK N-terminal domain-like PHP14-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Phosphotyrosine protein phosphatases I "Winged helix" DNA-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Ribosomal protein L6 Ribosomal protein L6 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
NTF2-like Sec-C motif 11
Thioredoxin-like Thioredoxin-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases LexA/Signal peptidase 11
Lysozyme-like LysM domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
DNA clamp DNA clamp 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
CarD-like TRCF domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
"Winged helix" DNA-binding domain MukF C-terminal domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PK beta-barrel domain-like PK C-terminal domain-like 11
post-HMGL domain-like Single hybrid motif 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
YajQ-like YajQ-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Phase 1 flagellin Phase 1 flagellin 11
L30e-like alpha/beta knot 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Class II aaRS and biotin synthetases Translation proteins 11
TGS-like Class II aaRS ABD-related 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
UDP-Glycosyltransferase/glycogen phosphorylase Glycoside hydrolase/deacetylase 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Dihydropteroate synthetase-like Methionine synthase domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
PreATP-grasp domain PreATP-grasp domain 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Barwin-like endoglucanases Sporulation related repeat 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
CheY-like HD-domain/PDEase-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
EAL domain-like HD-domain/PDEase-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
ClpP/crotonase NfeD domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
GAF domain-like HlyD-like secretion proteins 11
P-loop containing nucleoside triphosphate hydrolases Sporulation related repeat 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Globin-like Riboflavin synthase domain-like 11
Translation proteins PRC-barrel domain 11
Hsp33 domain HSP33 redox switch-like 11
Aldolase AFP III-like domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Aldolase post-HMGL domain-like 11
Ribokinase-like Nucleotidylyl transferase 11
PDZ domain-like ClpP/crotonase 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
HisI-like all-alpha NTP pyrophosphatases 11
MgtE N-terminal domain-like CBS-domain pair 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
FKBP-like FKBP-like 11
RmlC-like cupins RmlC-like cupins 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
CheC-like Surface presentation of antigens (SPOA) 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
RuvA domain 2-like JAB1/MPN domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
GAF domain-like Homeodomain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Phoshotransferase/anion transport protein HPr-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Flavoproteins Riboflavin synthase domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
HCP-like Trypsin-like serine proteases 11
Phospholipase D/nuclease LexA/Signal peptidase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
PIN domain-like DNA/RNA polymerases 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Sensory domain-like Nucleotide cyclase 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Putative DNA-binding domain Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
DNA-glycosylase Nudix 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
FAD-linked oxidoreductase ALDH-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
HAD-like Ribosomal protein S5 domain 2-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
4Fe-4S ferredoxins ADC-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
YrdC/RibB RibA-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Sensory domain-like Sensory domain-like 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
MOSC N-terminal domain-like 2Fe-2S ferredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
ACT-like PYP-like sensor domain (PAS domain) 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Periplasmic binding protein-like II Aldolase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
LysM domain LysM domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
HybD-like YrdC/RibB 11
Cadherin-like Pectin lyase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Nucleotidyltransferase Nucleotidyltransferase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
HRDC-like HRDC-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Ribokinase-like Thiamin phosphate synthase 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
RuvA domain 2-like RuvA domain 2-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Regulatory protein AraC Homeodomain-like 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Rudiment single hybrid motif Single hybrid motif 11
Cadherin-like Cadherin-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Chorismate mutase II ACT-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
PIN domain-like Ribonuclease H-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
PreATP-grasp domain Single hybrid motif 11
PurS-like PurM N-terminal domain-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
alpha/beta-Hydrolases AhpD-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
HAMP domain-like CheY-like 11
Bacterial muramidases Lysozyme-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Pseudouridine synthase PUA domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
PurS-like Class I glutamine amidotransferase-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain MOP-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Zn-dependent exopeptidases LysM domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
TGS-like Class II aaRS and biotin synthetases 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
OMPA-like OmpA-like 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Rubredoxin-like FAD/NAD(P)-binding domain 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
TGS-like ThrRS/AlaRS common domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Periplasmic binding protein-like II ACT-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Carbamate kinase-like PUA domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Globin-like Nucleotide cyclase 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
FAD/NAD(P)-binding domain Folate-binding domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
PheT/TilS domain Putative DNA-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Aldolase Single hybrid motif 11
Formyltransferase FMT C-terminal domain-like 11
LysM domain Duplicated hybrid motif 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Lysozyme-like PGBD-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
PHP14-like Phospholipase D/nuclease 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Macro domain-like Zn-dependent exopeptidases 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Ribonuclease H-like HRDC-like 11
PTS system IIB component-like PTS system IIB component-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
HybD-like Acylphosphatase/BLUF domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Periplasmic binding protein-like II GlnB-like 11
Translation proteins ThrRS/AlaRS common domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
MOP-like MOP-like 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
GAF domain-like EAL domain-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Acyl-CoA N-acyltransferases (Nat) Thioesterase/thiol ester dehydrase-isomerase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like BRCT domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
DNA methylase specificity domain DNA methylase specificity domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
ACT-like Homeodomain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
GAF domain-like CheY-like 11
PUA domain-like alpha/beta knot 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
CheW-like CheY-like 11
Ribonuclease H-like RuvA domain 2-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
LysM domain L,D-transpeptidase catalytic domain-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Homeodomain-like SIS domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PLP-dependent transferases PLP-dependent transferases 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
GAF domain-like Phosphohistidine domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Translation proteins Translation proteins 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
ACT-like Aldolase 11
ACP-like alpha/beta-Hydrolases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
CBS-domain pair MgtE membrane domain-like 11
Acetyl-CoA synthetase-like ACP-like 11
Chorismate mutase II Aldolase 11
FMN-binding split barrel UbiD C-terminal domain-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
CBS-domain pair CBS-domain pair 11
Periplasmic binding protein-like II Lysozyme-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
CheY-like CheC-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Nucleic acid-binding proteins GAD domain-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
GroES-like GroES-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Single hybrid motif Single hybrid motif 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
H-NS histone-like proteins H-NS histone-like proteins 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
GroEL-intermediate domain like GroEL apical domain-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Thioredoxin-like TPR-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
PurS-like PurM C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
gp5 N-terminal domain-like Phage fibre proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Putative isomerase YbhE MetI-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
PilZ domain-like PilZ domain-like 11
TerB-like Chaperone J-domain 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]