SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Achromobacter xylosoxidans A8

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

781 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 2332
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 594
"Winged helix" DNA-binding domain GAF domain-like 541
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 543
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4014
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4012
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 395
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 385
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 343
Thiolase-like Thiolase-like 323
Thioredoxin-like GST C-terminal domain-like 291
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 291
CheY-like C-terminal effector domain of the bipartite response regulators 293
Homeodomain-like Homeodomain-like 287
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 277
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 243
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 245
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 232
GroES-like NAD(P)-binding Rossmann-fold domains 232
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 195
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 179
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 166
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 155
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 155
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 155
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 155
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 155
Actin-like ATPase domain Actin-like ATPase domain 144
P-loop containing nucleoside triphosphate hydrolases MOP-like 141
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 145
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 143
Cytochrome c Cytochrome c 145
"Winged helix" DNA-binding domain PLP-dependent transferases 132
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 131
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 134
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 122
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 125
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 122
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 122
"Winged helix" DNA-binding domain Chorismate lyase-like 112
PreATP-grasp domain Rudiment single hybrid motif 113
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 111
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 112
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 113
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 104
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 106
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 104
P-loop containing nucleoside triphosphate hydrolases Translation proteins 106
ISP domain Bet v1-like 102
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 107
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 103
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 92
Class I glutamine amidotransferase-like Homeodomain-like 92
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 84
RmlC-like cupins Homeodomain-like 81
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 85
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 81
cAMP-binding domain-like "Winged helix" DNA-binding domain 81
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 83
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 76
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 71
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 75
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 75
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 75
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 74
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 75
HAD-like Calcium ATPase, transmembrane domain M 76
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 73
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 76
Calcium ATPase, transduction domain A HAD-like 76
Enolase N-terminal domain-like Enolase C-terminal domain-like 71
Homodimeric domain of signal transducing histidine kinase CheY-like 74
Homeodomain-like SIS domain 71
Phospholipase D/nuclease Phospholipase D/nuclease 74
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 75
Nucleotide cyclase EAL domain-like 75
TPR-like TPR-like 73
ClpP/crotonase ClpP/crotonase 62
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 62
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 64
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 63
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 62
Regulatory protein AraC Homeodomain-like 63
MetI-like MetI-like 62
Pectin lyase-like Autotransporter 66
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 51
HlyD-like secretion proteins HlyD-like secretion proteins 53
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 53
Translation proteins EF-G C-terminal domain-like 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
Single hybrid motif CoA-dependent acyltransferases 53
lambda repressor-like DNA-binding domains RmlC-like cupins 52
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 52
PreATP-grasp domain Single hybrid motif 52
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
PYP-like sensor domain (PAS domain) Nucleotide cyclase 55
Alpha-L RNA-binding motif Pseudouridine synthase 52
Rudiment single hybrid motif Single hybrid motif 52
CheY-like Homeodomain-like 52
Glutathione synthetase ATP-binding domain-like Single hybrid motif 52
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 53
LeuD/IlvD-like Aconitase iron-sulfur domain 52
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 52
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 41
(Trans)glycosidases Glycosyl hydrolase domain 44
Pectin lyase-like Pectin lyase-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 43
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 44
Phage tail proteins Phage tail proteins 43
PYP-like sensor domain (PAS domain) GAF domain-like 44
Acetyl-CoA synthetase-like ACP-like 44
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
PurM N-terminal domain-like PurM C-terminal domain-like 42
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 41
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 44
ACT-like ACT-like 44
Triger factor/SurA peptide-binding domain-like FKBP-like 44
CheY-like P-loop containing nucleoside triphosphate hydrolases 42
Phage tail proteins gp5 N-terminal domain-like 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
PapD-like Periplasmic chaperone C-domain 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Cupredoxins Cupredoxins 33
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
CheY-like Histidine-containing phosphotransfer domain, HPT domain 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Cadherin-like beta-Roll 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
PDZ domain-like PDZ domain-like 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
RuvA domain 2-like Nucleic acid-binding proteins 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
PLP-binding barrel Alanine racemase C-terminal domain-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
GAF domain-like Nucleotide cyclase 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 33
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 33
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 32
ACP-like ACP-like 33
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Sensory domain-like Nucleotide cyclase 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 31
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Nucleotidyltransferase ACT-like 32
E set domains (Trans)glycosidases 33
CoA-dependent acyltransferases ACP-like 33
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
GAF domain-like Homeodomain-like 33
HD-domain/PDEase-like Nucleotidyltransferase 32
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Cyclophilin-like PH0987 N-terminal domain-like 32
ParB/Sulfiredoxin KorB DNA-binding domain-like 32
CoA-dependent acyltransferases CoA-dependent acyltransferases 33
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 32
HD-domain/PDEase-like ACT-like 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 33
CheY-like EAL domain-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 32
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Trypsin-like serine proteases PDZ domain-like 32
HMA, heavy metal-associated domain HAD-like 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Oxidoreductase molybdopterin-binding domain E set domains 31
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
TGS-like ACT-like 21
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
HD-domain/PDEase-like TGS-like 21
Pentapeptide repeat-like Pentapeptide repeat-like 22
Translation proteins ThrRS/AlaRS common domain 22
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
GroES-like GroES-like 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
L30e-like alpha/beta knot 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Zinc beta-ribbon DNA primase core 22
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 22
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
vWA-like beta-Roll 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
CheY-like Methylesterase CheB, C-terminal domain 21
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Aldolase post-HMGL domain-like 22
Sensory domain-like Sensory domain-like 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
E set domains Glycosyl hydrolase domain 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 21
Nucleotidyltransferase TGS-like 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
PYP-like sensor domain (PAS domain) EAL domain-like 22
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 21
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
GAF domain-like GAF domain-like 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Cadherin-like vWA-like 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like 21
Sigma2 domain of RNA polymerase sigma factors NTF2-like 21
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
alpha/beta-Hydrolases NTF2-like 22
Lysozyme-like PGBD-like 21
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
Acyl-CoA N-acyltransferases (Nat) FKBP-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
PHP14-like Phospholipase D/nuclease 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Nudix "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like RuvA domain 2-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
PPK N-terminal domain-like PHP14-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
AhpD-like AhpD-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Metallo-hydrolase/oxidoreductase SCP-like 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
PreATP-grasp domain Cyclophilin-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
DNA clamp DNA clamp 11
Methylglyoxal synthase-like Methylglyoxal synthase-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Cyclophilin-like Single hybrid motif 11
MOP-like MOP-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
(Trans)glycosidases (Trans)glycosidases 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PUA domain-like alpha/beta knot 11
Nucleic acid-binding proteins GAD domain-like 11
CarD-like TRCF domain-like 11
FliG FliG 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
TPR-like "Winged helix" DNA-binding domain 11
E set domains E set domains 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Periplasmic binding protein-like II 11
Nucleotidylyl transferase tRNA-binding arm 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Thiolase-like Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
PurS-like PurM N-terminal domain-like 11
Pili subunits RuvA domain 2-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
4Fe-4S ferredoxins ADC-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
2Fe-2S ferredoxin-like Creatinase/aminopeptidase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain NAD(P)-binding Rossmann-fold domains 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Tex N-terminal region-like Ribonuclease H-like 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
LysM domain LysM domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nudix Nudix 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
SH3-domain SH3-domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
PurS-like PurM C-terminal domain-like 11
Hsp33 domain HSP33 redox switch-like 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Ferredoxin reductase-like, C-terminal NADP-linked domain Creatinase/aminopeptidase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Bacterial muramidases Lysozyme-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Flavoproteins Riboflavin synthase domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex alpha/beta-Hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Translation proteins Translation proteins 11
TATA-box binding protein-like DNA-glycosylase 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
RuvA domain 2-like JAB1/MPN domain 11
CheY-binding domain of CheA CheW-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
CheW-like CheY-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Cadherin-like Cadherin-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ClpP/crotonase NfeD domain-like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Carbamate kinase-like ACT-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
TGS-like Class II aaRS ABD-related 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Nudix Thiamin phosphate synthase 11
2Fe-2S ferredoxin-like ADC-like 11
Globin-like Riboflavin synthase domain-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
PDZ domain-like ClpP/crotonase 11
Class II aaRS and biotin synthetases Translation proteins 11
Globin-like Clavaminate synthase-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Ribbon-helix-helix ALDH-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
GAF domain-like CheY-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Single hybrid motif Single hybrid motif 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Fucose-specific lectin Fucose-specific lectin 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
NTF2-like Acyl-CoA binding protein 11
MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Translation proteins PRC-barrel domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
6-phosphogluconate dehydrogenase C-terminal domain-like Nucleotide-binding domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
PIN domain-like Ribonuclease H-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Formyltransferase FMT C-terminal domain-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Nucleotide-diphospho-sugar transferases EspE N-terminal domain-like 11
PH0987 N-terminal domain-like Single hybrid motif 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Trigger factor ribosome-binding domain FKBP-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
CBS-domain pair MgtE membrane domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Single hybrid motif alpha/beta-Hydrolases 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
LmbE-like Fucose-specific lectin 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PYP-like sensor domain (PAS domain) CheY-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Putative DNA-binding domain RmlC-like cupins 11
Methionine synthase domain Methionine synthase activation domain-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
ParB/Sulfiredoxin C-terminal domain of transcriptional repressors 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Cupredoxins Cytochrome c 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
2Fe-2S ferredoxin-like Bet v1-like 11
Adhesin YadA, collagen-binding domain Pili subunits 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Nucleic acid-binding proteins BRCT domain 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Thioredoxin-like Nqo1 middle domain-like 11
PLP-dependent transferases Rhodanese/Cell cycle control phosphatase 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
E set domains alpha/beta-Hydrolases 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Cysteine proteinases alpha/beta-Hydrolases 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
gp5 N-terminal domain-like Phage fibre proteins 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Periplasmic binding protein-like II Lysozyme-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
FAD-linked oxidoreductase ALDH-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
"Winged helix" DNA-binding domain Homeodomain-like 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
vWA-like TPR-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Acyl-CoA N-acyltransferases (Nat) 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
YrdC/RibB RibA-like 11
MurE/MurF N-terminal domain MurE/MurF N-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Ferritin-like HAD-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Periplasmic binding protein-like II ACT-like 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Globin-like Nucleotide cyclase 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Homeodomain-like DNA-glycosylase 11
FKBP-like FKBP-like 11
RNase III domain-like dsRNA-binding domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Tex N-terminal region-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
RmlC-like cupins RmlC-like cupins 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
alpha/beta-Hydrolases Acyl-CoA binding protein 11
ACP-like alpha/beta-Hydrolases 11
Nucleotidylyl transferase YegP-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
PIN domain-like DNA/RNA polymerases 11
Rudiment single hybrid motif Cyclophilin-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleic acid-binding proteins PheT/TilS domain 11
GAF domain-like EAL domain-like 11
RuvA domain 2-like BRCT domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Carbamate kinase-like PUA domain-like 11
KorB DNA-binding domain-like C-terminal domain of transcriptional repressors 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Alkaline phosphatase-like Concanavalin A-like lectins/glucanases 11
Translation proteins "Winged helix" DNA-binding domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
ABC transporter transmembrane region ABC transporter transmembrane region 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
PurS-like Class I glutamine amidotransferase-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Ribonuclease H-like RuvA domain 2-like 11
Chorismate mutase II ACT-like 11
Homeodomain-like TATA-box binding protein-like 11
Pectin lyase-like Adhesin YadA, collagen-binding domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
Metallo-dependent phosphatases Concanavalin A-like lectins/glucanases 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
CBS-domain pair Nucleotide cyclase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
NTF2-like FAD/NAD(P)-binding domain 11
Tautomerase/MIF FAH 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
ACT-like Formyltransferase 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Thiolase-like Heme oxygenase-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Autotransporter Formin homology 2 domain (FH2 domain) 11
Chorismate mutase II Periplasmic binding protein-like II 11
Lysozyme-like LysM domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
PLP-dependent transferases PLP-dependent transferases 11
EAL domain-like CBS-domain pair 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
HAMP domain-like GAF domain-like 11
UROD/MetE-like UROD/MetE-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Subtilisin-like Autotransporter 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Adhesin YadA, collagen-binding domain Autotransporter 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DNA-glycosylase Nudix 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Class II aaRS and biotin synthetases GAD domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
YajQ-like YajQ-like 11
Cytochrome P450 Riboflavin synthase domain-like 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
beta-Roll beta-Roll 11
"Winged helix" DNA-binding domain MOP-like 11
Pectin lyase-like Formin homology 2 domain (FH2 domain) 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
GAF domain-like HlyD-like secretion proteins 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Clc chloride channel CBS-domain pair 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Nucleic acid-binding proteins NAD(P)-binding Rossmann-fold domains 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Cyclophilin-like Cyclophilin-like 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Macro domain-like Zn-dependent exopeptidases 11
MgtE N-terminal domain-like CBS-domain pair 11
Homodimeric domain of signal transducing histidine kinase Periplasmic binding protein-like II 11
ACP-like Trimeric LpxA-like enzymes 11
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PreATP-grasp domain PreATP-grasp domain 11
RmlC-like cupins Rhodanese/Cell cycle control phosphatase 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Barwin-like endoglucanases Sporulation related repeat 11
Phage tail proteins Phage fibre proteins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Actin-like ATPase domain HD-domain/PDEase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
"Winged helix" DNA-binding domain Fic-like 11
CheY-like Nucleotide cyclase 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Actin-like ATPase domain Acyl-CoA N-acyltransferases (Nat) 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
TGS-like Class II aaRS and biotin synthetases 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Nucleotidyltransferase Nucleotidyltransferase 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
Single hybrid motif FAD/NAD(P)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
CheC-like Surface presentation of antigens (SPOA) 11
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Riboflavin synthase domain-like Creatinase/aminopeptidase 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Ferritin-like Calcium ATPase, transduction domain A 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Ribosomal protein L6 Ribosomal protein L6 11
Cytochrome P450 2Fe-2S ferredoxin-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Homeodomain-like Probable bacterial effector-binding domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Nucleotide-diphospho-sugar transferases 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Putative DNA-binding domain Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
NAD(P)-binding Rossmann-fold domains Nucleotide-binding domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
DNA methylase specificity domain DNA methylase specificity domain 11
PurS-like FGAM synthase PurL, linker domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
TGS-like ThrRS/AlaRS common domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Putative DNA-binding domain lambda repressor-like DNA-binding domains 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases Homeodomain-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Galactose mutarotase-like (Trans)glycosidases 11
UraD-Like Zn-dependent exopeptidases 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]