SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Candidatus Zinderia insecticola CARI

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

97 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 44
P-loop containing nucleoside triphosphate hydrolases Translation proteins 44
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
EF-G C-terminal domain-like EF-G C-terminal domain-like 22
Translation proteins EF-G C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 22
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
DNA clamp DNA clamp 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Zinc beta-ribbon DNA primase core 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Putative DNA-binding domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
L30e-like alpha/beta knot 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Thiolase-like Thiolase-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
RNase III domain-like dsRNA-binding domain-like 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Translation proteins Translation proteins 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Nucleic acid-binding proteins Translation proteins SH3-like domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Folate-binding domain TrmE connector domain 11
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Nucleic acid-binding proteins GAD domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
tRNA-binding arm Class II aaRS and biotin synthetases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 11
GroEL-intermediate domain like GroEL apical domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 11
Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Single hybrid motif CoA-dependent acyltransferases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Actin-like ATPase domain Actin-like ATPase domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
UROD/MetE-like UROD/MetE-like 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleic acid-binding proteins Nucleic acid-binding proteins 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11

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