SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Moraxella catarrhalis RH4

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).

Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

494 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1612
Actin-like ATPase domain Actin-like ATPase domain 93
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 81
P-loop containing nucleoside triphosphate hydrolases Translation proteins 75
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 74
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 64
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
CheY-like C-terminal effector domain of the bipartite response regulators 61
Thiolase-like Thiolase-like 51
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 53
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 54
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 55
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
Alpha-L RNA-binding motif Pseudouridine synthase 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 42
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
Thioredoxin-like GST C-terminal domain-like 41
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 44
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Nucleotidyltransferase HD-domain/PDEase-like 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 33
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Translation proteins EF-G C-terminal domain-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
PurM N-terminal domain-like PurM C-terminal domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
RuvA domain 2-like Nucleic acid-binding proteins 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 32
PreATP-grasp domain Rudiment single hybrid motif 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Adhesin YadA, collagen-binding domain Pili subunits 32
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
ACT-like ACT-like 33
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Lysozyme-like PGBD-like 22
Nucleotidyltransferase ACT-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Single hybrid motif CoA-dependent acyltransferases 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
Cytochrome c Cytochrome c 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Calcium ATPase, transduction domain A HAD-like 22
OMPA-like OMPA-like 21
L30e-like alpha/beta knot 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Phage fibre proteins Pili subunits 21
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
HD-domain/PDEase-like ACT-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
HMA, heavy metal-associated domain HAD-like 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Actin-like ATPase domain HD-domain/PDEase-like 21
HAD-like Calcium ATPase, transmembrane domain M 22
HD-domain/PDEase-like TGS-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Phage fibre proteins Adhesin YadA, collagen-binding domain 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
PDZ domain-like ClpP/crotonase 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Nucleotidyltransferase TGS-like 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Thioredoxin-like Mss4-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Acid phosphatase/Vanadium-dependent haloperoxidase Autotransporter 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Nucleotidylyl transferase Nudix 11
Nucleic acid-binding proteins GAD domain-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
OMPA-like OmpA-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins BRCT domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
TSP type-3 repeat OmpA-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
ValRS/IleRS/LeuRS editing domain ValRS/IleRS/LeuRS editing domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Trimeric adhesin Trimeric adhesin 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
RuvA domain 2-like RuvA domain 2-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
FAD-linked oxidoreductase ALDH-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PPK N-terminal domain-like PHP14-like 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Acyl-CoA N-acyltransferases (Nat) Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
lambda repressor-like DNA-binding domains PLP-dependent transferases 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
DNA-glycosylase Nudix 11
Tex N-terminal region-like RuvA domain 2-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
TGS-like Class II aaRS ABD-related 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Chorismate mutase II Periplasmic binding protein-like II 11
Ribonuclease H-like DNA/RNA polymerases 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Carbamate kinase-like ACT-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
TGS-like Class II aaRS and biotin synthetases 11
Acyl-CoA N-acyltransferases (Nat) Nucleotidylyl transferase 11
Translation proteins PRC-barrel domain 11
PheT/TilS domain Putative DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Chorismate mutase II ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
Translation proteins Translation proteins 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
PLP-dependent transferases PLP-dependent transferases 11
TGS-like ACT-like 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Adhesin YadA, collagen-binding domain Trimeric adhesin 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
MOP-like MOP-like 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PHP domain-like AF1531-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
YrdC/RibB RibA-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Nudix Thiamin phosphate synthase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
PIN domain-like Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
MFS general substrate transporter MFS general substrate transporter 11
PurS-like FGAM synthase PurL, linker domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
TPR-like TPR-like 11
HCP-like HCP-like 11
PIN domain-like DNA/RNA polymerases 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Translation proteins ThrRS/AlaRS common domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
OMPA-like TSP type-3 repeat 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Homodimeric domain of signal transducing histidine kinase CheY-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
DNA clamp DNA clamp 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins PheT/TilS domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
PDZ domain-like PDZ domain-like 11
Cupredoxins Cupredoxins 11
GroES-like GroES-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
YajQ-like YajQ-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PreATP-grasp domain PreATP-grasp domain 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Ribonuclease H-like Ribonuclease H-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Aldolase post-HMGL domain-like 11
Putative DNA-binding domain Translation proteins 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
CarD-like TRCF domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Lysozyme-like LysM domain 11
Trigger factor ribosome-binding domain FKBP-like 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Peptide methionine sulfoxide reductase Mss4-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
LysM domain LysM domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Hsp33 domain HSP33 redox switch-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Ribosomal protein L6 Ribosomal protein L6 11
YjeF N-terminal domain-like Ribokinase-like 11
Nqo5-like HydB/Nqo4-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
MetI-like MetI-like 11
ValRS/IleRS/LeuRS editing domain Acyl-CoA N-acyltransferases (Nat) 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
TTHA1013/TTHA0281-like lambda repressor-like DNA-binding domains 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Thioredoxin-like Peptide methionine sulfoxide reductase 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
SGNH hydrolase Autotransporter 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
TPR-like HCP-like 11
Periplasmic binding protein-like II ACT-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
PurS-like PurM C-terminal domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
RuvA domain 2-like BRCT domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Tex N-terminal region-like Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PHP14-like Phospholipase D/nuclease 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 11
PurS-like Class I glutamine amidotransferase-like 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Trypsin-like serine proteases PDZ domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
TGS-like ThrRS/AlaRS common domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Formyltransferase FMT C-terminal domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Rubredoxin-like FAD/NAD(P)-binding domain 11
PUA domain-like alpha/beta knot 11
HMA, heavy metal-associated domain Cation efflux protein transmembrane domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Zinc beta-ribbon DNA primase core 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
NTF2-like Sec-C motif 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
RNase III domain-like dsRNA-binding domain-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
HRDC-like HRDC-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Ribonuclease H-like HRDC-like 11
PurS-like PurM N-terminal domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Zinc beta-ribbon Zinc beta-ribbon 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
FKBP-like FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Single hybrid motif Single hybrid motif 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
JAB1/MPN domain Cysteine proteinases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Macro domain-like Zn-dependent exopeptidases 11
Thioredoxin-like Thioredoxin-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Cupredoxins Cytochrome c 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
HisI-like all-alpha NTP pyrophosphatases 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease H-like RuvA domain 2-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Trimeric adhesin Pili subunits 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Bacterial muramidases Lysozyme-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
LysM domain Sporulation related repeat 11
Pseudouridine synthase PUA domain-like 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]