SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Brevundimonas subvibrioides ATCC 15264

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

586 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4021
Homodimeric domain of signal transducing histidine kinase CheY-like 2012
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 2012
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1514
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1511
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 143
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1312
GroES-like NAD(P)-binding Rossmann-fold domains 122
Thioredoxin-like GST C-terminal domain-like 121
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 113
CheY-like C-terminal effector domain of the bipartite response regulators 111
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 111
Thiolase-like Thiolase-like 101
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 104
Actin-like ATPase domain Actin-like ATPase domain 104
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 102
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 95
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 99
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 93
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 82
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 71
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
PYP-like sensor domain (PAS domain) CheY-like 77
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 64
cAMP-binding domain-like "Winged helix" DNA-binding domain 52
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 54
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
PreATP-grasp domain Rudiment single hybrid motif 52
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 53
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 52
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 42
Calcium ATPase, transduction domain A HAD-like 43
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 43
CheY-like P-loop containing nucleoside triphosphate hydrolases 41
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 42
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 41
Alpha-L RNA-binding motif Pseudouridine synthase 42
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Triger factor/SurA peptide-binding domain-like FKBP-like 44
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 43
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 43
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 41
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
"Winged helix" DNA-binding domain GAF domain-like 41
GAF domain-like PYP-like sensor domain (PAS domain) 44
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 44
CheY-like Homeodomain-like 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
HAD-like Calcium ATPase, transmembrane domain M 43
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 43
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 31
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 33
PDZ domain-like ClpP/crotonase 33
Galactose-binding domain-like (Trans)glycosidases 33
Translation proteins EF-G C-terminal domain-like 33
ACT-like ACT-like 33
ClpP/crotonase ClpP/crotonase 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
beta-Roll beta-Roll 33
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
PLP-binding barrel Alanine racemase C-terminal domain-like 33
Starch-binding domain-like Porins 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Pentapeptide repeat-like Pentapeptide repeat-like 32
(Trans)glycosidases Glycosyl hydrolase domain 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Trypsin-like serine proteases PDZ domain-like 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
GAF domain-like CheY-like 33
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 31
L30e-like alpha/beta knot 32
PDZ domain-like PDZ domain-like 32
Nucleotide cyclase EAL domain-like 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Single hybrid motif CoA-dependent acyltransferases 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PGBD-like L,D-transpeptidase catalytic domain-like 22
DPP6 N-terminal domain-like alpha/beta-Hydrolases 21
Macro domain-like Zn-dependent exopeptidases 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
OMPA-like OmpA-like 21
CheY-like Nucleotide cyclase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Rudiment single hybrid motif Single hybrid motif 21
PGBD-like Lysozyme-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Nucleic acid-binding proteins RuvA domain 2-like 22
GroES-like GroES-like 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 21
PreATP-grasp domain Single hybrid motif 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
HlyD-like secretion proteins HlyD-like secretion proteins 22
Homeodomain-like Homeodomain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Bacterial muramidases Lysozyme-like 22
TPR-like TPR-like 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
PA domain Zn-dependent exopeptidases 21
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
MFS general substrate transporter MFS general substrate transporter 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Acid proteases Acid proteases 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 21
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Nucleotidyltransferase ACT-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
TGS-like Class II aaRS and biotin synthetases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Galactose-binding domain-like Invasin/intimin cell-adhesion fragments 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
DPP6 N-terminal domain-like PDZ domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
YlxR-like L30e-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
HRDC-like HRDC-like 11
Translation proteins Translation proteins 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
CBS-domain pair CheY-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
GroEL equatorial domain-like GroEL apical domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Nucleic acid-binding proteins BRCT domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
TGS-like ThrRS/AlaRS common domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Translation proteins PRC-barrel domain 11
DNA clamp DNA clamp 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
PheT/TilS domain Putative DNA-binding domain 11
Galactose-binding domain-like SGNH hydrolase 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Nucleotide-binding domain Nucleotide-binding domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
SGNH hydrolase Autotransporter 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
Ribonuclease H-like DNA/RNA polymerases 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
DPP6 N-terminal domain-like ClpP/crotonase 11
"Winged helix" DNA-binding domain SCP-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Putative DNA-binding domain Citrate synthase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Zinc beta-ribbon DNA primase core 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
Single hybrid motif Single hybrid motif 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Galactose-binding domain-like Galactose-binding domain-like 11
Nudix Nudix 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Tricorn protease N-terminal domain PDZ domain-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
PLP-dependent transferases Ribosomal protein S5 domain 2-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain Six-hairpin glycosidases 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
LysM domain Duplicated hybrid motif 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
NTF2-like NTF2-like 11
RuvA domain 2-like JAB1/MPN domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
YrdC/RibB RibA-like 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Resolvase-like Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
RmlC-like cupins Homeodomain-like 11
Cadherin-like Autotransporter 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Poly A polymerase C-terminal region-like ACT-like 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
HAD-like Formate/glycerate dehydrogenase catalytic domain-like 11
Ribonuclease H-like HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
YVTN repeat-like/Quinoprotein amine dehydrogenase alpha/beta-Hydrolases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Histidine-containing phosphotransfer domain, HPT domain EAL domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
PreATP-grasp domain PreATP-grasp domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
HMA, heavy metal-associated domain HAD-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Concanavalin A-like lectins/glucanases beta-Galactosidase/glucuronidase domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Single hybrid motif TK C-terminal domain-like 11
FKBP-like FKBP-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
HisI-like all-alpha NTP pyrophosphatases 11
Class II aaRS and biotin synthetases Translation proteins 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
TGS-like ACT-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
HAMP domain-like Nucleotide cyclase 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
HAD-like NAD(P)-binding Rossmann-fold domains 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
dUTPase-like dUTPase-like 11
Thioredoxin-like TPR-like 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
RuvA domain 2-like BRCT domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Homeodomain-like TATA-box binding protein-like 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
HAMP domain-like EAL domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
PP2C-like Protein kinase-like (PK-like) 11
Flavoproteins Riboflavin synthase domain-like 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
Pectin lyase-like Pectin lyase-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
MgtE N-terminal domain-like CBS-domain pair 11
CBS-domain pair MgtE membrane domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
FAD-linked oxidoreductase ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Zn-dependent exopeptidases Class I glutamine amidotransferase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CheY-like EAL domain-like 11
Zn-dependent exopeptidases Fibronectin type III 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
RNase III domain-like dsRNA-binding domain-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Carbamate kinase-like PUA domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
ACT-like Formyltransferase 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
HD-domain/PDEase-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
HD-domain/PDEase-like TGS-like 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Ferritin-like HAD-like 11
Translation proteins ThrRS/AlaRS common domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Formyltransferase FMT C-terminal domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
CheC-like Surface presentation of antigens (SPOA) 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Ribokinase-like Nucleotidylyl transferase 11
GAF domain-like Phosphohistidine domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Cadherin-like Cadherin-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
PIN domain-like Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Aldolase AFP III-like domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Concanavalin A-like lectins/glucanases Galactose-binding domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Nucleic acid-binding proteins GAD domain-like 11
CarD-like TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Galactose-binding domain-like Six-hairpin glycosidases 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
PPK N-terminal domain-like PHP14-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
Nudix "Winged helix" DNA-binding domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Photosystem II reaction centre subunit H, transmembrane region PRC-barrel domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
cAMP-binding domain-like FabD/lysophospholipase-like 11
Nucleotide-diphospho-sugar transferases Six-hairpin glycosidases 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
TGS-like Class II aaRS ABD-related 11
CheY-like CheY-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
alpha-helical ferredoxin ARM repeat 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Barwin-like endoglucanases Sporulation related repeat 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase EAL domain-like 11
GAF domain-like Homeodomain-like 11
Homodimeric domain of signal transducing histidine kinase EAL domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Carbamate kinase-like ACT-like 11
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
ISP domain Bet v1-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PIN domain-like DNA/RNA polymerases 11
vWA-like Formin homology 2 domain (FH2 domain) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
beta-Galactosidase/glucuronidase domain Invasin/intimin cell-adhesion fragments 11
Nucleic acid-binding proteins PheT/TilS domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
(Trans)glycosidases Invasin/intimin cell-adhesion fragments 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Ribosomal protein L6 Ribosomal protein L6 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
FliG FliG 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Concanavalin A-like lectins/glucanases (Trans)glycosidases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Cupredoxins Cupredoxins 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PHP14-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Cytochrome c Cytochrome c 11
DNA-glycosylase Nudix 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Radical SAM enzymes RuvA domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Nucleotidyltransferase TGS-like 11
Periplasmic binding protein-like II GlnB-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Bacterial muramidases Bacterial muramidases 11
Trigger factor ribosome-binding domain FKBP-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like alpha/beta knot 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
"Winged helix" DNA-binding domain HRDC-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
CBS-domain pair Homodimeric domain of signal transducing histidine kinase 11
HAD-like ACT-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Tricorn protease N-terminal domain ClpP/crotonase 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11

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