SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Shigella dysenteriae Sd197

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

716 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2915
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 292
Actin-like ATPase domain Actin-like ATPase domain 176
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 159
CheY-like C-terminal effector domain of the bipartite response regulators 141
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 131
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 135
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 126
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 126
Homeodomain-like Homeodomain-like 117
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 115
GroES-like NAD(P)-binding Rossmann-fold domains 102
Thioredoxin-like GST C-terminal domain-like 91
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 81
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 82
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 83
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 83
P-loop containing nucleoside triphosphate hydrolases Translation proteins 87
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 81
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 71
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 64
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 61
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 64
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
ACT-like ACT-like 65
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 62
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 63
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 54
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 52
P-loop containing nucleoside triphosphate hydrolases MOP-like 51
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 55
Phospholipase D/nuclease Phospholipase D/nuclease 53
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 53
CBS-domain pair FAD-binding/transporter-associated domain-like 51
PurM N-terminal domain-like PurM C-terminal domain-like 52
Homodimeric domain of signal transducing histidine kinase CheY-like 55
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
Thiolase-like Thiolase-like 51
Nucleic acid-binding proteins Nucleic acid-binding proteins 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 53
Alpha-L RNA-binding motif Pseudouridine synthase 51
PreATP-grasp domain Rudiment single hybrid motif 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 43
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 42
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
TrkA C-terminal domain-like TrkA C-terminal domain-like 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Pectin lyase-like Autotransporter 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 42
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
Nucleotidyltransferase HD-domain/PDEase-like 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
"Winged helix" DNA-binding domain Chorismate lyase-like 31
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 31
FKBP-like Triger factor/SurA peptide-binding domain-like 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
Nqo5-like HydB/Nqo4-like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 32
PapD-like Periplasmic chaperone C-domain 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
Calcium ATPase, transduction domain A HAD-like 33
RuvA domain 2-like Nucleic acid-binding proteins 33
Trypsin-like serine proteases PDZ domain-like 32
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 33
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
"Winged helix" DNA-binding domain Actin-like ATPase domain 32
"Winged helix" DNA-binding domain GAF domain-like 31
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 33
PLP-binding barrel Alanine racemase C-terminal domain-like 32
HAD-like Calcium ATPase, transmembrane domain M 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 33
CheY-like Homeodomain-like 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
CheY-like P-loop containing nucleoside triphosphate hydrolases 31
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
Nucleotidyltransferase ACT-like 32
"Winged helix" DNA-binding domain PLP-dependent transferases 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
CheY-like Histidine-containing phosphotransfer domain, HPT domain 33
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 31
(Trans)glycosidases Glycosyl hydrolase domain 32
PDZ domain-like PDZ domain-like 32
HD-domain/PDEase-like ACT-like 32
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 33
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 33
Translation proteins EF-G C-terminal domain-like 33
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 33
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 33
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
ACT-like P-loop containing nucleoside triphosphate hydrolases 22
HMA, heavy metal-associated domain HAD-like 22
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
RmlC-like cupins Homeodomain-like 22
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 22
MOP-like MOP-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Formyltransferase FMT C-terminal domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
TGS-like ACT-like 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
TPR-like TPR-like 21
MetI-like MetI-like 21
HAMP domain-like CheY-like 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
HD-domain/PDEase-like TGS-like 21
Single hybrid motif CoA-dependent acyltransferases 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Carbamate kinase-like ACT-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
H-NS histone-like proteins H-NS histone-like proteins 21
PK beta-barrel domain-like PK C-terminal domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Homeodomain-like SIS domain 21
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
HlyD-like secretion proteins HlyD-like secretion proteins 22
Galactose mutarotase-like E set domains 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Nucleotide cyclase EAL domain-like 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Actin-like ATPase domain HD-domain/PDEase-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
alpha-helical ferredoxin Nucleotide-binding domain 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
L30e-like alpha/beta knot 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Nucleotidyltransferase TGS-like 21
Zinc beta-ribbon Zinc beta-ribbon 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
E set domains (Trans)glycosidases 22
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Cupredoxins Cupredoxins 21
4Fe-4S ferredoxins Radical SAM enzymes 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
E set domains alpha/beta-Hydrolases 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
FMN-binding split barrel UbiD C-terminal domain-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
2Fe-2S ferredoxin-like ADC-like 11
Hsp33 domain HSP33 redox switch-like 11
Translation proteins "Winged helix" DNA-binding domain 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
CheY-like CheY-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
4Fe-4S ferredoxins ADC-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
CheY-like PLP-dependent transferases 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Periplasmic binding protein-like II GlnB-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
DNA-glycosylase Nudix 11
Periplasmic binding protein-like II ACT-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
FKBP-like FKBP-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Barwin-like endoglucanases Sporulation related repeat 11
UROD/MetE-like UROD/MetE-like 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
RuvA domain 2-like BRCT domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Band 7/SPFH domain Band 7/SPFH domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
ACP-like alpha/beta-Hydrolases 11
Periplasmic binding protein-like II CheY-like 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PLP-dependent transferases PLP-dependent transferases 11
PTS system IIB component-like PTS system IIB component-like 11
Chorismate mutase II ACT-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
PPK N-terminal domain-like PHP14-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
MFS general substrate transporter MFS general substrate transporter 11
FMT C-terminal domain-like NAD(P)-binding Rossmann-fold domains 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Galactose-binding domain-like Galactose mutarotase-like 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
YajQ-like YajQ-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
PurS-like PurM N-terminal domain-like 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
LysM domain Duplicated hybrid motif 11
Calcium ATPase, transmembrane domain M Sm-like ribonucleoproteins 11
E set domains E set domains 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Flavoproteins Rubredoxin-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
"Winged helix" DNA-binding domain MOP-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
PTS system fructose IIA component-like PTS IIb component 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Glucose permease domain IIB Duplicated hybrid motif 11
PYP-like sensor domain (PAS domain) CheY-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
Globin-like Riboflavin synthase domain-like 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Periplasmic binding protein-like I Homeodomain-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
PreATP-grasp domain PreATP-grasp domain 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
Pseudouridine synthase PUA domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PurS-like PurM C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
RuvA domain 2-like RuvA domain 2-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
TGS-like Class II aaRS ABD-related 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
DNA-binding domain DNA breaking-rejoining enzymes 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif Single hybrid motif 11
E set domains Glycosyl hydrolase domain 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
MOSC N-terminal domain-like 2Fe-2S ferredoxin-like 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
Putative DNA-binding domain Translation proteins 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Cysteine proteinases PreATP-grasp domain 11
Integrin alpha N-terminal domain beta-Roll 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Translation proteins ThrRS/AlaRS common domain 11
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
PreATP-grasp domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
ACT-like Homeodomain-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
GAF domain-like Phosphohistidine domain 11
MFS general substrate transporter Proline/betaine transporter ProP, C-terminal cytoplasmic domain 11
Nudix Nudix 11
ACT-like Formyltransferase 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
HAD-like Ribosomal protein S5 domain 2-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Translation proteins Translation proteins 11
Carbamate kinase-like PUA domain-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins GAD domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Homeodomain-like Probable bacterial effector-binding domain 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
PurS-like Class I glutamine amidotransferase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
CoA-dependent acyltransferases ACP-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Homeodomain-like NagB/RpiA/CoA transferase-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Ankyrin repeat 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Macro domain-like Zn-dependent exopeptidases 11
HCP-like HCP-like 11
NAD(P)-binding Rossmann-fold domains Bet v1-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
(Trans)glycosidases Galactose mutarotase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
CarD-like TRCF domain-like 11
Bacterial muramidases Lysozyme-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
PUA domain-like alpha/beta knot 11
YdgH-like YdgH-like 11
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Ribonuclease H-like DNA/RNA polymerases 11
Bacterial muramidases Periplasmic binding protein-like I 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
4Fe-4S ferredoxins Nucleotide-binding domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Acyl-CoA N-acyltransferases (Nat) Thioesterase/thiol ester dehydrase-isomerase 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Lysozyme-like LysM domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Putative DNA-binding domain 11
Acetyl-CoA synthetase-like ACP-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
Phosphoenolpyruvate/pyruvate domain Phoshotransferase/anion transport protein 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
NTF2-like Sec-C motif 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
HIT-like HIT-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
Ribonuclease H-like Homeodomain-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
ACT-like PYP-like sensor domain (PAS domain) 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
YgfB-like Sec-C motif 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
GAF domain-like Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
"Winged helix" DNA-binding domain MukF C-terminal domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
PDZ domain-like ClpP/crotonase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
HisI-like all-alpha NTP pyrophosphatases 11
Nucleotidylyl transferase tRNA-binding arm 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Homeodomain-like TrpR-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
GspK insert domain-like GspK insert domain-like 11
CRISPR-associated protein CRISPR-associated protein 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
OMPA-like OmpA-like 11
PurS-like FGAM synthase PurL, linker domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Ribonuclease H-like RuvA domain 2-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Cytidine deaminase-like Cytidine deaminase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PIN domain-like DNA/RNA polymerases 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nucleic acid-binding proteins BRCT domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
SIS domain CBS-domain pair 11
Galactose-binding domain-like (Trans)glycosidases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
lambda repressor-like DNA-binding domains Nucleotidylyl transferase 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Ribokinase-like Nucleotidylyl transferase 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein L6 Ribosomal protein L6 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
PHP14-like Phospholipase D/nuclease 11
Ribbon-helix-helix ACT-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Metallo-hydrolase/oxidoreductase Rubredoxin-like 11
ClpP/crotonase ClpP/crotonase 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Periplasmic binding protein-like II Lysozyme-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Zinc beta-ribbon DNA primase core 11
ALDH-like Dehydroquinate synthase-like 11
Resolvase-like Homeodomain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
GAF domain-like Nucleotide cyclase 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Regulatory protein AraC Homeodomain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Flavoproteins Riboflavin synthase domain-like 11
Bacterial adhesins Bacterial adhesins 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
TGS-like ThrRS/AlaRS common domain 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
AhpD-like AhpD-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Thioredoxin-like TPR-like 11
Phoshotransferase/anion transport protein HPr-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
TTHA1013/TTHA0281-like lambda repressor-like DNA-binding domains 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Formyltransferase NAD(P)-binding Rossmann-fold domains 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
EPT/RTPC-like EPT/RTPC-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like Thioredoxin-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Nucleotidyltransferase Nucleotidyltransferase 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
TATA-box binding protein-like DNA-glycosylase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
DNA clamp DNA clamp 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
MesJ substrate recognition domain-like PheT/TilS domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
ISP domain Bet v1-like 11
CheY-like Ornithine decarboxylase C-terminal domain 11
Phosphohistidine domain Phoshotransferase/anion transport protein 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
LysM domain LysM domain 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Isochorismatase-like hydrolases ACP-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
GroES-like GroES-like 11
Adhesin YadA, collagen-binding domain Pili subunits 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases EspE N-terminal domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like Ribonuclease H-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Trigger factor ribosome-binding domain FKBP-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
DeoB insert domain-like Alkaline phosphatase-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Ribonuclease H-like HRDC-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Translation proteins PRC-barrel domain 11
4Fe-4S ferredoxins Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
Class II aaRS and biotin synthetases SufE/NifU 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Calcium ATPase, transmembrane domain M Mechanosensitive channel protein MscS (YggB), transmembrane region 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Class II aaRS and biotin synthetases GAD domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
ABC transporter transmembrane region ABC transporter transmembrane region 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
"Winged helix" DNA-binding domain Ribokinase-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
HRDC-like HRDC-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Cysteine proteinases Glutathione synthetase ATP-binding domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phoshotransferase/anion transport protein 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Tex N-terminal region-like Ribonuclease H-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Methionine synthase domain Methionine synthase activation domain-like 11
Pili subunits GspK insert domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Calcium ATPase, transmembrane domain M Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11

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