SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Saccharophagus degradans 2-40

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

844 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4422
Galactose-binding domain-like Galactose-binding domain-like 2725
Galactose-binding domain-like (Trans)glycosidases 2418
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2414
Nucleotide cyclase EAL domain-like 1811
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1817
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 184
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 161
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 149
Concanavalin A-like lectins/glucanases Galactose-binding domain-like 1312
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 135
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 138
Actin-like ATPase domain Actin-like ATPase domain 125
Homodimeric domain of signal transducing histidine kinase CheY-like 1211
CheY-like C-terminal effector domain of the bipartite response regulators 122
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 124
Nucleotide cyclase CheY-like 118
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 111
CheY-like Homeodomain-like 103
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 105
Galactose-binding domain-like Pectin lyase-like 108
Thioredoxin-like GST C-terminal domain-like 101
(Trans)glycosidases Glycosyl hydrolase domain 109
PYP-like sensor domain (PAS domain) Nucleotide cyclase 109
TPR-like TPR-like 108
CheY-like P-loop containing nucleoside triphosphate hydrolases 103
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 94
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 94
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 92
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 94
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 97
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 98
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 94
Thiolase-like Thiolase-like 83
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 81
CheY-like CheY-like 87
CheY-like Histidine-containing phosphotransfer domain, HPT domain 87
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 83
PYP-like sensor domain (PAS domain) EAL domain-like 87
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 85
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 73
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 71
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 73
GroES-like NAD(P)-binding Rossmann-fold domains 72
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 74
ACT-like ACT-like 65
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 63
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
E set domains (Trans)glycosidases 66
Carbohydrate-binding domain Type X cellulose binding domain, CBDX 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Carbohydrate-binding domain (Trans)glycosidases 65
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 62
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Type X cellulose binding domain, CBDX (Trans)glycosidases 65
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 65
Homeodomain-like Homeodomain-like 65
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 62
Carbohydrate-binding domain Galactose-binding domain-like 66
Alpha-L RNA-binding motif Pseudouridine synthase 62
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 64
Cytochrome c Cytochrome c 55
CheY-like EAL domain-like 54
Translation proteins EF-G C-terminal domain-like 53
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 54
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 52
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 53
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 52
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 42
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 42
PLP-binding barrel Alanine racemase C-terminal domain-like 43
Carbohydrate binding domain (Trans)glycosidases 44
Ricin B-like lectins Galactose-binding domain-like 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 43
Histidine-containing phosphotransfer domain, HPT domain CheW-like 43
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 43
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 43
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 43
PreATP-grasp domain Rudiment single hybrid motif 42
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 42
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 42
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 44
(Trans)glycosidases Ricin B-like lectins 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
E set domains E set domains 33
Pectin lyase-like Pectin lyase-like 33
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 33
CheY-like TPR-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
(Trans)glycosidases Chitinase insertion domain 33
Cytochrome c Soluble quinoprotein glucose dehydrogenase 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
PKD domain (Trans)glycosidases 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Thiolase-like FabD/lysophospholipase-like 33
HD-domain/PDEase-like ACT-like 32
E set domains Glycosyl hydrolase domain 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
NAD(P)-binding Rossmann-fold domains ACT-like 32
Formyltransferase FMT C-terminal domain-like 32
CheW-like CheY-like 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Ricin B-like lectins Arabinanase/levansucrase/invertase 33
GAF domain-like Homodimeric domain of signal transducing histidine kinase 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Methylesterase CheB, C-terminal domain CheY-like 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
PDZ domain-like PDZ domain-like 33
Nucleotidyltransferase ACT-like 32
Starch-binding domain-like (Trans)glycosidases 33
(Trans)glycosidases Fibronectin type III 32
Calcium ATPase, transmembrane domain M HAD-like 33
PKD domain Galactose-binding domain-like 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Cadherin-like Cadherin-like 33
ACP-like NAD(P)-binding Rossmann-fold domains 33
PYP-like sensor domain (PAS domain) CheY-like 33
CoA-dependent acyltransferases CoA-dependent acyltransferases 33
TSP type-3 repeat TSP type-3 repeat 33
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 33
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Calcium ATPase, transduction domain A HAD-like 33
Lysozyme-like beta-lactamase/transpeptidase-like 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
Regulatory protein AraC Homeodomain-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
alpha/beta-Hydrolases alpha/beta-Hydrolases 32
E set domains Six-hairpin glycosidases 32
HD-domain/PDEase-like Nucleotidyltransferase 32
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 33
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Carbohydrate-binding domain E set domains 33
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 32
HAMP domain-like Nucleotide cyclase 32
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 33
HAMP domain-like EAL domain-like 32
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 32
Galactose mutarotase-like Six-hairpin glycosidases 31
Trypsin-like serine proteases PDZ domain-like 33
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 33
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
Fibronectin type III Galactose-binding domain-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Thiolase-like ACP-like 22
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Galactose-binding domain-like Cytochrome c 22
TSP type-3 repeat OmpA-like 21
Metalloproteases ("zincins"), catalytic domain Galactose-binding domain-like 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
cAMP-binding domain-like cAMP-binding domain-like 21
Ricin B-like lectins Ricin B-like lectins 22
Concanavalin A-like lectins/glucanases PKD domain 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Carbamate kinase-like ACT-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
HAMP domain-like CheY-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Carbohydrate-binding domain Pectin lyase-like 22
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 21
cAMP-binding domain-like Rhodanese/Cell cycle control phosphatase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
PP2C-like Protein kinase-like (PK-like) 21
Carbohydrate-binding domain YceI-like 22
Galactose-binding domain-like Family 10 polysaccharide lyase 22
Single hybrid motif CoA-dependent acyltransferases 22
ACP-like ACP-like 22
Nucleotidyltransferase TGS-like 21
Phage tail proteins gp5 N-terminal domain-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Fibronectin type III Cytochrome c 22
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
TGS-like ACT-like 21
Carbohydrate binding domain Chitinase insertion domain 22
Thiolase-like NAD(P)-binding Rossmann-fold domains 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
(Trans)glycosidases (Trans)glycosidases 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Cysteine proteinases TPR-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
MgtE N-terminal domain-like CBS-domain pair 21
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 22
NAD(P)-binding Rossmann-fold domains Acetyl-CoA synthetase-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
HD-domain/PDEase-like TGS-like 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
OMPA-like OmpA-like 21
SMAD/FHA domain SMAD/FHA domain 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 22
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Chalcone isomerase TolA/TonB C-terminal domain 21
Pectin lyase-like Ricin B-like lectins 22
Arabinanase/levansucrase/invertase Galactose-binding domain-like 22
"Winged helix" DNA-binding domain GAF domain-like 21
HMA, heavy metal-associated domain HAD-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Chitinase insertion domain E set domains 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
L30e-like alpha/beta knot 21
Cadherin-like OMPA-like 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
Cyclophilin-like Cyclophilin-like 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Ribonuclease H-like DNA/RNA polymerases 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 22
Galactose-binding domain-like SGNH hydrolase 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 21
Dimeric alpha+beta barrel Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
PYP-like sensor domain (PAS domain) GAF domain-like 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Cupredoxins Cupredoxins 22
PDZ domain-like ClpP/crotonase 21
Glycosyl hydrolase domain Starch-binding domain-like 22
ACP-like Acetyl-CoA synthetase-like 22
Carboxypeptidase regulatory domain-like Porins 22
OMPA-like TSP type-3 repeat 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Aldolase post-HMGL domain-like 22
FabD/lysophospholipase-like ACP-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Pectin lyase-like Concanavalin A-like lectins/glucanases 22
GroES-like GroES-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
PKD domain PKD domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
CheY-like PP2C-like 22
Homodimeric domain of signal transducing histidine kinase CheW-like 21
Galactose-binding domain-like TSP type-3 repeat 22
Galactose-binding domain-like Beta-D-glucan exohydrolase, C-terminal domain 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
CBS-domain pair MgtE membrane domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Barwin-like endoglucanases Sporulation related repeat 11
Cadherin-like Anthrax protective antigen 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
RCC1/BLIP-II RCC1/BLIP-II 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Class I glutamine amidotransferase-like RCC1/BLIP-II 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
L9 N-domain-like Ribonuclease H-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
ACT-like Formyltransferase 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Metalloproteases ("zincins"), catalytic domain gamma-Crystallin-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
Chitinase insertion domain Chitinase insertion domain 11
TPR-like SGNH hydrolase 11
YWTD domain TSP type-3 repeat 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Macro domain-like Zn-dependent exopeptidases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Putative DNA-binding domain Translation proteins 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
(Trans)glycosidases SGNH hydrolase 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
YceI-like Cytochrome c 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
HIT-like HIT-like 11
Sensory domain-like Sensory domain-like 11
Zinc beta-ribbon DNA primase core 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleotidylyl transferase tRNA-binding arm 11
Concanavalin A-like lectins/glucanases TSP type-3 repeat 11
ClpP/crotonase ClpP/crotonase 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Thioredoxin-like TPR-like 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PurS-like PurM C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Carbohydrate-binding domain Cytochrome c 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Translation proteins PRC-barrel domain 11
gp5 N-terminal domain-like Phage fibre proteins 11
Galactose mutarotase-like Anthrax protective antigen 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
RuvA domain 2-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Concanavalin A-like lectins/glucanases Glycoside hydrolase/deacetylase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
E set domains Quinoprotein alcohol dehydrogenase-like 11
TGS-like Class II aaRS ABD-related 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Beta-D-glucan exohydrolase, C-terminal domain SGNH hydrolase 11
Translation proteins ThrRS/AlaRS common domain 11
CalX-like OMPA-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
RuvA domain 2-like BRCT domain 11
Protein kinase-like (PK-like) TPR-like 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
CheC-like Surface presentation of antigens (SPOA) 11
FabD/lysophospholipase-like Acetyl-CoA synthetase-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
DNA primase core DNA primase DnaG, C-terminal domain 11
HRDC-like HRDC-like 11
Hsp33 domain HSP33 redox switch-like 11
Zn-dependent exopeptidases LysM domain 11
FliG FliG 11
GAF domain-like Phosphohistidine domain 11
Six-hairpin glycosidases Type X cellulose binding domain, CBDX 11
DNA clamp DNA clamp 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Thiolase-like CoA-dependent acyltransferases 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
PP2C-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
YVTN repeat-like/Quinoprotein amine dehydrogenase TSP type-3 repeat 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Sensory domain-like Protein kinase-like (PK-like) 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
Thiolase-like alpha/beta-Hydrolases 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
PreATP-grasp domain Single hybrid motif 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
vWA-like TPR-like 11
Cadherin-like Fibronectin type III 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Sensory domain-like HAMP domain-like 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
ACT-like HAD-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Phage tail proteins Phage tail proteins 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
UROD/MetE-like UROD/MetE-like 11
GAF domain-like CheY-like 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
TSP type-3 repeat Class I glutamine amidotransferase-like 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Periplasmic binding protein-like II MetI-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
PUA domain-like alpha/beta knot 11
PreATP-grasp domain Cyclophilin-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like Soluble quinoprotein glucose dehydrogenase 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Pili subunits Pili subunits 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Quinoprotein alcohol dehydrogenase-like TSP type-3 repeat 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Homeodomain-like Probable bacterial effector-binding domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Homodimeric domain of signal transducing histidine kinase Nucleotide cyclase 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Cadherin-like Integrin alpha N-terminal domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
YWTD domain RCC1/BLIP-II 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
PurS-like PurM N-terminal domain-like 11
LysM domain LysM domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Starch-binding domain-like E set domains 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Metalloproteases ("zincins"), catalytic domain Fibronectin type III 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
FabD/lysophospholipase-like Thioesterase/thiol ester dehydrase-isomerase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Nucleotide cyclase SMAD/FHA domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
PLP-dependent transferases PLP-dependent transferases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase alpha/beta-Hydrolases 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
FKBP-like FKBP-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase RCC1/BLIP-II 11
CarD-like TRCF domain-like 11
(Phosphotyrosine protein) phosphatases II NAD kinase/diacylglycerol kinase-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
HAMP domain-like Protein kinase-like (PK-like) 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Anthrax protective antigen Anthrax protective antigen 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Cadherin-like beta-Roll 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain PreATP-grasp domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
PIN domain-like Ribonuclease H-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Class I glutamine amidotransferase-like 11
YWTD domain Quinoprotein alcohol dehydrogenase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
CheY-like LDH C-terminal domain-like 11
YWTD domain Class I glutamine amidotransferase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Ribosomal protein L6 Ribosomal protein L6 11
Transmembrane di-heme cytochromes Cytochrome c 11
Methionine synthase domain Methionine synthase activation domain-like 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Pili subunits GspK insert domain-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Metalloproteases ("zincins"), catalytic domain Sec-C motif 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Galactose-binding domain-like Nucleoside hydrolase 11
Tex N-terminal region-like RuvA domain 2-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Thermostable phytase (3-phytase) Thermostable phytase (3-phytase) 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
CalX-like PKD domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
FMT C-terminal domain-like ClpP/crotonase 11
Lamin A/C globular tail domain Galactose-binding domain-like 11
Calcium-dependent phosphotriesterase CheY-like 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
PKD domain OMPA-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
Class I glutamine amidotransferase-like Cytochrome c 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
HMA, heavy metal-associated domain Cation efflux protein transmembrane domain-like 11
Ribokinase-like N-(deoxy)ribosyltransferase-like 11
(Trans)glycosidases Anthrax protective antigen 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Concanavalin A-like lectins/glucanases (Trans)glycosidases 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Phage tail proteins Phage fibre proteins 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
PPK N-terminal domain-like PHP14-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Aldolase Single hybrid motif 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Integrin alpha N-terminal domain OMPA-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Nucleotide cyclase 11
PHP14-like Phospholipase D/nuclease 11
Galactose-binding domain-like Homeodomain-like 11
YWTD domain YVTN repeat-like/Quinoprotein amine dehydrogenase 11
E set domains Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins GAD domain-like 11
Quinoprotein alcohol dehydrogenase-like RCC1/BLIP-II 11
Ribonuclease H-like HRDC-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
TGS-like ThrRS/AlaRS common domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
E set domains RCC1/BLIP-II 11
Cadherin-like CalX-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Integrin alpha N-terminal domain Galactose-binding domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
TSP type-3 repeat (Trans)glycosidases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Concanavalin A-like lectins/glucanases Anthrax protective antigen 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
GAF domain-like EAL domain-like 11
Ricin B-like lectins Concanavalin A-like lectins/glucanases 11
Carbohydrate-binding domain Fibronectin type III 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Nudix Nudix 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
TGS-like Class II aaRS and biotin synthetases 11
DPP6 N-terminal domain-like Starch-binding domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Carbohydrate-binding domain Family 10 polysaccharide lyase 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
PH0987 N-terminal domain-like Single hybrid motif 11
gamma-Crystallin-like Galactose-binding domain-like 11
Fibronectin type III Pectin lyase-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains CoA-dependent acyltransferases 11
Galactose-binding domain-like DNase I-like 11
YWTD domain E set domains 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
PurS-like Class I glutamine amidotransferase-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
YVTN repeat-like/Quinoprotein amine dehydrogenase YVTN repeat-like/Quinoprotein amine dehydrogenase 11
E set domains YVTN repeat-like/Quinoprotein amine dehydrogenase 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Six-hairpin glycosidases Carbohydrate-binding domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase CoA-dependent acyltransferases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
DNA-glycosylase Nudix 11
YbaK/ProRS associated domain HD-domain/PDEase-like 11
Arabinanase/levansucrase/invertase Carbohydrate-binding domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Glycosyl hydrolase domain Ricin B-like lectins 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
FabD/lysophospholipase-like alpha/beta-Hydrolases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
PurS-like FGAM synthase PurL, linker domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Class I glutamine amidotransferase-like Homeodomain-like 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
E set domains Type X cellulose binding domain, CBDX 11
PilZ domain-like PilZ domain-like 11
Thiolase-like Acetyl-CoA synthetase-like 11
Pseudouridine synthase PUA domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Arabinanase/levansucrase/invertase (Trans)glycosidases 11
Galactose-binding domain-like Carbohydrate binding domain 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
RuvA domain 2-like JAB1/MPN domain 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
beta-N-acetylhexosaminidase-like domain E set domains 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Glycosyl hydrolase domain Galactose-binding domain-like 11
Type X cellulose binding domain, CBDX Type X cellulose binding domain, CBDX 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Carbohydrate-binding domain Glycosyl hydrolases family 6, cellulases 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
GAF domain-like Homeodomain-like 11
post-HMGL domain-like Single hybrid motif 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
E set domains TSP type-3 repeat 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Quinoprotein alcohol dehydrogenase-like Class I glutamine amidotransferase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Single hybrid motif Single hybrid motif 11
Bacterial muramidases Lysozyme-like 11
Periplasmic binding protein-like II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Cadherin-like PKD domain 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Anthrax protective antigen Glycosyl hydrolase domain 11
Translation proteins Translation proteins 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
Periplasmic binding protein-like I PYP-like sensor domain (PAS domain) 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Cyclophilin-like PH0987 N-terminal domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
ACP-like alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Quinoprotein alcohol dehydrogenase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Lysozyme-like LysM domain 11
Carbamate kinase-like PUA domain-like 11
Nudix Thiamin phosphate synthase 11
Carbohydrate binding domain PKD domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
YrdC/RibB RibA-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
FMN-binding split barrel Riboflavin synthase domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Calcium-dependent phosphotriesterase Homodimeric domain of signal transducing histidine kinase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Acetyl-CoA synthetase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
CheY-like HD-domain/PDEase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
E set domains Carbohydrate binding domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Concanavalin A-like lectins/glucanases Type X cellulose binding domain, CBDX 11
Thioredoxin-like Thioredoxin-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Concanavalin A-like lectins/glucanases Cytochrome c 11
TSP type-3 repeat Cytochrome c 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
TSP type-3 repeat RCC1/BLIP-II 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Nucleic acid-binding proteins BRCT domain 11
Fibronectin type III Fibronectin type III 11
Chorismate mutase II ACT-like 11
Periplasmic binding protein-like II Lysozyme-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Carbohydrate-binding domain Nucleoside hydrolase 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
YjeF N-terminal domain-like Ribokinase-like 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
beta-N-acetylhexosaminidase-like domain Galactose-binding domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
FabD/lysophospholipase-like CoA-dependent acyltransferases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Rudiment single hybrid motif Cyclophilin-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
DPP6 N-terminal domain-like PKD domain 11
Tex N-terminal region-like Ribonuclease H-like 11
GAF domain-like Nucleotide cyclase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Pentapeptide repeat-like Nucleotide cyclase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Nudix "Winged helix" DNA-binding domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
HD-domain/PDEase-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Zinc beta-ribbon Zinc beta-ribbon 11
PRC-barrel domain PRC-barrel domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Formyltransferase ClpP/crotonase 11
YajQ-like YajQ-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Periplasmic binding protein-like II OmpA-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
TSP type-3 repeat Carboxypeptidase regulatory domain-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
PIN domain-like DNA/RNA polymerases 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
ACP-like CoA-dependent acyltransferases 11
TPR-like Porins 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Isochorismatase-like hydrolases ACP-like 11
YceI-like Fibronectin type III 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
Carbohydrate-binding domain Carbohydrate-binding domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Galactose mutarotase-like (Trans)glycosidases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Integrin alpha N-terminal domain Carbohydrate-binding domain 11
Cyclophilin-like Single hybrid motif 11
GroEL equatorial domain-like GroEL apical domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Rudiment single hybrid motif Single hybrid motif 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glycoside hydrolase/deacetylase Type X cellulose binding domain, CBDX 11
HCP-like TPR-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
GAF domain-like HlyD-like secretion proteins 11
PheT/TilS domain Putative DNA-binding domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
PKD domain Chitinase insertion domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]