SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Staphylococcus aureus

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).

Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

543 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2315
Bacterial enterotoxins Superantigen toxins, C-terminal domain 162
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 115
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 92
CheY-like C-terminal effector domain of the bipartite response regulators 91
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 92
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 81
Actin-like ATPase domain Actin-like ATPase domain 85
GroES-like NAD(P)-binding Rossmann-fold domains 81
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 86
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 74
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 61
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 63
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Bacterial adhesins Bacterial adhesins 64
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 51
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
PreATP-grasp domain Rudiment single hybrid motif 52
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 55
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 52
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 52
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 51
Thiolase-like Thiolase-like 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Phoshotransferase/anion transport protein PTS system IIB component-like 55
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 43
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 42
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 43
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 43
LysM domain Cysteine proteinases 43
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 42
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
Translation proteins EF-G C-terminal domain-like 43
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
PLP-binding barrel Alanine racemase C-terminal domain-like 41
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 41
Homeodomain-like SIS domain 41
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 44
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 33
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Single hybrid motif CoA-dependent acyltransferases 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Glucose permease domain IIB Duplicated hybrid motif 32
Homeodomain-like Homeodomain-like 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
PTS-regulatory domain, PRD PTS system IIB component-like 33
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
(Trans)glycosidases Glycosyl hydrolase domain 32
Bacterial immunoglobulin/albumin-binding domains Bacterial immunoglobulin/albumin-binding domains 33
Acyl-CoA N-acyltransferases (Nat) tRNA-binding arm 31
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
Calcium ATPase, transduction domain A HAD-like 33
Hypothetical protein PA1324 Hypothetical protein PA1324 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
"Winged helix" DNA-binding domain Chorismate lyase-like 31
Bacterial adhesins Hypothetical protein PA1324 33
HAD-like Calcium ATPase, transmembrane domain M 33
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
Phosphoenolpyruvate/pyruvate domain Phosphohistidine domain 22
Carbamate kinase-like ACT-like 21
L30e-like alpha/beta knot 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
Staphylocoagulase Staphylocoagulase 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Rhodanese/Cell cycle control phosphatase DsrEFH-like 21
Trypsin-like serine proteases PDZ domain-like 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 22
Cystatin/monellin Cysteine proteinases 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
LysM domain LysM domain 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
PH0987 N-terminal domain-like Cyclophilin-like 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
Phospholipase D/nuclease Phospholipase D/nuclease 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
Sigma2 domain of RNA polymerase sigma factors C-terminal effector domain of the bipartite response regulators 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Rhodanese/Cell cycle control phosphatase SirA-like 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
SirA-like DsrEFH-like 21
HMA, heavy metal-associated domain HAD-like 22
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 22
NEAT domain-like NEAT domain-like 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
"Winged helix" DNA-binding domain PLP-dependent transferases 21
ACT-like ACT-like 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 21
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 22
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
"Winged helix" DNA-binding domain PTS system IIB component-like 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 21
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 21
Class II aaRS and biotin synthetases SufE/NifU 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Triger factor/SurA peptide-binding domain-like FKBP-like 22
Periplasmic binding protein-like II MetI-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Resolvase-like Homeodomain-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Homeodomain-like Glycosyl hydrolase domain 11
TGS-like ThrRS/AlaRS common domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
YrdC/RibB RibA-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Serine metabolism enzymes domain ACT-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
ALDH-like Dehydroquinate synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
UROD/MetE-like UROD/MetE-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Hsp33 domain HSP33 redox switch-like 11
Regulatory protein AraC (Trans)glycosidases 11
ARM repeat Lysozyme-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Galactose mutarotase-like Hyaluronate lyase-like, C-terminal domain 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
SacY-like RNA-binding domain PTS-regulatory domain, PRD 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
PIN domain-like Ribonuclease H-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
"Winged helix" DNA-binding domain HRDC-like 11
Flavoproteins Riboflavin synthase domain-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Thioredoxin-like Thioredoxin-like 11
Tex N-terminal region-like Ribonuclease H-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
PreATP-grasp domain post-HMGL domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
Ribonuclease H-like PsbU/PolX domain-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Rhomboid-like TPR-like 11
Ribosomal protein L6 Ribosomal protein L6 11
"Winged helix" DNA-binding domain GAF domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
"Winged helix" DNA-binding domain Ribokinase-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Regulatory protein AraC Homeodomain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Sensory domain-like HAMP domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
MFS general substrate transporter ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Aldolase Single hybrid motif 11
Zinc beta-ribbon N-terminal domain of DnaB helicase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
PheT/TilS domain Putative DNA-binding domain 11
HD-domain/PDEase-like TGS-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Periplasmic binding protein-like II ACT-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PK C-terminal domain-like Phosphohistidine domain 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Bacterial immunoglobulin/albumin-binding domains LysM domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
RuvA domain 2-like BRCT domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
CBS-domain pair MgtE membrane domain-like 11
Nucleic acid-binding proteins BRCT domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
MalF N-terminal region-like MetI-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Formyltransferase FMT C-terminal domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PK beta-barrel domain-like Phosphohistidine domain 11
N-acetylmuramoyl-L-alanine amidase-like Prokaryotic SH3-related domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Homeodomain-like Probable bacterial effector-binding domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Tropomyosin ARM repeat 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
PreATP-grasp domain Single hybrid motif 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Aldolase post-HMGL domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Nucleotidyltransferase TGS-like 11
2Fe-2S ferredoxin-like ADC-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Metallo-dependent phosphatases Metallo-dependent phosphatases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PUA domain-like PUA domain-like 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
Acetyl-CoA synthetase-like ACP-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Nucleotidylyl transferase tRNA-binding arm 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Rudiment single hybrid motif Aldolase 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
4Fe-4S ferredoxins ADC-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
DeoB insert domain-like Alkaline phosphatase-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
ARM repeat Duplicated hybrid motif 11
NTF2-like Penicillin binding protein dimerisation domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
GroEL equatorial domain-like GroEL apical domain-like 11
PIN domain-like DNA/RNA polymerases 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
CarD-like TRCF domain-like 11
Translation proteins Translation proteins 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Trigger factor ribosome-binding domain FKBP-like 11
KaiA/RbsU domain PP2C-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Cadherin-like Cadherin-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
CoA-dependent acyltransferases ACP-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PreATP-grasp domain Aldolase 11
Class II aaRS and biotin synthetases GAD domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
TGS-like ACT-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Homeodomain-like (Trans)glycosidases 11
Tropomyosin Duplicated hybrid motif 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Chondroitin AC/alginate lyase Hyaluronate lyase-like, C-terminal domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
"Helical backbone" metal receptor Lipocalins 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins PRC-barrel domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
HD-domain/PDEase-like Nucleotidyltransferase 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
DNA repair protein MutS, domain III SMR domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Ribonuclease H-like RuvA domain 2-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
TGS-like Class II aaRS ABD-related 11
TPR-like TPR-like 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
HD-domain/PDEase-like ACT-like 11
Tropomyosin Lysozyme-like 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
PDZ domain-like PGBD-like 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Globin-like Riboflavin synthase domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
"Winged helix" DNA-binding domain PRTase-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
Tex N-terminal region-like RuvA domain 2-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Duplicated hybrid motif Lysozyme-like 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Translation proteins ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
DNA clamp DNA clamp 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
ClpP/crotonase PGBD-like 11
DNA primase core N-terminal domain of DnaB helicase 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
4Fe-4S ferredoxins ARM repeat 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
CheY-like Homeodomain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
(Trans)glycosidases Cyclophilin-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
ACP-like ACP-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
Macro domain-like Zn-dependent exopeptidases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidyltransferase ACT-like 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
Hypothetical protein SAV1430 ARM repeat 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
TGS-like Class II aaRS and biotin synthetases 11
DNA methylase specificity domain DNA methylase specificity domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
SMAD/FHA domain SMAD/FHA domain 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Chondroitin AC/alginate lyase Galactose mutarotase-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 11
Rudiment single hybrid motif Single hybrid motif 11
Nucleic acid-binding proteins PheT/TilS domain 11
PDZ domain-like ClpP/crotonase 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
GIY-YIG endonuclease RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
HprK N-terminal domain-like CBS-domain pair 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
PUA domain-like alpha/beta knot 11
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 11
Nucleotidyltransferase PHP domain-like 11
Zinc beta-ribbon DNA primase core 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
post-HMGL domain-like Single hybrid motif 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Concanavalin A-like lectins/glucanases Cadherin-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Ribonuclease H-like DNA/RNA polymerases 11
Nucleotide-binding domain Nucleotide-binding domain 11
Nucleic acid-binding proteins GAD domain-like 11
HisI-like all-alpha NTP pyrophosphatases 11
Regulatory protein AraC Glycosyl hydrolase domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
NTF2-like beta-lactamase/transpeptidase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
DNA-glycosylase Nudix 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PreATP-grasp domain PreATP-grasp domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Rad50 coiled-coil Zn hook 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Chorismate mutase II Aldolase 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]