SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Bordetella parapertussis 12822

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

693 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1091
"Winged helix" DNA-binding domain GAF domain-like 382
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 302
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2910
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 244
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 203
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2011
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 192
Thiolase-like Thiolase-like 183
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 172
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 176
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 145
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 141
P-loop containing nucleoside triphosphate hydrolases MOP-like 141
Thioredoxin-like GST C-terminal domain-like 131
"Winged helix" DNA-binding domain Chorismate lyase-like 132
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 121
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 123
CheY-like C-terminal effector domain of the bipartite response regulators 112
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 105
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 101
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 106
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 103
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
Homeodomain-like Ribonuclease H-like 91
Pectin lyase-like Autotransporter 95
Homeodomain-like Homeodomain-like 94
Actin-like ATPase domain Actin-like ATPase domain 94
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 95
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
Cytochrome c Cytochrome c 84
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 83
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 82
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 74
"Winged helix" DNA-binding domain PLP-dependent transferases 71
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 73
ISP domain Bet v1-like 74
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 77
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 72
GroES-like NAD(P)-binding Rossmann-fold domains 73
PreATP-grasp domain Rudiment single hybrid motif 73
Enolase N-terminal domain-like Enolase C-terminal domain-like 61
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 66
MetI-like MetI-like 62
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 52
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 52
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 52
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 53
Nucleotide cyclase EAL domain-like 54
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 52
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 52
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 52
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
Translation proteins EF-G C-terminal domain-like 53
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 52
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 53
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 52
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 53
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
Alpha-L RNA-binding motif Pseudouridine synthase 42
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 41
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 42
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 42
cAMP-binding domain-like "Winged helix" DNA-binding domain 42
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
ACT-like ACT-like 44
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 42
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 42
CheY-like Homeodomain-like 43
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 42
LeuD/IlvD-like Aconitase iron-sulfur domain 42
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 42
Phospholipase D/nuclease Phospholipase D/nuclease 43
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 31
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 31
CheY-like P-loop containing nucleoside triphosphate hydrolases 32
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Triger factor/SurA peptide-binding domain-like FKBP-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
E set domains (Trans)glycosidases 32
HAD-like Calcium ATPase, transmembrane domain M 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
(Trans)glycosidases Glycosyl hydrolase domain 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
RmlC-like cupins Homeodomain-like 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 31
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 31
Lysozyme-like beta-lactamase/transpeptidase-like 33
Calcium ATPase, transduction domain A HAD-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
Aldolase post-HMGL domain-like 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Formyltransferase FMT C-terminal domain-like 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 32
Pectin lyase-like Pectin lyase-like 33
PUA domain-like Ribosomal protein S5 domain 2-like 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
lambda repressor-like DNA-binding domains RmlC-like cupins 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
C-terminal effector domain of the bipartite response regulators TPR-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Rudiment single hybrid motif Single hybrid motif 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Homeodomain-like SIS domain 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Homodimeric domain of signal transducing histidine kinase CheY-like 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
PreATP-grasp domain Single hybrid motif 22
HD-domain/PDEase-like ACT-like 22
HMA, heavy metal-associated domain HAD-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
2Fe-2S ferredoxin-like ADC-like 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
Single hybrid motif CoA-dependent acyltransferases 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
Trypsin-like serine proteases PDZ domain-like 22
Regulatory protein AraC Homeodomain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
C-type lectin-like Bacterial enterotoxins 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Zinc beta-ribbon DNA primase core 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
4Fe-4S ferredoxins ADC-like 21
PYP-like sensor domain (PAS domain) CheY-like 22
Periplasmic binding protein-like II ACT-like 22
PDZ domain-like PDZ domain-like 22
Nucleotidyltransferase HD-domain/PDEase-like 22
L30e-like alpha/beta knot 21
ACT-like Formyltransferase 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nucleotidyltransferase ACT-like 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
ClpP/crotonase ClpP/crotonase 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
NAD(P)-binding Rossmann-fold domains ACP-like 11
Thiolase-like Heme oxygenase-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
GAF domain-like GAF domain-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Barwin-like endoglucanases Sporulation related repeat 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
MgtE N-terminal domain-like CBS-domain pair 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Nudix Thiamin phosphate synthase 11
Rudiment single hybrid motif post-HMGL domain-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
Methylglyoxal synthase-like Methylglyoxal synthase-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
CheY-like Methylesterase CheB, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
RNase III domain-like dsRNA-binding domain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Putative DNA-binding domain Translation proteins 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
GroES-like GroES-like 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
Lysozyme-like LysM domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Translation proteins Translation proteins 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Tex N-terminal region-like Ribonuclease H-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Putative DNA-binding domain lambda repressor-like DNA-binding domains 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like RuvA domain 2-like 11
PurS-like Class I glutamine amidotransferase-like 11
PH0987 N-terminal domain-like Cyclophilin-like 11
LysM domain LysM domain 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
FAD/NAD(P)-binding domain NAD(P)-binding Rossmann-fold domains 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
TGS-like ThrRS/AlaRS common domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
RmlC-like cupins Rhodanese/Cell cycle control phosphatase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
2Fe-2S ferredoxin-like Bet v1-like 11
YjgF-like YjgF-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Bacterial muramidases Lysozyme-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
DNA-glycosylase Nudix 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Nucleotidyltransferase TGS-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleic acid-binding proteins PheT/TilS domain 11
EAL domain-like CBS-domain pair 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Cadherin-like beta-Roll 11
Chorismate mutase II Periplasmic binding protein-like II 11
Carbamate kinase-like PUA domain-like 11
Phase 1 flagellin Phase 1 flagellin 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PHP14-like Phospholipase D/nuclease 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
FKBP-like FKBP-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
post-HMGL domain-like Single hybrid motif 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
TGS-like Class II aaRS and biotin synthetases 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
YegP-like YegP-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Trigger factor ribosome-binding domain FKBP-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PrpR receptor domain-like Homeodomain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
DNA clamp DNA clamp 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidyltransferase Nucleotidyltransferase 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Globin-like Riboflavin synthase domain-like 11
FAD-linked oxidoreductase ALDH-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Translation proteins PRC-barrel domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
HAMP domain-like PP2C-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Adenylylcyclase toxin (the edema factor) beta-Roll 11
Class II aaRS and biotin synthetases GAD domain-like 11
Carbamate kinase-like ACT-like 11
"Winged helix" DNA-binding domain MOP-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
MurE/MurF N-terminal domain MurE/MurF N-terminal domain 11
PPK N-terminal domain-like PHP14-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Nudix "Winged helix" DNA-binding domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PapD-like Periplasmic chaperone C-domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
TGS-like Class II aaRS ABD-related 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins GAD domain-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
CheC-like Surface presentation of antigens (SPOA) 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
EAL domain-like Homodimeric domain of signal transducing histidine kinase 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
Nucleotide cyclase Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
YajQ-like YajQ-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
CheY-binding domain of CheA CheW-like 11
Sensory domain-like Nucleotide cyclase 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
GAF domain-like HD-domain/PDEase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
vWA-like TPR-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
DNA primase core DNA primase DnaG, C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
CarD-like TRCF domain-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Acyl-CoA N-acyltransferases (Nat) FKBP-like 11
Galactose mutarotase-like (Trans)glycosidases 11
MOP-like MOP-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Tex N-terminal region-like RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Periplasmic binding protein-like II CheY-like 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Macro domain-like Zn-dependent exopeptidases 11
beta-Roll beta-Roll 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
YrdC/RibB RibA-like 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
TGS-like ACT-like 11
Hsp33 domain HSP33 redox switch-like 11
Subtilisin-like Autotransporter 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
PDZ domain-like ClpP/crotonase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Thiolase-like GroES-like 11
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
GAF domain-like CheY-like 11
HCP-like "Winged helix" DNA-binding domain 11
Thiolase-like ACP-like 11
PIN domain-like DNA/RNA polymerases 11
Ribosomal protein L6 Ribosomal protein L6 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
"Winged helix" DNA-binding domain Phospholipase D/nuclease 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
"Winged helix" DNA-binding domain SCP-like 11
PurS-like PurM C-terminal domain-like 11
E set domains Glycosyl hydrolase domain 11
vWA-like beta-Roll 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
P-loop containing nucleoside triphosphate hydrolases FdhE-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
HD-domain/PDEase-like TGS-like 11
PUA domain-like alpha/beta knot 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
CBS-domain pair MgtE membrane domain-like 11
Actin-like ATPase domain Acyl-CoA N-acyltransferases (Nat) 11
CBS-domain pair Nucleotide cyclase 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Class I glutamine amidotransferase-like Homeodomain-like 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
PK beta-barrel domain-like PK C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
alpha-helical ferredoxin Nucleotide-binding domain 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Rudiment single hybrid motif FAD/NAD(P)-binding domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Translation proteins ThrRS/AlaRS common domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
FabD/lysophospholipase-like GroES-like 11
Thiolase-like FabD/lysophospholipase-like 11
PIN domain-like Ribonuclease H-like 11
S-adenosyl-L-methionine-dependent methyltransferases GroES-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Ribbon-helix-helix ALDH-like 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PheT/TilS domain Putative DNA-binding domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
LysM domain Duplicated hybrid motif 11
RuvA domain 2-like BRCT domain 11
Sensory domain-like Sensory domain-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
PurS-like PurM N-terminal domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Formin homology 2 domain (FH2 domain) TolA/TonB C-terminal domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Aldolase 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
PurS-like FGAM synthase PurL, linker domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
FMN-binding split barrel FMN-binding split barrel 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Cupredoxins Cytochrome c 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
PreATP-grasp domain post-HMGL domain-like 11
PLP-dependent transferases PLP-dependent transferases 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Ribonuclease H-like DNA/RNA polymerases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
EAL domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
Thiolase-like Nucleic acid-binding proteins 11
FabD/lysophospholipase-like ACP-like 11
TPR-like TPR-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Cadherin-like Cadherin-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Chorismate mutase II ACT-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Cadherin-like vWA-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Cupredoxins Cupredoxins 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Nucleotidylyl transferase YegP-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Type III secretion system domain Type III secretion system domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Nucleotidylyl transferase tRNA-binding arm 11
CheY-like EAL domain-like 11
Putative DNA-binding domain RmlC-like cupins 11
UROD/MetE-like UROD/MetE-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Single hybrid motif Single hybrid motif 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
FliG FliG 11
Rudiment single hybrid motif Aldolase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
Aldolase Single hybrid motif 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Flavoproteins Riboflavin synthase domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
PreATP-grasp domain PreATP-grasp domain 11
GroES-like ACP-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Globin-like Nucleotide cyclase 11
Homeodomain-like Probable bacterial effector-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
MFS general substrate transporter MFS general substrate transporter 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleotide cyclase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Lysozyme-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11

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