SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Bordetella bronchiseptica RB50

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

724 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1421
"Winged helix" DNA-binding domain GAF domain-like 451
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3510
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 352
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 323
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 306
Thiolase-like Thiolase-like 243
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 232
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2311
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 222
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 217
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 175
P-loop containing nucleoside triphosphate hydrolases MOP-like 171
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 161
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 154
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 147
"Winged helix" DNA-binding domain Chorismate lyase-like 142
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 131
Thioredoxin-like GST C-terminal domain-like 131
CheY-like C-terminal effector domain of the bipartite response regulators 132
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 131
ISP domain Bet v1-like 125
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 124
Pectin lyase-like Autotransporter 127
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 125
Homeodomain-like Homeodomain-like 115
GroES-like NAD(P)-binding Rossmann-fold domains 113
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 105
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 102
Actin-like ATPase domain Actin-like ATPase domain 104
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
Cytochrome c Cytochrome c 95
PreATP-grasp domain Rudiment single hybrid motif 93
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 93
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 93
"Winged helix" DNA-binding domain PLP-dependent transferases 92
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 93
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 93
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 94
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 93
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 93
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 87
MetI-like MetI-like 82
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 84
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 73
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 73
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 76
Enolase N-terminal domain-like Enolase C-terminal domain-like 71
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 74
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 72
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 73
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 72
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 73
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 73
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 61
Phospholipase D/nuclease Phospholipase D/nuclease 63
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 62
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 62
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 64
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 52
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 52
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
Translation proteins EF-G C-terminal domain-like 53
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 51
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 53
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 53
EAL domain-like Nucleotide cyclase 54
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 42
CheY-like Homeodomain-like 43
PLP-binding barrel Alanine racemase C-terminal domain-like 42
lambda repressor-like DNA-binding domains RmlC-like cupins 42
PurM N-terminal domain-like PurM C-terminal domain-like 42
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 42
HAD-like Calcium ATPase, transmembrane domain M 43
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
Calcium ATPase, transduction domain A HAD-like 43
RmlC-like cupins Homeodomain-like 42
(Trans)glycosidases Glycosyl hydrolase domain 44
ACT-like ACT-like 44
Aconitase iron-sulfur domain LeuD/IlvD-like 42
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
cAMP-binding domain-like "Winged helix" DNA-binding domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Alpha-L RNA-binding motif Pseudouridine synthase 42
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Triger factor/SurA peptide-binding domain-like FKBP-like 33
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 31
CheY-like P-loop containing nucleoside triphosphate hydrolases 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
C-type lectin-like Bacterial enterotoxins 31
Lysozyme-like beta-lactamase/transpeptidase-like 33
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
ClpP/crotonase ClpP/crotonase 31
Nucleotidyltransferase ACT-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Pectin lyase-like Pectin lyase-like 33
E set domains (Trans)glycosidases 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 32
ADC-like 2Fe-2S ferredoxin-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Single hybrid motif CoA-dependent acyltransferases 32
HD-domain/PDEase-like ACT-like 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
Formate dehydrogenase/DMSO reductase, domains 1-3 2Fe-2S ferredoxin-like 32
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Aldolase post-HMGL domain-like 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
HD-domain/PDEase-like Nucleotidyltransferase 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 32
C-terminal effector domain of the bipartite response regulators TPR-like 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 21
Periplasmic binding protein-like II ACT-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
Regulatory protein AraC Homeodomain-like 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 21
PreATP-grasp domain Single hybrid motif 22
PH0987 N-terminal domain-like Cyclophilin-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
His-Me finger endonucleases DNA-binding domain 21
HD-domain/PDEase-like TGS-like 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Translation proteins Ribosomal protein S5 domain 2-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
TGS-like ACT-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Pentapeptide repeat-like Pentapeptide repeat-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
Homodimeric domain of signal transducing histidine kinase CheY-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
PUA domain-like Ribosomal protein S5 domain 2-like 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
4Fe-4S ferredoxins ADC-like 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
E set domains Glycosyl hydrolase domain 22
L30e-like alpha/beta knot 21
Formyltransferase FMT C-terminal domain-like 21
Class I glutamine amidotransferase-like Homeodomain-like 21
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
HMA, heavy metal-associated domain HAD-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
Trypsin-like serine proteases PDZ domain-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
Rudiment single hybrid motif Single hybrid motif 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
TPR-like TPR-like 22
PYP-like sensor domain (PAS domain) CheY-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
PYP-like sensor domain (PAS domain) Nucleotide cyclase 22
Homeodomain-like SIS domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Phage tail proteins Phage tail proteins 22
Nucleotidyltransferase TGS-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
PDZ domain-like PDZ domain-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Tex N-terminal region-like RuvA domain 2-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
Nucleotide cyclase Homodimeric domain of signal transducing histidine kinase 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PHP14-like Phospholipase D/nuclease 11
UROD/MetE-like UROD/MetE-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
TGS-like Class II aaRS and biotin synthetases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
C-terminal effector domain of the bipartite response regulators Nucleotide cyclase 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Putative DNA-binding domain Translation proteins 11
PreATP-grasp domain Aldolase 11
gp5 N-terminal domain-like Phage fibre proteins 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Ribonuclease H-like RuvA domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
PUA domain-like alpha/beta knot 11
vWA-like TPR-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Lysozyme-like LysM domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
"Winged helix" DNA-binding domain Phospholipase D/nuclease 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Sensory domain-like Sensory domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
TPR-like Porins 11
CheY-like Methylesterase CheB, C-terminal domain 11
MFS general substrate transporter MFS general substrate transporter 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
(Trans)glycosidases (Trans)glycosidases 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
YegP-like YegP-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Cupredoxins Cupredoxins 11
Trigger factor ribosome-binding domain FKBP-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Chorismate mutase II ACT-like 11
GroES-like ACP-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
GAF domain-like CheY-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Homeodomain-like Probable bacterial effector-binding domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
Rudiment single hybrid motif Aldolase 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Thiolase-like GroES-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Cupredoxins Cytochrome c 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
post-HMGL domain-like Single hybrid motif 11
TPR-like Nucleotide cyclase 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
ACT-like Formyltransferase 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Flavoproteins Riboflavin synthase domain-like 11
PrpR receptor domain-like Homeodomain-like 11
S-adenosyl-L-methionine-dependent methyltransferases GroES-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Phase 1 flagellin Phase 1 flagellin 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
P-loop containing nucleoside triphosphate hydrolases FdhE-like 11
Thiolase-like Heme oxygenase-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Galactose mutarotase-like (Trans)glycosidases 11
YrdC/RibB RibA-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
CheC-like Surface presentation of antigens (SPOA) 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
PheT/TilS domain Putative DNA-binding domain 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
EAL domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Ribbon-helix-helix ALDH-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PapD-like Periplasmic chaperone C-domain 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Bacterial muramidases Lysozyme-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
LysM domain LysM domain 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
PreATP-grasp domain PreATP-grasp domain 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Formin homology 2 domain (FH2 domain) Pectin lyase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
YjgF-like YjgF-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FKBP-like FKBP-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
YajQ-like YajQ-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
EAL domain-like Homodimeric domain of signal transducing histidine kinase 11
RuvA domain 2-like RuvA domain 2-like 11
GAF domain-like HD-domain/PDEase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Adenylylcyclase toxin (the edema factor) beta-Roll 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
MOP-like MOP-like 11
RmlC-like cupins Rhodanese/Cell cycle control phosphatase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Lysozyme-like PGBD-like 11
Phage fibre proteins Phage fibre proteins 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide cyclase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Aldolase Single hybrid motif 11
Putative DNA-binding domain lambda repressor-like DNA-binding domains 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Phage tail proteins gp5 N-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
CarD-like TRCF domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
PurS-like FGAM synthase PurL, linker domain 11
Type III secretion system domain Type III secretion system domain 11
ClpP/crotonase NfeD domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Actin-like ATPase domain Acyl-CoA N-acyltransferases (Nat) 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Caspase-like 11
Thiolase-like ACP-like 11
Carbamate kinase-like PUA domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Translation proteins PRC-barrel domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
Cadherin-like vWA-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
ADC-like Riboflavin synthase domain-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Nudix Thiamin phosphate synthase 11
Nucleic acid-binding proteins GAD domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
"Winged helix" DNA-binding domain MOP-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PIN domain-like DNA/RNA polymerases 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
HAMP domain-like PP2C-like 11
CBS-domain pair MgtE membrane domain-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Hsp33 domain HSP33 redox switch-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
CheY-like EAL domain-like 11
Putative DNA-binding domain RmlC-like cupins 11
GIY-YIG endonuclease RuvA domain 2-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Periplasmic binding protein-like II CheY-like 11
PurS-like Class I glutamine amidotransferase-like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Nucleic acid-binding proteins BRCT domain 11
Zinc beta-ribbon DNA primase core 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Translation proteins ThrRS/AlaRS common domain 11
Acyl-CoA N-acyltransferases (Nat) FKBP-like 11
"Winged helix" DNA-binding domain SCP-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
CheY-binding domain of CheA CheW-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Single hybrid motif Single hybrid motif 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
PLP-dependent transferases PLP-dependent transferases 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Barwin-like endoglucanases Sporulation related repeat 11
DNA-glycosylase Nudix 11
FAD/NAD(P)-binding domain NAD(P)-binding Rossmann-fold domains 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
AhpD-like NAD(P)-binding Rossmann-fold domains 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Globin-like Riboflavin synthase domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
vWA-like beta-Roll 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
TGS-like ThrRS/AlaRS common domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Macro domain-like Zn-dependent exopeptidases 11
GroES-like GroES-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleotidylyl transferase YegP-like 11
beta-Roll beta-Roll 11
RNase III domain-like dsRNA-binding domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Nudix "Winged helix" DNA-binding domain 11
EAL domain-like CBS-domain pair 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Cadherin-like beta-Roll 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
AhpD-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Cadherin-like Cadherin-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Sensory domain-like Nucleotide cyclase 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
CBS-domain pair Nucleotide cyclase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
GAF domain-like GAF domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Molybdenum cofactor-binding domain Cytochrome c 11
Rudiment single hybrid motif post-HMGL domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Thiolase-like Nucleic acid-binding proteins 11
PurS-like PurM C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
FabD/lysophospholipase-like GroES-like 11
PPK N-terminal domain-like PHP14-like 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
Phage tail proteins Phage fibre proteins 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
2Fe-2S ferredoxin-like Bet v1-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Methylglyoxal synthase-like Methylglyoxal synthase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
PurS-like PurM N-terminal domain-like 11
PreATP-grasp domain post-HMGL domain-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
FabD/lysophospholipase-like ACP-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Carbamate kinase-like ACT-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Subtilisin-like Autotransporter 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Formin homology 2 domain (FH2 domain) Autotransporter 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
FMN-binding split barrel FMN-binding split barrel 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
MurE/MurF N-terminal domain MurE/MurF N-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
DNA clamp DNA clamp 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Thioredoxin-like Nqo1 middle domain-like 11
TGS-like Class II aaRS ABD-related 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
FAD-linked oxidoreductase ALDH-like 11
Thiolase-like FabD/lysophospholipase-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
FliG FliG 11
PIN domain-like Ribonuclease H-like 11
Globin-like Nucleotide cyclase 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
RuvA domain 2-like BRCT domain 11
PDZ domain-like ClpP/crotonase 11
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 11

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