SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Bradyrhizobium japonicum USDA 110

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

809 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 712
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 7033
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4816
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 454
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 433
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 355
CheY-like C-terminal effector domain of the bipartite response regulators 344
GroES-like NAD(P)-binding Rossmann-fold domains 333
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 3320
Homodimeric domain of signal transducing histidine kinase CheY-like 3219
Thioredoxin-like GST C-terminal domain-like 311
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3119
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2917
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 297
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 265
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 266
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 253
Homeodomain-like Homeodomain-like 258
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 244
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 244
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 244
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 2419
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 244
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 244
Nucleotide cyclase EAL domain-like 239
P-loop containing nucleoside triphosphate hydrolases MOP-like 232
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 238
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 215
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 192
cAMP-binding domain-like "Winged helix" DNA-binding domain 192
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 182
Homeodomain-like Ribonuclease H-like 182
PYP-like sensor domain (PAS domain) Nucleotide cyclase 188
Thiolase-like Thiolase-like 181
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 173
CheY-like PYP-like sensor domain (PAS domain) 1710
Cytochrome c Cytochrome c 176
"Winged helix" DNA-binding domain GAF domain-like 172
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 174
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 166
PYP-like sensor domain (PAS domain) EAL domain-like 156
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 154
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 152
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 134
P-loop containing nucleoside triphosphate hydrolases TPR-like 1311
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 137
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 122
Actin-like ATPase domain Actin-like ATPase domain 125
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 125
TPR-like TPR-like 129
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 116
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 117
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 115
C-terminal effector domain of the bipartite response regulators TPR-like 119
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 101
Enolase N-terminal domain-like Enolase C-terminal domain-like 102
HlyD-like secretion proteins HlyD-like secretion proteins 95
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 95
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 98
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 93
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 97
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 82
Trypsin-like serine proteases PDZ domain-like 85
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 84
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 84
lambda repressor-like DNA-binding domains RmlC-like cupins 81
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 86
Nucleotide cyclase TPR-like 86
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 83
PreATP-grasp domain Rudiment single hybrid motif 83
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 83
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 84
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 83
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 74
GroEL equatorial domain-like GroEL-intermediate domain like 71
GroEL-intermediate domain like GroEL apical domain-like 71
CheY-like Homeodomain-like 72
"Winged helix" DNA-binding domain PLP-dependent transferases 72
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 74
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 75
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 71
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 72
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
GroEL equatorial domain-like GroEL apical domain-like 71
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 72
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Glutathione synthetase ATP-binding domain-like NAD(P)-binding Rossmann-fold domains 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 64
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 62
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 64
ClpP/crotonase ClpP/crotonase 63
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 64
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 63
GAF domain-like Homodimeric domain of signal transducing histidine kinase 66
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 61
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 55
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 51
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 52
ParB/Sulfiredoxin KorB DNA-binding domain-like 51
(Trans)glycosidases Glycosyl hydrolase domain 54
Calcium ATPase, transduction domain A HAD-like 54
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
Regulatory protein AraC Homeodomain-like 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
HAMP domain-like Nucleotide cyclase 54
PurM N-terminal domain-like PurM C-terminal domain-like 52
beta-Roll beta-Roll 55
ISP domain Bet v1-like 53
HAD-like Calcium ATPase, transmembrane domain M 54
Lysozyme-like PGBD-like 41
CheY-like CheY-like 44
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 42
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 43
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 42
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 43
Glutathione synthetase ATP-binding domain-like Single hybrid motif 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 43
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 42
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 43
PDZ domain-like PDZ domain-like 43
ACT-like ACT-like 43
Single hybrid motif CoA-dependent acyltransferases 43
MoeA N-terminal region -like MoeA C-terminal domain-like 42
PreATP-grasp domain Single hybrid motif 42
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Rudiment single hybrid motif Single hybrid motif 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 42
Translation proteins EF-G C-terminal domain-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Cupredoxins Cupredoxins 44
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 44
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
RmlC-like cupins Homeodomain-like 43
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 43
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 42
Lysozyme-like beta-lactamase/transpeptidase-like 43
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
Phase 1 flagellin Phase 1 flagellin 41
CBS-domain pair FAD-binding/transporter-associated domain-like 31
"Winged helix" DNA-binding domain Chorismate lyase-like 31
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 33
E set domains (Trans)glycosidases 33
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 32
CheY-like Nucleotide cyclase 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
CheY-like Histidine-containing phosphotransfer domain, HPT domain 32
Homodimeric domain of signal transducing histidine kinase CheW-like 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
Nucleic acid-binding proteins RuvA domain 2-like 33
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Acetyl-CoA synthetase-like ACP-like 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Oxidoreductase molybdopterin-binding domain E set domains 31
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 31
GroES-like GroES-like 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
Class I glutamine amidotransferase-like Homeodomain-like 32
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 31
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Sensory domain-like Nucleotide cyclase 33
Nqo1 middle domain-like Nqo1C-terminal domain-like 33
ISP domain FAD/NAD(P)-binding domain 33
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 33
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 31
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 32
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 32
GAF domain-like CheY-like 33
Alpha-L RNA-binding motif Pseudouridine synthase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 33
TrkA C-terminal domain-like TrkA C-terminal domain-like 31
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 33
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 31
SpoIIaa-like cAMP-binding domain-like 32
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 33
PLP-binding barrel Alanine racemase C-terminal domain-like 31
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
PH0987 N-terminal domain-like Cyclophilin-like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Protein prenylyltransferase TPR-like 32
Histidine-containing phosphotransfer domain, HPT domain CheW-like 32
HAMP domain-like PYP-like sensor domain (PAS domain) 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
OMPA-like OMPT-like 32
PGBD-like L,D-transpeptidase catalytic domain-like 32
Pectin lyase-like Autotransporter 33
Triger factor/SurA peptide-binding domain-like FKBP-like 33
NAD(P)-binding Rossmann-fold domains ACT-like 33
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
Chaperone J-domain HSP40/DnaJ peptide-binding domain 32
GAF domain-like Nucleotide cyclase 33
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Adhesin YadA, collagen-binding domain Pili subunits 22
Caspase-like PGBD-like 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 21
Nucleotide-binding domain Nucleotide-binding domain 22
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Formyltransferase FMT C-terminal domain-like 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Thioredoxin-like Nqo1 FMN-binding domain-like 22
TPR-like Caspase-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Bacterial muramidases Lysozyme-like 21
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
beta-lactamase/transpeptidase-like SpoIIaa-like 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
beta-lactamase/transpeptidase-like cAMP-binding domain-like 21
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
HAMP domain-like GAF domain-like 22
CoA-dependent acyltransferases CoA-dependent acyltransferases 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Homeodomain-like SIS domain 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 21
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Sensory domain-like PYP-like sensor domain (PAS domain) 22
MalF N-terminal region-like MetI-like 21
CheW-like CheY-like 21
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 21
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Acylphosphatase/BLUF domain-like YrdC/RibB 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
SAM/Pointed domain P-loop containing nucleoside triphosphate hydrolases 22
GAF domain-like EAL domain-like 22
2Fe-2S ferredoxin-like ADC-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
SAM/Pointed domain Nucleotide cyclase 22
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
ACP-like ACP-like 22
GAF domain-like GAF domain-like 22
Nucleotide-diphospho-sugar transferases PilZ domain-like 22
HAMP domain-like CheY-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 22
SAM/Pointed domain TPR-like 22
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Sigma2 domain of RNA polymerase sigma factors NTF2-like 21
alpha/beta-Hydrolases Nucleotide cyclase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
P-loop containing nucleoside triphosphate hydrolases CarD-like 22
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Translation proteins Ribosomal protein S5 domain 2-like 21
E set domains Glycosyl hydrolase domain 22
Voltage-gated potassium channels cAMP-binding domain-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
FMN-binding split barrel UbiD C-terminal domain-like 22
Ribokinase-like Nucleotidylyl transferase 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
CarD-like TRCF domain-like 22
CheY-like HD-domain/PDEase-like 21
Thioredoxin-like Nqo1C-terminal domain-like 22
Nucleotidyltransferase ACT-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 21
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 22
PYP-like sensor domain (PAS domain) Homeodomain-like 22
CheY-like Methylesterase CheB, C-terminal domain 21
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 22
4Fe-4S ferredoxins ADC-like 21
Thioredoxin-like Nqo1 middle domain-like 22
Homeodomain-like Probable bacterial effector-binding domain 21
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
CheW-like CheW-like 21
CoA-dependent acyltransferases ACP-like 22
CheC-like Surface presentation of antigens (SPOA) 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
PDZ domain-like ClpP/crotonase 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
Aldolase AFP III-like domain 22
MetI-like MetI-like 21
"Winged helix" DNA-binding domain Actin-like ATPase domain 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 21
Sensory domain-like HAMP domain-like 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
PUA domain-like Ribosomal protein S5 domain 2-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
FliG FliG 21
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
Aldolase Xylose isomerase-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Nucleic acid-binding proteins GAD domain-like 11
WD40 repeat-like Cytochrome c 11
P-loop containing nucleoside triphosphate hydrolases CHY zinc finger-like 11
Macro domain-like Zn-dependent exopeptidases 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Pectin lyase-like beta-Roll 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Single hybrid motif TK C-terminal domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Homodimeric domain of signal transducing histidine kinase Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Translation proteins Translation proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Homeodomain-like Acetamidase/Formamidase-like 11
Phosphoenolpyruvate/pyruvate domain Homeodomain-like 11
alpha-helical ferredoxin ARM repeat 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like 11
Ferritin-like HAD-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
AGR C 984p-like AGR C 984p-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Nqo5-like HydB/Nqo4-like 11
Nucleic acid-binding proteins BRCT domain 11
Ribonuclease H-like HRDC-like 11
ACP-like Acyl-CoA N-acyltransferases (Nat) 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Prismane protein-like EAL domain-like 11
PPK N-terminal domain-like PHP14-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Multiheme cytochromes Cytochrome c 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Poly A polymerase C-terminal region-like ACT-like 11
LysM domain Duplicated hybrid motif 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Calcium-dependent phosphotriesterase NHL repeat 11
PLP-dependent transferases PLP-dependent transferases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Flavoproteins Riboflavin synthase domain-like 11
Aldolase SIS domain 11
Nucleic acid-binding proteins NAD(P)-binding Rossmann-fold domains 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Zn-finger domain of Sec23/24 Nucleotide cyclase 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
DNA methylase specificity domain DNA methylase specificity domain 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
YrdC/RibB HupF/HypC-like 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
HlyD-like secretion proteins Outer membrane efflux proteins (OEP) 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
ADC synthase Class I glutamine amidotransferase-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
UDP-Glycosyltransferase/glycogen phosphorylase Six-hairpin glycosidases 11
MetI-like Periplasmic binding protein-like II 11
PilZ domain-like lambda repressor-like DNA-binding domains 11
Ribbon-helix-helix CoaB-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Calcium-dependent phosphotriesterase Isochorismatase-like hydrolases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
MFS general substrate transporter MFS general substrate transporter 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Periplasmic binding protein-like II Cytochrome c 11
Sensory domain-like CheY-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Carbamate kinase-like PUA domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
cAMP-binding domain-like CBS-domain pair 11
Phage tail proteins Phage tail proteins 11
Methionine synthase domain Methionine synthase activation domain-like 11
Fe,Mn superoxide dismutase (SOD), C-terminal domain Rhodanese/Cell cycle control phosphatase 11
Acetyl-CoA synthetase-like Protein kinase-like (PK-like) 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Serine metabolism enzymes domain ACT-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
PRTase-like PRTase-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Rudiment single hybrid motif ClpP/crotonase 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Rhodanese/Cell cycle control phosphatase 11
FAD/NAD(P)-binding domain Thioredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
C-terminal effector domain of the bipartite response regulators HCP-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Nucleotide cyclase Protein prenylyltransferase 11
TGS-like Class II aaRS ABD-related 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Receptor-binding domain of short tail fibre protein gp12 Receptor-binding domain of short tail fibre protein gp12 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
CBS-domain pair Ribosomal protein S5 domain 2-like 11
GlcG-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
YebC-like PFL-like glycyl radical enzymes 11
Formyltransferase ClpP/crotonase 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases EreA/ChaN-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Transmembrane di-heme cytochromes CBD9-like 11
TGS-like ThrRS/AlaRS common domain 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Nucleotidylyl transferase Riboflavin kinase-like 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
FAD-linked reductases, C-terminal domain Thioredoxin-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
dUTPase-like dUTPase-like 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
GAF domain-like Homeodomain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
PUA domain-like alpha/beta knot 11
Carbamate kinase-like ACT-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
OMPA-like OMPA-like 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
Ribbon-helix-helix ACT-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Translation proteins ThrRS/AlaRS common domain 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
CO dehydrogenase molybdoprotein N-domain-like Bet v1-like 11
Clc chloride channel CBS-domain pair 11
Class II aaRS and biotin synthetases Translation proteins 11
beta-Barrel protease inhibitors beta-Barrel protease inhibitors 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
FMT C-terminal domain-like ClpP/crotonase 11
PGBD-like Trypsin-like serine proteases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleotide cyclase Nucleotide cyclase 11
HRDC-like HRDC-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
FAD-linked reductases, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
PIN domain-like Ribonuclease H-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Fucose-specific lectin Fucose-specific lectin 11
UDP-Glycosyltransferase/glycogen phosphorylase NAD(P)-binding Rossmann-fold domains 11
Hypothetical protein PA1324 Cadherin-like 11
2Fe-2S ferredoxin-like Bet v1-like 11
Hsp33 domain HSP33 redox switch-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
RNase III domain-like dsRNA-binding domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Trigger factor ribosome-binding domain FKBP-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
alpha/beta-Hydrolases LysM domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Single hybrid motif Single hybrid motif 11
PreATP-grasp domain PreATP-grasp domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
TGS-like Class II aaRS and biotin synthetases 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Metallo-hydrolase/oxidoreductase SCP-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
PilZ domain-like PilZ domain-like 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Ribosomal protein L6 Ribosomal protein L6 11
YjeF N-terminal domain-like Ribokinase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
SH3-domain Cysteine proteinases 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
LysM domain LysM domain 11
AFP III-like domain Xylose isomerase-like 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
beta-Roll Cadherin-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Cytochrome P450 Flavoproteins 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
ARM repeat ARM repeat 11
Molybdenum cofactor-binding domain Cytochrome c 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
L30e-like alpha/beta knot 11
TolA/TonB C-terminal domain TolA/TonB C-terminal domain 11
Phage tail proteins gp5 N-terminal domain-like 11
Thioredoxin-like TPR-like 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
TolB, N-terminal domain TPR-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PK beta-barrel domain-like Riboflavin synthase domain-like 11
NTF2-like FAD/NAD(P)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Acetyl-CoA synthetase-like Acyl-CoA N-acyltransferases (Nat) 11
TGS-like ACT-like 11
Phosphoenolpyruvate/pyruvate domain P-loop containing nucleoside triphosphate hydrolases 11
Cytochrome c Quinoprotein alcohol dehydrogenase-like 11
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
UROD/MetE-like UROD/MetE-like 11
FAD/NAD(P)-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
ClpP/crotonase NfeD domain-like 11
Alkaline phosphatase-like Concanavalin A-like lectins/glucanases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Zinc beta-ribbon DNA primase core 11
TPR-like alpha/beta-Hydrolases 11
ACP-like alpha/beta-Hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
YlxR-like L30e-like 11
ACT-like Formyltransferase 11
PYP-like sensor domain (PAS domain) GAF domain-like 11
YrdC/RibB RibA-like 11
UDP-Glycosyltransferase/glycogen phosphorylase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase tRNA-binding arm 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
4Fe-4S ferredoxins Adenine nucleotide alpha hydrolases-like 11
lambda repressor-like DNA-binding domains TorD-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked oxidoreductase ALDH-like 11
PIN domain-like DNA/RNA polymerases 11
PK beta-barrel domain-like PK C-terminal domain-like 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Ribbon-helix-helix Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 11
Periplasmic binding protein-like II NosL/MerB-like 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Transmembrane di-heme cytochromes Cytochrome c 11
Nucleotidyltransferase Nucleotidyltransferase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
RuvA domain 2-like RuvA domain 2-like 11
Hypothetical protein PA1324 beta-Roll 11
Cadherin-like Cadherin-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Apolipoprotein A-I Apolipoprotein A-I 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
DNA clamp DNA clamp 11
Periplasmic binding protein-like II Chitinase insertion domain 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
FAD/NAD(P)-binding domain alpha/beta-Hydrolases 11
Ferritin-like Ferritin-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Phage tail proteins Phage fibre proteins 11
Multiheme cytochromes TPR-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Translation proteins PRC-barrel domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 11
Trypsin-like serine proteases Ankyrin repeat 11
CBS-domain pair GHMP Kinase, C-terminal domain 11
Nucleotidyltransferase TGS-like 11
GAF domain-like Phosphohistidine domain 11
CalX-like CalX-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Molybdenum cofactor-binding domain Bet v1-like 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
DNA-glycosylase Nudix 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Single hybrid motif ClpP/crotonase 11
Nudix "Winged helix" DNA-binding domain 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Staphylococcal nuclease Ada DNA repair protein, N-terminal domain (N-Ada 10) 11
PP2C-like Protein kinase-like (PK-like) 11
Homodimeric domain of signal transducing histidine kinase C-terminal effector domain of the bipartite response regulators 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 11
HD-domain/PDEase-like ACT-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PHP domain-like AF1531-like 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PK beta-barrel domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
HD-domain/PDEase-like TGS-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Cytochrome P450 Riboflavin synthase domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
MgtE N-terminal domain-like CBS-domain pair 11
Ribonuclease H-like RuvA domain 2-like 11
Galactose mutarotase-like E set domains 11
Nucleotide-diphospho-sugar transferases HAD-like 11
Tex N-terminal region-like Ribonuclease H-like 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
RuvA domain 2-like BRCT domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
C-terminal effector domain of the bipartite response regulators TolB, N-terminal domain 11
gp5 N-terminal domain-like Phage fibre proteins 11
PreATP-grasp domain ClpP/crotonase 11
PheT/TilS domain Putative DNA-binding domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
alpha/beta-Hydrolases OsmC-like 11
PHP14-like Phospholipase D/nuclease 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
Acylphosphatase/BLUF domain-like HupF/HypC-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Periplasmic binding protein-like II ACT-like 11
CBS-domain pair MgtE membrane domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
HAMP domain-like EAL domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
HMA, heavy metal-associated domain HAD-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
cAMP-binding domain-like Nucleotide cyclase 11
S-adenosyl-L-methionine-dependent methyltransferases Sec-C motif 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Protein kinase-like (PK-like) Adenine nucleotide alpha hydrolases-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Nucleotide cyclase C-type lectin-like 11
Nucleotidyltransferase PHP domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Tex N-terminal region-like RuvA domain 2-like 11
UraD-Like Transthyretin (synonym: prealbumin) 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
Pectin lyase-like Pectin lyase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11

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