SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Ralstonia solanacearum CFBP2957

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

764 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 711
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3314
CheY-like C-terminal effector domain of the bipartite response regulators 292
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2712
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 192
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 195
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 186
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 185
GroES-like NAD(P)-binding Rossmann-fold domains 163
Thiolase-like Thiolase-like 166
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 154
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 154
Thioredoxin-like GST C-terminal domain-like 152
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 154
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 154
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 154
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 153
Actin-like ATPase domain Actin-like ATPase domain 135
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 135
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 133
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 121
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 122
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 118
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 117
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 109
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 105
Nucleotide cyclase EAL domain-like 107
Homeodomain-like Homeodomain-like 106
Phage tail proteins Phage tail proteins 94
PYP-like sensor domain (PAS domain) Nucleotide cyclase 98
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 97
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 95
Cytochrome c Cytochrome c 95
ACP-like ACP-like 99
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 96
Phage tail proteins gp5 N-terminal domain-like 94
P-loop containing nucleoside triphosphate hydrolases Translation proteins 85
"Winged helix" DNA-binding domain GAF domain-like 81
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 84
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 82
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 81
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 71
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 74
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Thiolase-like ACP-like 77
HAD-like Calcium ATPase, transmembrane domain M 65
PYP-like sensor domain (PAS domain) EAL domain-like 66
CheY-like Homeodomain-like 63
CheY-like P-loop containing nucleoside triphosphate hydrolases 63
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 62
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 62
Calcium ATPase, transduction domain A HAD-like 65
NAD(P)-binding Rossmann-fold domains ACP-like 66
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 65
Thiolase-like NAD(P)-binding Rossmann-fold domains 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 64
Phospholipase D/nuclease Phospholipase D/nuclease 65
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 66
P-loop containing nucleoside triphosphate hydrolases MOP-like 61
ACP-like S-adenosyl-L-methionine-dependent methyltransferases 55
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
"Winged helix" DNA-binding domain Chorismate lyase-like 52
Homeodomain-like SIS domain 51
"Winged helix" DNA-binding domain PLP-dependent transferases 51
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 53
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
CheY-like Homodimeric domain of signal transducing histidine kinase 55
PreATP-grasp domain Rudiment single hybrid motif 52
Alpha-L RNA-binding motif Pseudouridine synthase 53
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 54
FKBP-like Triger factor/SurA peptide-binding domain-like 54
NAD(P)-binding Rossmann-fold domains S-adenosyl-L-methionine-dependent methyltransferases 55
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 54
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 43
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
CBS-domain pair FAD-binding/transporter-associated domain-like 41
Aconitase iron-sulfur domain LeuD/IlvD-like 42
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 44
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
CoA-dependent acyltransferases CoA-dependent acyltransferases 44
ACP-like CoA-dependent acyltransferases 44
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 43
Translation proteins EF-G C-terminal domain-like 43
RNI-like RNI-like 44
HlyD-like secretion proteins HlyD-like secretion proteins 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
cAMP-binding domain-like "Winged helix" DNA-binding domain 42
lambda repressor-like DNA-binding domains RmlC-like cupins 41
TPR-like TPR-like 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 42
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
ACT-like ACT-like 44
PLP-binding barrel Alanine racemase C-terminal domain-like 42
E set domains (Trans)glycosidases 33
PYP-like sensor domain (PAS domain) CheY-like 33
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 32
Phage tail proteins Phage fibre proteins 32
Galactose mutarotase-like E set domains 32
Acetyl-CoA synthetase-like ACP-like 33
Cupredoxins Cupredoxins 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Nucleotidyltransferase ACT-like 32
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
RmlC-like cupins Homeodomain-like 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 32
HD-domain/PDEase-like ACT-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
ACP-like alpha/beta-Hydrolases 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 33
PYP-like sensor domain (PAS domain) GAF domain-like 33
ARM repeat ARM repeat 32
ISP domain Bet v1-like 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Trypsin-like serine proteases PDZ domain-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
PK beta-barrel domain-like PK C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 32
Cupredoxins Cytochrome c 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 33
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
gp5 N-terminal domain-like Phage fibre proteins 32
PDZ domain-like PDZ domain-like 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
HMA, heavy metal-associated domain HAD-like 33
Nucleotidyltransferase HD-domain/PDEase-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
(Trans)glycosidases Glycosyl hydrolase domain 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 32
Nucleic acid-binding proteins RuvA domain 2-like 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
HPr-like Phosphohistidine domain 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
MetI-like MetI-like 21
Nucleotidyltransferase TGS-like 21
Histidine-containing phosphotransfer domain, HPT domain CheY-like 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 21
PYP-like sensor domain (PAS domain) Homeodomain-like 22
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 22
L30e-like alpha/beta knot 21
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Acetyl-CoA synthetase-like S-adenosyl-L-methionine-dependent methyltransferases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 22
Translation proteins Ribosomal protein S5 domain 2-like 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Oxidoreductase molybdopterin-binding domain E set domains 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 22
GAF domain-like EAL domain-like 22
Translation proteins ThrRS/AlaRS common domain 22
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 22
Homeodomain-like Probable bacterial effector-binding domain 21
HD-domain/PDEase-like TGS-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
CoA-dependent acyltransferases alpha/beta-Hydrolases 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
HPr-like Phosphoenolpyruvate/pyruvate domain 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 22
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 21
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
2Fe-2S ferredoxin-like ADC-like 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
4Fe-4S ferredoxins ADC-like 21
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 22
Thiolase-like CoA-dependent acyltransferases 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
PH0987 N-terminal domain-like Cyclophilin-like 21
E set domains Glycosyl hydrolase domain 22
Single hybrid motif CoA-dependent acyltransferases 22
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 22
TGS-like ACT-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
RNI-like L domain-like 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 22
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 21
S-adenosyl-L-methionine-dependent methyltransferases CoA-dependent acyltransferases 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 22
Thiolase-like alpha/beta-Hydrolases 22
Restriction endonuclease-like Zinc beta-ribbon 21
Sensory domain-like Nucleotide cyclase 22
Regulatory protein AraC Homeodomain-like 21
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Formyltransferase FMT C-terminal domain-like 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
GAF domain-like Nucleotide cyclase 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 22
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
beta-Roll beta-Roll 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
CheW-like CheY-like 22
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PLP-dependent transferases PLP-dependent transferases 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
FMN-dependent nitroreductase-like NAD(P)-binding Rossmann-fold domains 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
FMN-dependent nitroreductase-like S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
CRISPR-associated protein CRISPR-associated protein 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
PreATP-grasp domain PreATP-grasp domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Class I glutamine amidotransferase-like Homeodomain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
ClpP/crotonase NfeD domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Globin-like Riboflavin synthase domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Tex N-terminal region-like RuvA domain 2-like 11
Trimeric LpxA-like enzymes "Winged helix" DNA-binding domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Acyl-CoA N-acyltransferases (Nat) Thiolase-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
FAD/NAD(P)-binding domain alpha/beta-Hydrolases 11
Voltage-gated potassium channels E set domains 11
PreATP-grasp domain Single hybrid motif 11
Carbamate kinase-like ACT-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
PRTase-like PRTase-like 11
PUA domain-like alpha/beta knot 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Bet v1-like Bet v1-like 11
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
alpha/beta-Hydrolases AhpD-like 11
Phoshotransferase/anion transport protein HPr-like 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
ACT-like Formyltransferase 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 11
PHP14-like Phospholipase D/nuclease 11
Nucleotidylyl transferase tRNA-binding arm 11
HAMP domain-like GAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
DNA primase core DNA primase DnaG, C-terminal domain 11
FabD/lysophospholipase-like ACP-like 11
FabD/lysophospholipase-like CoA-dependent acyltransferases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Barwin-like endoglucanases PHL pollen allergen 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Nucleotidylyl transferase Nudix 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
YajQ-like YajQ-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Nucleotide-diphospho-sugar transferases EspE N-terminal domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
GroES-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
JAB1/MPN domain Cysteine proteinases 11
Tex N-terminal region-like Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Rudiment single hybrid motif Single hybrid motif 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Duplicated hybrid motif Phosphohistidine domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Thiolase-like FabD/lysophospholipase-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
PDZ domain-like ClpP/crotonase 11
FMN-dependent nitroreductase-like Thiolase-like 11
Sialidases Sialidases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11
L domain-like L domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Cadherin-like Cadherin-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
PIN domain-like Ribonuclease H-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Chondroitin AC/alginate lyase Concanavalin A-like lectins/glucanases 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
Acetyl-CoA synthetase-like ADC synthase 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Putative DNA-binding domain Translation proteins 11
Nucleic acid-binding proteins GAD domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
FliG FliG 11
Aldolase post-HMGL domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
YrdC/RibB RibA-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
TATA-box binding protein-like DNA-glycosylase 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
TGS-like Class II aaRS ABD-related 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase CoA-dependent acyltransferases 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases alpha/beta-Hydrolases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Zinc beta-ribbon DNA primase core 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
ACP-like FMN-dependent nitroreductase-like 11
Cysteine proteinases P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
(Trans)glycosidases (Trans)glycosidases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
PRTase-like HAD-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
CheY-binding domain of CheA CheW-like 11
Lysozyme-like LysM domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
PrpR receptor domain-like Homeodomain-like 11
PurS-like Class I glutamine amidotransferase-like 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
PTS system IIB component-like PTS system IIB component-like 11
Copper amine oxidase, domain N Amine oxidase catalytic domain 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Subtilisin-like Cadherin-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
EPT/RTPC-like EPT/RTPC-like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Clc chloride channel CBS-domain pair 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
PPK N-terminal domain-like PHP14-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
TPR-like Carbohydrate-binding domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Trimeric LpxA-like enzymes P-loop containing nucleoside triphosphate hydrolases 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Hsp33 domain HSP33 redox switch-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
RuvA domain 2-like BRCT domain 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
RNase III domain-like dsRNA-binding domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Periplasmic binding protein-like II ACT-like 11
Nucleic acid-binding proteins BRCT domain 11
Homeodomain-like DNA-glycosylase 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Acetyl-CoA synthetase-like FMN-dependent nitroreductase-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
TGS-like ThrRS/AlaRS common domain 11
RuvA domain 2-like MCP/YpsA-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Acetyl-CoA synthetase-like Thiolase-like 11
ClpP/crotonase ClpP/crotonase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Nucleotide-diphospho-sugar transferases TPR-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Cysteine proteinases Restriction endonuclease-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Duplicated hybrid motif HPr-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Pseudouridine synthase PUA domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Cadherin-like Autotransporter 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
DNA clamp DNA clamp 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Copper amine oxidase, domain N Amine oxidase N-terminal region 11
Chelatase Precorrin-8X methylmutase CbiC/CobH 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Glycosyl hydrolases family 6, cellulases Carbohydrate-binding domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Translation proteins Translation proteins 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
MOP-like MOP-like 11
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Bacterial muramidases Lysozyme-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
GAF domain-like Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains CoA-dependent acyltransferases 11
Chorismate mutase II ACT-like 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains PLP-dependent transferases 11
alpha-helical ferredoxin Nucleotide-binding domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FAD-linked oxidoreductase ALDH-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein L6 Ribosomal protein L6 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
GroEL-intermediate domain like GroEL apical domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
Phase 1 flagellin Phase 1 flagellin 11
Ribbon-helix-helix ALDH-like 11
Carbamate kinase-like PUA domain-like 11
Protein prenylyltransferase TPR-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
DNA-glycosylase Nudix 11
E set domains E set domains 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
FabD/lysophospholipase-like alpha/beta-Hydrolases 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
PurS-like PurM C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
RmlC-like cupins RmlC-like cupins 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
F-box domain RNI-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
GroES-like GroES-like 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Periplasmic binding protein-like II MetI-like 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
Thioredoxin-like Thioredoxin-like 11
Lysozyme-like PGBD-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase alpha/beta-Hydrolases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CarD-like TRCF domain-like 11
PurS-like PurM N-terminal domain-like 11
Acyl-CoA N-acyltransferases (Nat) ACP-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
"Winged helix" DNA-binding domain MOP-like 11
Acyl-CoA N-acyltransferases (Nat) CoA-dependent acyltransferases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
DNA primase core P-loop containing nucleoside triphosphate hydrolases 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Thioredoxin-like TPR-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Fibronectin type III Pectin lyase-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
FKBP-like FKBP-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
CheC-like Surface presentation of antigens (SPOA) 11
Fibronectin type III Concanavalin A-like lectins/glucanases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
E set domains Autotransporter 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Macro domain-like Zn-dependent exopeptidases 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
RuvA domain 2-like RuvA domain 2-like 11
Sensory domain-like Sensory domain-like 11
E set domains Cadherin-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Tricorn protease N-terminal domain Galactose-binding domain-like 11
Translation proteins PRC-barrel domain 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Chondroitin AC/alginate lyase Fibronectin type III 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain FKBP-like 11
CheY-like EAL domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
Single hybrid motif Single hybrid motif 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like DNA/RNA polymerases 11
Class II aaRS and biotin synthetases GAD domain-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Homeodomain-like TATA-box binding protein-like 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
PurS-like FGAM synthase PurL, linker domain 11
TGS-like Class II aaRS and biotin synthetases 11
Pili subunits GspK insert domain-like 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
YgbK-like Isocitrate/Isopropylmalate dehydrogenase-like 11
UROD/MetE-like UROD/MetE-like 11
Ribonuclease H-like RuvA domain 2-like 11

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