SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in gamma proteobacterium HdN1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

713 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4120
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 365
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3115
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 2514
Nucleotide cyclase EAL domain-like 2316
Homodimeric domain of signal transducing histidine kinase CheY-like 2211
PYP-like sensor domain (PAS domain) Nucleotide cyclase 2016
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 173
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 177
Thiolase-like Thiolase-like 163
PYP-like sensor domain (PAS domain) EAL domain-like 1511
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1410
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 139
Actin-like ATPase domain Actin-like ATPase domain 135
CheY-like PYP-like sensor domain (PAS domain) 128
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 124
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 114
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 115
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 115
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 115
CheY-like C-terminal effector domain of the bipartite response regulators 111
Acetyl-CoA synthetase-like ACP-like 1111
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 115
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 115
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 101
CoA-dependent acyltransferases CoA-dependent acyltransferases 1010
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1010
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 106
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 95
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 99
Cytochrome c Cytochrome c 83
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 86
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 84
CheY-like Nucleotide cyclase 86
CoA-dependent acyltransferases ACP-like 88
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 73
P-loop containing nucleoside triphosphate hydrolases Translation proteins 75
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 74
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 73
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 73
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 75
ACP-like ACP-like 77
CheY-like EAL domain-like 75
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 64
PreATP-grasp domain Rudiment single hybrid motif 63
GroES-like NAD(P)-binding Rossmann-fold domains 63
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 62
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 66
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 63
CheY-like P-loop containing nucleoside triphosphate hydrolases 62
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 51
Thioredoxin-like GST C-terminal domain-like 52
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
TPR-like TPR-like 55
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 53
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 55
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
ACT-like ACT-like 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 54
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
CheY-like Homeodomain-like 51
PLP-binding barrel Alanine racemase C-terminal domain-like 52
CheY-like CheY-like 54
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 53
ACP-like alpha/beta-Hydrolases 55
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
CoA-dependent acyltransferases alpha/beta-Hydrolases 55
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Rudiment single hybrid motif Single hybrid motif 42
ClpP/crotonase ClpP/crotonase 42
PreATP-grasp domain Single hybrid motif 42
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 44
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 42
Calcium ATPase, transduction domain A HAD-like 44
Translation proteins EF-G C-terminal domain-like 43
Glutathione synthetase ATP-binding domain-like Single hybrid motif 42
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 43
Histidine-containing phosphotransfer domain, HPT domain CheW-like 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 43
PurM N-terminal domain-like PurM C-terminal domain-like 42
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 43
HAMP domain-like Nucleotide cyclase 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 42
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Alpha-L RNA-binding motif Pseudouridine synthase 31
NAD(P)-binding Rossmann-fold domains ACP-like 33
Immunoglobulin Fibronectin type III 33
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
ACP-like FabD/lysophospholipase-like 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
alpha/beta-Hydrolases NAD(P)-binding Rossmann-fold domains 33
DNA methylase specificity domain DNA methylase specificity domain 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
HMA, heavy metal-associated domain HAD-like 33
ACP-like Thiolase-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Single hybrid motif CoA-dependent acyltransferases 32
GAF domain-like Nucleotide cyclase 33
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 33
HD-domain/PDEase-like Nucleotidyltransferase 32
Homeodomain-like Homeodomain-like 33
Thiolase-like FabD/lysophospholipase-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
Homodimeric domain of signal transducing histidine kinase CheW-like 31
PYP-like sensor domain (PAS domain) GAF domain-like 33
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 32
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
GAF domain-like EAL domain-like 33
Nucleic acid-binding proteins RuvA domain 2-like 33
HAD-like Calcium ATPase, transmembrane domain M 33
Thioredoxin-like Thioredoxin-like 33
CheY-like Histidine-containing phosphotransfer domain, HPT domain 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Nucleotidyltransferase ACT-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
HD-domain/PDEase-like ACT-like 32
MOP-like MOP-like 22
TGS-like ACT-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Nucleotide-binding domain Nucleotide-binding domain 22
Trypsin-like serine proteases PDZ domain-like 22
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
HAMP domain-like EAL domain-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
HD-domain/PDEase-like TGS-like 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
L30e-like alpha/beta knot 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
PilZ domain-like Nucleotide cyclase 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 22
Nqo5-like HydB/Nqo4-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Galactose mutarotase-like E set domains 21
MFS general substrate transporter MFS general substrate transporter 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Resolvase-like Homeodomain-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 21
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 21
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
PDZ domain-like ClpP/crotonase 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Aldolase post-HMGL domain-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
PDZ domain-like PDZ domain-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Thiolase-like NAD(P)-binding Rossmann-fold domains 22
Flavoproteins Riboflavin synthase domain-like 21
SMAD/FHA domain SMAD/FHA domain 22
HD-domain/PDEase-like "Winged helix" DNA-binding domain 21
Pentapeptide repeat-like Pentapeptide repeat-like 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 21
alpha/beta-Hydrolases Galactose-binding domain-like 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Immunoglobulin Immunoglobulin 22
HD-domain/PDEase-like GAF domain-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 21
CheY-like Methylesterase CheB, C-terminal domain 21
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 21
ACP-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Nucleotidyltransferase TGS-like 21
CheW-like CheY-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 21
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 22
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 21
Cadherin-like Ricin B-like lectins 11
Nitrite and sulphite reductase 4Fe-4S domain-like Precorrin-8X methylmutase CbiC/CobH 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
PurS-like PurM N-terminal domain-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Protein kinase-like (PK-like) TPR-like 11
Acetyl-CoA synthetase-like Thiolase-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
CheC-like Surface presentation of antigens (SPOA) 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Zinc beta-ribbon DNA primase core 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Phage tail proteins gp5 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Nudix "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
4Fe-4S ferredoxins ADC-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
beta-Roll beta-Roll 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 11
Lysozyme-like LysM domain 11
PurS-like Class I glutamine amidotransferase-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
PHP14-like Phospholipase D/nuclease 11
GIY-YIG endonuclease RuvA domain 2-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
TPR-like Ankyrin repeat 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
PPK N-terminal domain-like PHP14-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
vWA-like Formin homology 2 domain (FH2 domain) 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
alpha/beta-Hydrolases PilZ domain-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Chorismate mutase II Periplasmic binding protein-like II 11
ACP-like PLP-dependent transferases 11
RNase III domain-like dsRNA-binding domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Cupredoxins Cupredoxins 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Translation proteins PRC-barrel domain 11
vWA-like TPR-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Translation proteins ThrRS/AlaRS common domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PilZ domain-like EAL domain-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
TGS-like Class II aaRS ABD-related 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
GroES-like GroES-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
Carboxypeptidase regulatory domain-like Calcium-dependent phosphotriesterase 11
FabD/lysophospholipase-like GroES-like 11
CRISPR-associated protein CRISPR-associated protein 11
Cupredoxins Cytochrome c 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
GroEL-intermediate domain like GroEL apical domain-like 11
Periplasmic binding protein-like II Lysozyme-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Pili subunits GspK insert domain-like 11
YbaK/ProRS associated domain HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases HAD-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nucleotidylyl transferase tRNA-binding arm 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
cAMP-binding domain-like FabD/lysophospholipase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
GAF domain-like CheY-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Periplasmic binding protein-like II ACT-like 11
HRDC-like HRDC-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
CheY-like HD-domain/PDEase-like 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Bacterial muramidases Lysozyme-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
"Winged helix" DNA-binding domain GAF domain-like 11
Acetyl-CoA synthetase-like FabD/lysophospholipase-like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like JAB1/MPN domain 11
Carbamate kinase-like PUA domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Phage tail proteins Phage tail proteins 11
Acetyl-CoA synthetase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Galactose mutarotase-like Galactose mutarotase-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
CheY-like TPR-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Pseudouridine synthase PUA domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
PP2C-like Protein kinase-like (PK-like) 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
HCP-like HCP-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
TSP type-3 repeat beta-Roll 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
HAMP domain-like CheY-like 11
ACT-like Formyltransferase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
OMPA-like OmpA-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
DNA-glycosylase Nudix 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
UROD/MetE-like UROD/MetE-like 11
FAD-linked oxidoreductase ALDH-like 11
MgtE N-terminal domain-like CBS-domain pair 11
3-carboxy-cis,cis-mucoante lactonizing enzyme 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
GAF domain-like GAF domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Bacterial muramidases Bacterial muramidases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
ISP domain Bet v1-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
His-Me finger endonucleases Ada DNA repair protein, N-terminal domain (N-Ada 10) 11
Ribonuclease H-like DNA/RNA polymerases 11
TGS-like ThrRS/AlaRS common domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
PP2C-like FKBP-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
RuvA domain 2-like RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains SCP-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
FKBP-like FKBP-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Single hybrid motif Single hybrid motif 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Class I glutamine amidotransferase-like Homeodomain-like 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
PheT/TilS domain Putative DNA-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
SCP-like SCP-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Ribonuclease H-like HRDC-like 11
PurS-like FGAM synthase PurL, linker domain 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nudix Nudix 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Tex N-terminal region-like RuvA domain 2-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Sensory domain-like CheY-like 11
CarD-like TRCF domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Thioesterase/thiol ester dehydrase-isomerase SCP-like 11
PHP domain-like P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
ACP-like GroES-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
P-loop containing nucleoside triphosphate hydrolases PRTase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Nitrite/Sulfite reductase N-terminal domain-like Precorrin-8X methylmutase CbiC/CobH 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
PUA domain-like Nucleotidylyl transferase 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
FliG FliG 11
EAL domain-like HD-domain/PDEase-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
PLC-like phosphodiesterases C-type lectin-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
CheY-like PP2C-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
2Fe-2S ferredoxin-like ADC-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Putative DNA-binding domain Translation proteins 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Translation proteins Translation proteins 11
Carbamate kinase-like ACT-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Nucleic acid-binding proteins GAD domain-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain PreATP-grasp domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
CBS-domain pair MgtE membrane domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Hsp33 domain HSP33 redox switch-like 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
Lysozyme-like PGBD-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Galactose mutarotase-like Six-hairpin glycosidases 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
TGS-like Class II aaRS and biotin synthetases 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Chorismate mutase II ACT-like 11
Phase 1 flagellin Phase 1 flagellin 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Thioesterase/thiol ester dehydrase-isomerase 11
MetI-like MetI-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Thioesterase/thiol ester dehydrase-isomerase Nucleic acid-binding proteins 11
Sensory domain-like HAMP domain-like 11
PRTase-like PRTase-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
HAD-like HAD-like 11
NAD-binding domain of HMG-CoA reductase Protein kinase-like (PK-like) 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
TSP type-3 repeat TSP type-3 repeat 11
Trigger factor ribosome-binding domain FKBP-like 11
DNA clamp DNA clamp 11
PIN domain-like DNA/RNA polymerases 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Nudix Thiamin phosphate synthase 11
PUA domain-like alpha/beta knot 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
GAF domain-like Phosphohistidine domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Cytochrome P450 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ACT-like HAD-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
PP2C-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
"Winged helix" DNA-binding domain MOP-like 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
MurE/MurF N-terminal domain MurE/MurF N-terminal domain 11
Substrate-binding domain of HMG-CoA reductase Protein kinase-like (PK-like) 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nucleotidylyl transferase Nudix 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
HAMP domain-like GAF domain-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
RmlC-like cupins Homeodomain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Thiolase-like GroES-like 11
PIN domain-like Ribonuclease H-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Thioredoxin-like TPR-like 11
Nucleic acid-binding proteins BRCT domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases TPR-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Ribonuclease H-like BRCT domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Barwin-like endoglucanases Sporulation related repeat 11
YrdC/RibB RibA-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
PurS-like PurM C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
GAF domain-like Homeodomain-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Class II aaRS and biotin synthetases Translation proteins 11
Tropomyosin Smc hinge domain 11
Activating enzymes of the ubiquitin-like proteins JAB1/MPN domain 11
PLP-dependent transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11

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