SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Herbaspirillum seropedicae SmR1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

732 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1071
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5322
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3711
CheY-like C-terminal effector domain of the bipartite response regulators 303
Homeodomain-like Homeodomain-like 237
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 214
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 211
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 194
Actin-like ATPase domain Actin-like ATPase domain 176
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 173
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1613
P-loop containing nucleoside triphosphate hydrolases MOP-like 162
Nucleotide cyclase EAL domain-like 1510
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 153
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1411
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1412
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 145
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 142
"Winged helix" DNA-binding domain GAF domain-like 131
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 134
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 131
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 135
GroES-like NAD(P)-binding Rossmann-fold domains 132
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 124
Cytochrome c Cytochrome c 128
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 127
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 125
Thioredoxin-like GST C-terminal domain-like 121
CheY-like Homodimeric domain of signal transducing histidine kinase 1210
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1210
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 114
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 112
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 114
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 105
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 102
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 106
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1010
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
"Winged helix" DNA-binding domain PLP-dependent transferases 91
Thiolase-like Thiolase-like 91
Phage tail proteins Phage tail proteins 93
Phage tail proteins gp5 N-terminal domain-like 93
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 94
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 97
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 91
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 84
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 81
CheY-like Homeodomain-like 83
PYP-like sensor domain (PAS domain) EAL domain-like 86
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 77
GAF domain-like Nucleotide cyclase 75
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
PreATP-grasp domain Rudiment single hybrid motif 73
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 74
Enolase N-terminal domain-like Enolase C-terminal domain-like 71
Calcium ATPase, transduction domain A HAD-like 74
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 75
Calcium ATPase, transmembrane domain M HAD-like 74
RmlC-like cupins Homeodomain-like 72
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 74
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 62
Homeodomain-like SIS domain 61
Phospholipase D/nuclease Phospholipase D/nuclease 65
PYP-like sensor domain (PAS domain) GAF domain-like 66
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 63
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 62
ISP domain Bet v1-like 62
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 62
(Trans)glycosidases Glycosyl hydrolase domain 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 64
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 64
Histidine-containing phosphotransfer domain, HPT domain CheW-like 64
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 62
HAMP domain-like Nucleotide cyclase 63
CheY-like PYP-like sensor domain (PAS domain) 66
cAMP-binding domain-like "Winged helix" DNA-binding domain 52
Alpha-L RNA-binding motif Pseudouridine synthase 52
TPR-like TPR-like 55
CheY-like P-loop containing nucleoside triphosphate hydrolases 51
Translation proteins EF-G C-terminal domain-like 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
HlyD-like secretion proteins HlyD-like secretion proteins 54
Phage tail proteins Phage fibre proteins 51
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
gp5 N-terminal domain-like Phage fibre proteins 51
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
GAF domain-like Homodimeric domain of signal transducing histidine kinase 55
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
Class I glutamine amidotransferase-like Homeodomain-like 51
GAF domain-like EAL domain-like 44
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 41
CheY-like Methylesterase CheB, C-terminal domain 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Triger factor/SurA peptide-binding domain-like FKBP-like 44
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
CBS-domain pair FAD-binding/transporter-associated domain-like 41
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 42
MetI-like MetI-like 42
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 43
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
E set domains (Trans)glycosidases 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 43
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
beta-Roll beta-Roll 44
Homodimeric domain of signal transducing histidine kinase CheW-like 42
CheY-like Histidine-containing phosphotransfer domain, HPT domain 44
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Nucleotidyltransferase ACT-like 32
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
Galactose mutarotase-like E set domains 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 33
Nucleotidyltransferase HD-domain/PDEase-like 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
GAF domain-like Homeodomain-like 32
HD-domain/PDEase-like ACT-like 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
Trypsin-like serine proteases PDZ domain-like 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
GroES-like GroES-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
PDZ domain-like PDZ domain-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Regulatory protein AraC Homeodomain-like 31
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
E set domains Glycosyl hydrolase domain 33
PH0987 N-terminal domain-like Cyclophilin-like 32
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
P-loop containing nucleoside triphosphate hydrolases ACT-like 31
CheY-like CheY-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
CheW-like CheY-like 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
HMA, heavy metal-associated domain HAD-like 32
HCP-like HCP-like 32
Nucleic acid-binding proteins RuvA domain 2-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
ACT-like ACT-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleotidyltransferase TGS-like 21
HD-domain/PDEase-like HD-domain/PDEase-like 21
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
GAF domain-like HD-domain/PDEase-like 21
Translation proteins ThrRS/AlaRS common domain 22
CheY-like HD-domain/PDEase-like 22
HD-domain/PDEase-like TGS-like 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
TGS-like ACT-like 21
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
"Winged helix" DNA-binding domain Chorismate lyase-like 22
Cupredoxins Cytochrome c 22
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
GroEL equatorial domain-like GroEL apical domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Rudiment single hybrid motif Single hybrid motif 22
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Acetyl-CoA synthetase-like ACP-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
Single hybrid motif CoA-dependent acyltransferases 22
GroEL equatorial domain-like GroEL-intermediate domain like 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
L30e-like alpha/beta knot 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
tRNA-binding arm Class II aaRS and biotin synthetases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Ribonuclease H-like DNA/RNA polymerases 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 22
Formyltransferase FMT C-terminal domain-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 21
4Fe-4S ferredoxins ADC-like 21
GroEL-intermediate domain like GroEL apical domain-like 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
LysM domain Duplicated hybrid motif 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
PreATP-grasp domain Single hybrid motif 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
GAF domain-like CheY-like 22
Aldolase post-HMGL domain-like 21
Putative DNA-binding domain GAF domain-like 21
CheY-like Nucleotide cyclase 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Clc chloride channel CBS-domain pair 21
HAMP domain-like EAL domain-like 22
2Fe-2S ferredoxin-like ADC-like 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
Aconitase iron-sulfur domain LeuD/IlvD-like 21
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
EAL domain-like CBS-domain pair 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Ribosomal protein L6 Ribosomal protein L6 11
Nucleotidylyl transferase Riboflavin kinase-like 11
PurS-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PHP14-like Phospholipase D/nuclease 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
Translation proteins PRC-barrel domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
Copper amine oxidase, domain N Amine oxidase catalytic domain 11
Methylglyoxal synthase-like Methylglyoxal synthase-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
EAL domain-like HD-domain/PDEase-like 11
ACP-like alpha/beta-Hydrolases 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Copper amine oxidase, domain N Amine oxidase N-terminal region 11
PreATP-grasp domain PreATP-grasp domain 11
PurS-like Class I glutamine amidotransferase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
PIN domain-like DNA/RNA polymerases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
(Trans)glycosidases (Trans)glycosidases 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
HD-domain/PDEase-like C-terminal effector domain of the bipartite response regulators 11
DNA primase core DNA primase DnaG, C-terminal domain 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
Trypsin-like serine proteases His-Me finger endonucleases 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
PUA domain-like alpha/beta knot 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Molybdenum cofactor-binding domain Cytochrome c 11
Pseudouridine synthase Pseudouridine synthase 11
MalF N-terminal region-like MetI-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Chelatase Precorrin-8X methylmutase CbiC/CobH 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Sensory domain-like Nucleotide cyclase 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Clavaminate synthase-like alpha/beta-Hydrolases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
PheT/TilS domain Putative DNA-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Periplasmic binding protein-like II ACT-like 11
Single hybrid motif Single hybrid motif 11
Phase 1 flagellin Phase 1 flagellin 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
GAF domain-like GAF domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
"Winged helix" DNA-binding domain MOP-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
TGS-like Class II aaRS and biotin synthetases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Carbamate kinase-like PUA domain-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Globin-like Riboflavin synthase domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PDZ domain-like ClpP/crotonase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 11
Ribonuclease H-like RuvA domain 2-like 11
Acetyl-CoA synthetase-like Clavaminate synthase-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
RuvA domain 2-like BRCT domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Subtilisin-like Pectin lyase-like 11
Rudiment single hybrid motif Cyclophilin-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
PH0987 N-terminal domain-like Single hybrid motif 11
Subtilisin-like Autotransporter 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Nucleic acid-binding proteins PheT/TilS domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PurS-like PurM N-terminal domain-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
CheY-like EAL domain-like 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
ClpP/crotonase ClpP/crotonase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Sec63 N-terminal domain-like PHP domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
E set domains Autotransporter 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
PIN domain-like Ribonuclease H-like 11
beta-sandwich domain of Sec23/24 P-loop containing nucleoside triphosphate hydrolases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
YrdC/RibB RibA-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
RmlC-like cupins RmlC-like cupins 11
Zinc beta-ribbon DNA primase core 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
CarD-like TRCF domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Pectin lyase-like Autotransporter 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Tex N-terminal region-like Ribonuclease H-like 11
FliG FliG 11
Carbamate kinase-like ACT-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
ACP-like CoA-dependent acyltransferases 11
Lysozyme-like LysM domain 11
DNA polymerase beta, N-terminal domain-like Sec63 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Trigger factor ribosome-binding domain FKBP-like 11
TPR-like NTF2-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PilZ domain-like PilZ domain-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Nucleotidylyl transferase tRNA-binding arm 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
PrpR receptor domain-like Homeodomain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Cupredoxins Cupredoxins 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Putative DNA-binding domain Translation proteins 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Cupredoxins Carboxypeptidase regulatory domain-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Nitrous oxide reductase, N-terminal domain Nitrous oxide reductase, N-terminal domain 11
PurS-like FGAM synthase PurL, linker domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
DNA-glycosylase Nudix 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Class II aaRS and biotin synthetases Translation proteins 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
DNA clamp DNA clamp 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
CBS-domain pair Nucleotide cyclase 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
E set domains E set domains 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Cyclophilin-like Cyclophilin-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
DNA methylase specificity domain DNA methylase specificity domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
ACT-like Formyltransferase 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
HAMP domain-like GAF domain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
HCP-like TPR-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PreATP-grasp domain Cyclophilin-like 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
ISP domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
CheW-like CheW-like 11
RNase III domain-like dsRNA-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Nucleotidyltransferase Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
CheY-like TPR-like 11
YjeF N-terminal domain-like Ribokinase-like 11
PHP domain-like Nucleic acid-binding proteins 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
ACP-like ACP-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
YgfB-like Sec-C motif 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
FKBP-like FKBP-like 11
PRTase-like PRTase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Nudix "Winged helix" DNA-binding domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Cyclophilin-like Single hybrid motif 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Acetyl-CoA synthetase-like Glycerol-3-phosphate (1)-acyltransferase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Pseudouridine synthase PUA domain-like 11
PHP domain-like AF1531-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
YajQ-like YajQ-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Galactose mutarotase-like (Trans)glycosidases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Homeodomain-like Ribonuclease H-like 11
TGS-like ThrRS/AlaRS common domain 11
ALDH-like ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Bacterial muramidases Lysozyme-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Thioredoxin-like Nqo1 middle domain-like 11
TGS-like Class II aaRS ABD-related 11
Sec63 N-terminal domain-like Nucleotidyltransferase 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Flavoproteins Riboflavin synthase domain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Thioredoxin-like Nqo1C-terminal domain-like 11
CoA-dependent acyltransferases Clavaminate synthase-like 11
RuvA domain 2-like MCP/YpsA-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
CheC-like Surface presentation of antigens (SPOA) 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Translation proteins Translation proteins 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
PPK N-terminal domain-like PHP14-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nucleotidylyl transferase Nudix 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like I Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
RuvA domain 2-like JAB1/MPN domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Barwin-like endoglucanases Sporulation related repeat 11
Chorismate mutase II ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
CBS-domain pair PP2C-like 11
Thioredoxin-like Thioredoxin-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
FAD-linked oxidoreductase ALDH-like 11
Nucleic acid-binding proteins BRCT domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Actin-like ATPase domain HD-domain/PDEase-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Tropomyosin Duplicated hybrid motif 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
ISP domain Riboflavin synthase domain-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Homeodomain-like 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
UraD-Like Zn-dependent exopeptidases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
RuvA domain 2-like RuvA domain 2-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Nucleotidyltransferase PHP domain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
ACP-like Clavaminate synthase-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
AF1531-like Nucleic acid-binding proteins 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
GIY-YIG endonuclease RuvA domain 2-like 11
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Class I glutamine amidotransferase-like Glycosyl hydrolase domain 11
MOP-like MOP-like 11
CheY-binding domain of CheA CheW-like 11

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