SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in syncytium symbiont of Diaphorina citri

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

230 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
P-loop containing nucleoside triphosphate hydrolases Translation proteins 64
Thiolase-like Thiolase-like 54
Actin-like ATPase domain Actin-like ATPase domain 43
Alpha-L RNA-binding motif Pseudouridine synthase 31
Thiolase-like NAD(P)-binding Rossmann-fold domains 33
ACP-like NAD(P)-binding Rossmann-fold domains 33
ACP-like ACP-like 33
ACP-like Thiolase-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 32
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Translation proteins EF-G C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
ACP-like S-adenosyl-L-methionine-dependent methyltransferases 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 22
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Single hybrid motif CoA-dependent acyltransferases 21
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
NAD(P)-binding Rossmann-fold domains S-adenosyl-L-methionine-dependent methyltransferases 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
PHP domain-like AF1531-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
Nucleic acid-binding proteins BRCT domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Acyl-CoA N-acyltransferases (Nat) Thiolase-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
GroEL-intermediate domain like GroEL apical domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
ACP-like ClpP/crotonase 11
Acyl-CoA N-acyltransferases (Nat) ClpP/crotonase 11
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 11
Acyl-CoA N-acyltransferases (Nat) ACP-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Acyl-CoA N-acyltransferases (Nat) NAD(P)-binding Rossmann-fold domains 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Translation proteins PRC-barrel domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
DNA-glycosylase Nudix 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Class II aaRS and biotin synthetases Translation proteins 11
Acetyl-CoA synthetase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
TGS-like Class II aaRS ABD-related 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PreATP-grasp domain Rudiment single hybrid motif 11
L30e-like alpha/beta knot 11
S-adenosyl-L-methionine-dependent methyltransferases ClpP/crotonase 11
Translation proteins Translation proteins 11
Translation proteins Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
TGS-like ThrRS/AlaRS common domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
CoA-dependent acyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Ribosomal protein L6 Ribosomal protein L6 11
YrdC/RibB RibA-like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
PUA domain-like alpha/beta knot 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Nucleic acid-binding proteins PheT/TilS domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nucleic acid-binding proteins RuvA domain 2-like 11
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 11
Formyltransferase FMT C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Translation proteins ThrRS/AlaRS common domain 11
Pseudouridine synthase PUA domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Thiolase-like Acetyl-CoA synthetase-like 11
HD-domain/PDEase-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PheT/TilS domain Putative DNA-binding domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
TGS-like Class II aaRS and biotin synthetases 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins GAD domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidylyl transferase tRNA-binding arm 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
ACP-like CoA-dependent acyltransferases 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
DNA clamp DNA clamp 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
RuvA domain 2-like BRCT domain 11
Zinc beta-ribbon DNA primase core 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
ACP-like Acetyl-CoA synthetase-like 11
Acyl-CoA N-acyltransferases (Nat) S-adenosyl-L-methionine-dependent methyltransferases 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Thiolase-like CoA-dependent acyltransferases 11
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Macro domain-like Zn-dependent exopeptidases 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Thioredoxin-like GST C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Thiolase-like ClpP/crotonase 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
GroEL equatorial domain-like GroEL apical domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11

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