SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Micavibrio aeruginosavorus ARL-13

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

468 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2112
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1816
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1010
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1010
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 98
Homodimeric domain of signal transducing histidine kinase CheY-like 87
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 82
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 73
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
CheY-like Histidine-containing phosphotransfer domain, HPT domain 76
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 64
CheY-like C-terminal effector domain of the bipartite response regulators 61
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 66
P-loop containing nucleoside triphosphate hydrolases Translation proteins 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
beta-Roll beta-Roll 55
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
Actin-like ATPase domain Actin-like ATPase domain 52
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 53
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
PDZ domain-like ClpP/crotonase 51
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
CBS-domain pair FAD-binding/transporter-associated domain-like 41
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 43
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 43
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
Thiolase-like Thiolase-like 41
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
PYP-like sensor domain (PAS domain) CheY-like 44
Triger factor/SurA peptide-binding domain-like FKBP-like 43
CheY-like CheY-like 44
CheY-like P-loop containing nucleoside triphosphate hydrolases 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 42
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 43
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 44
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 43
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 43
Translation proteins EF-G C-terminal domain-like 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Thioredoxin-like GST C-terminal domain-like 31
GroES-like NAD(P)-binding Rossmann-fold domains 31
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 32
HAD-like Calcium ATPase, transmembrane domain M 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
Calcium ATPase, transduction domain A HAD-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 31
CheY-like Homeodomain-like 32
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 32
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
Lysozyme-like beta-lactamase/transpeptidase-like 33
Alpha-L RNA-binding motif Pseudouridine synthase 31
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 31
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Homodimeric domain of signal transducing histidine kinase CheW-like 22
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 21
CheW-like CheW-like 22
Formyltransferase FMT C-terminal domain-like 21
ClpP/crotonase ClpP/crotonase 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Bacterial muramidases Lysozyme-like 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
cAMP-binding domain-like EAL domain-like 21
Single hybrid motif CoA-dependent acyltransferases 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
CheY-like Methylesterase CheB, C-terminal domain 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Nucleotide cyclase EAL domain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
PreATP-grasp domain Rudiment single hybrid motif 22
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 22
Nucleic acid-binding proteins RuvA domain 2-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
Macro domain-like Zn-dependent exopeptidases 21
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Pectin lyase-like Pectin lyase-like 22
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Pentapeptide repeat-like Pentapeptide repeat-like 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
HAMP domain-like PYP-like sensor domain (PAS domain) 22
HCP-like HCP-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Sialidases Sialidases 21
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
CheY-like Nucleotide cyclase 22
PDZ domain-like PDZ domain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
Subtilisin-like Galactose-binding domain-like 21
Trypsin-like serine proteases PDZ domain-like 22
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
FliG FliG 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Thioredoxin-like YWTD domain 11
Class II aaRS and biotin synthetases Translation proteins 11
PreATP-grasp domain Single hybrid motif 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Hsp33 domain HSP33 redox switch-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Nucleic acid-binding proteins PheT/TilS domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
beta-Roll Cadherin-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
TGS-like ACT-like 11
TPR-like HCP-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
HD-domain/PDEase-like TGS-like 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
DNA methylase specificity domain DNA methylase specificity domain 11
Single hybrid motif Outer membrane efflux proteins (OEP) 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
PIN domain-like DNA/RNA polymerases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Periplasmic binding protein-like II ACT-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like alpha/beta knot 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
DNA-glycosylase Nudix 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
TGS-like Class II aaRS ABD-related 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Carbamate kinase-like ACT-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
RuvA domain 2-like BRCT domain 11
Translation proteins PRC-barrel domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
(Trans)glycosidases Glycosyl hydrolase domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Thioredoxin-like TPR-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Class II aaRS and biotin synthetases GAD domain-like 11
PIN domain-like Ribonuclease H-like 11
ACT-like ACT-like 11
CarD-like TRCF domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
ALDH-like ALDH-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Transmembrane di-heme cytochromes YceI-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
vWA-like beta-Roll 11
Barwin-like endoglucanases Sporulation related repeat 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Smc hinge domain Tropomyosin 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
beta-Roll Concanavalin A-like lectins/glucanases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
CheC-like Surface presentation of antigens (SPOA) 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif TK C-terminal domain-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Prim-pol domain P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
SIS domain CBS-domain pair 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
PheT/TilS domain Putative DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Nucleotidyltransferase ACT-like 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PreATP-grasp domain PreATP-grasp domain 11
TGS-like ThrRS/AlaRS common domain 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
HD-domain/PDEase-like ACT-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
RuvA domain 2-like JAB1/MPN domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
alpha/beta-Hydrolases beta-Roll 11
beta-Roll C-type lectin-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
HIT-like HIT-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
FAD-linked oxidoreductase ALDH-like 11
Single hybrid motif HlyD-like secretion proteins 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Nucleotide cyclase Nucleotide cyclase 11
GroEL equatorial domain-like GroEL apical domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Ankyrin repeat Subtilisin-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
TGS-like Class II aaRS and biotin synthetases 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
TPR-like TPR-like 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Periplasmic binding protein-like II Lysozyme-like 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
DNA clamp DNA clamp 11
Ribokinase-like Nucleotidylyl transferase 11
alpha/beta-Hydrolases Cadherin-like 11
Ribosomal protein L6 Ribosomal protein L6 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Serine metabolism enzymes domain ACT-like 11
HCP-like Ankyrin repeat 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
YjeF N-terminal domain-like Ribokinase-like 11
L30e-like alpha/beta knot 11
Rudiment single hybrid motif Single hybrid motif 11
Nucleic acid-binding proteins GAD domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ribonuclease H-like DNA/RNA polymerases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Pili subunits Receptor-binding domain of short tail fibre protein gp12 11
Cupredoxins Cupredoxins 11
C-type lectin-like Concanavalin A-like lectins/glucanases 11
Translation proteins Translation proteins 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Metallo-hydrolase/oxidoreductase Ribonuclease H-like 11
PGBD-like Zn-dependent exopeptidases 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Ribonuclease H-like HRDC-like 11
HRDC-like HRDC-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
CheW-like CheY-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
HCP-like P-loop containing nucleoside triphosphate hydrolases 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Globin-like Riboflavin synthase domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
CBS-domain pair MgtE membrane domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
LysM domain LysM domain 11
EspE N-terminal domain-like Cysteine proteinases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Putative isomerase YbhE RCC1/BLIP-II 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes Rhodanese/Cell cycle control phosphatase 11
Outer membrane efflux proteins (OEP) HlyD-like secretion proteins 11
Nucleotidylyl transferase tRNA-binding arm 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins BRCT domain 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
vWA-like vWA-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
CheY-like Cytidine deaminase-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Zinc beta-ribbon DNA primase core 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
LysM domain Duplicated hybrid motif 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Trigger factor ribosome-binding domain FKBP-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
GIY-YIG endonuclease RuvA domain 2-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
MgtE N-terminal domain-like CBS-domain pair 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
HCP-like PGBD-like 11
"Winged helix" DNA-binding domain GAF domain-like 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Nucleotidyltransferase TGS-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
YlxR-like L30e-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11

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