SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Marinobacter hydrocarbonoclasticus ATCC 49840

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

708 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3822
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 301
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2314
Nucleotide cyclase EAL domain-like 2112
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1914
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1611
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 163
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1510
CheY-like C-terminal effector domain of the bipartite response regulators 152
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 141
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 145
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 134
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 123
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1212
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 113
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1110
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 113
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 113
Actin-like ATPase domain Actin-like ATPase domain 113
Homodimeric domain of signal transducing histidine kinase CheY-like 1111
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 113
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 113
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 113
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 104
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 104
Thiolase-like Thiolase-like 92
GroES-like NAD(P)-binding Rossmann-fold domains 92
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 93
CheY-like PYP-like sensor domain (PAS domain) 99
PYP-like sensor domain (PAS domain) EAL domain-like 97
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 95
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 92
Thioredoxin-like GST C-terminal domain-like 91
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 85
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 81
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 85
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
Cytochrome c Cytochrome c 72
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 76
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
P-loop containing nucleoside triphosphate hydrolases MOP-like 71
CheY-like Nucleotide cyclase 77
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 74
TPR-like TPR-like 76
Homeodomain-like Homeodomain-like 74
ACT-like ACT-like 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Alpha-L RNA-binding motif Pseudouridine synthase 62
PreATP-grasp domain Rudiment single hybrid motif 62
CheY-like Homeodomain-like 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 62
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 62
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
cAMP-binding domain-like "Winged helix" DNA-binding domain 51
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 52
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 53
Histidine-containing phosphotransfer domain, HPT domain CheY-like 55
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
CheY-like EAL domain-like 44
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 43
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 43
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 44
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 43
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 42
Phospholipase D/nuclease Phospholipase D/nuclease 43
Triger factor/SurA peptide-binding domain-like FKBP-like 44
Calcium ATPase, transduction domain A HAD-like 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
MetI-like MetI-like 41
CheY-like CheY-like 44
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 43
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 42
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 42
HAD-like Calcium ATPase, transmembrane domain M 44
CoA-dependent acyltransferases CoA-dependent acyltransferases 41
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 31
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Aldolase post-HMGL domain-like 32
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 31
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
HD-domain/PDEase-like ACT-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 31
Zinc beta-ribbon Zinc beta-ribbon 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
LeuD/IlvD-like Aconitase iron-sulfur domain 33
Phage tail proteins Phage fibre proteins 32
Nucleotidyltransferase HD-domain/PDEase-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
Phage tail proteins gp5 N-terminal domain-like 32
Translation proteins EF-G C-terminal domain-like 33
CheW-like CheY-like 33
gp5 N-terminal domain-like Phage fibre proteins 32
Translation proteins SH3-like domain Nucleic acid-binding proteins 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 32
Phage tail proteins Phage tail proteins 32
Nucleotidyltransferase ACT-like 32
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
"Winged helix" DNA-binding domain PLP-dependent transferases 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
GAF domain-like PYP-like sensor domain (PAS domain) 33
RuvA domain 2-like Nucleic acid-binding proteins 33
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 33
Single hybrid motif CoA-dependent acyltransferases 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 31
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
RmlC-like cupins RmlC-like cupins 21
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
PreATP-grasp domain Single hybrid motif 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Periplasmic binding protein-like II Nucleotide cyclase 22
P-loop containing nucleoside triphosphate hydrolases TPR-like 22
Regulatory protein AraC Homeodomain-like 21
PDZ domain-like ClpP/crotonase 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Nucleotidyltransferase TGS-like 21
HD-domain/PDEase-like TGS-like 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HAMP domain-like Nucleotide cyclase 22
DinB/YfiT-like putative metalloenzymes C-type lectin-like 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
PUA domain-like Ribosomal protein S5 domain 2-like 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
GroES-like GroES-like 21
"Winged helix" DNA-binding domain GAF domain-like 21
cAMP-binding domain-like CBS-domain pair 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
HD-domain/PDEase-like GAF domain-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Thioredoxin-like Thioredoxin-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
GAF domain-like Nucleotide cyclase 22
Single hybrid motif Single hybrid motif 21
Aldolase Single hybrid motif 21
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 22
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Carbamate kinase-like ACT-like 21
TGS-like ACT-like 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 22
YbaK/ProRS associated domain HD-domain/PDEase-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
HMA, heavy metal-associated domain HAD-like 22
CheY-like HD-domain/PDEase-like 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
L30e-like alpha/beta knot 21
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
ClpP/crotonase ClpP/crotonase 21
PDZ domain-like PDZ domain-like 22
TPR-like C-terminal effector domain of the bipartite response regulators 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Rudiment single hybrid motif Single hybrid motif 21
DsbC/DsbG N-terminal domain-like Thioredoxin-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
Sensory domain-like PYP-like sensor domain (PAS domain) 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
post-HMGL domain-like Single hybrid motif 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 21
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like alpha/beta knot 11
UROD/MetE-like UROD/MetE-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
"Winged helix" DNA-binding domain Nucleotidyltransferase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Anthrax protective antigen Fibronectin type III 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PurS-like Class I glutamine amidotransferase-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Metallo-dependent phosphatases UDP-Glycosyltransferase/glycogen phosphorylase 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ferritin-like HAD-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Pili subunits GspK insert domain-like 11
Thioredoxin-like TPR-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Chorismate mutase II ACT-like 11
GAF domain-like Phosphohistidine domain 11
GspK insert domain-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Aldolase AFP III-like domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
CheY-like PP2C-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
PheT/TilS domain Putative DNA-binding domain 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Peptide methionine sulfoxide reductase Mss4-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Macro domain-like Zn-dependent exopeptidases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Lysozyme-like LysM domain 11
Trigger factor ribosome-binding domain FKBP-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Zinc beta-ribbon 11
Dihydropteroate synthetase-like Methionine synthase domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Trypsin-like serine proteases PDZ domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Formyltransferase FMT C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Carbamate kinase-like PUA domain-like 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
RuvA domain 2-like JAB1/MPN domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
TGS-like Class II aaRS and biotin synthetases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Inosine monophosphate dehydrogenase (IMPDH) Inosine monophosphate dehydrogenase (IMPDH) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Cupredoxins Cupredoxins 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
UDP-Glycosyltransferase/glycogen phosphorylase S-adenosyl-L-methionine-dependent methyltransferases 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
OMPA-like TSP type-3 repeat 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
PurS-like FGAM synthase PurL, linker domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
TGS-like ThrRS/AlaRS common domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
FliG FliG 11
PurS-like PurM N-terminal domain-like 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Hsp33 domain HSP33 redox switch-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
HD-domain/PDEase-like Homodimeric domain of signal transducing histidine kinase 11
PHP domain-like Nucleic acid-binding proteins 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Flavoproteins Riboflavin synthase domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
PreATP-grasp domain PreATP-grasp domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
FKBP-like FKBP-like 11
PIN domain-like DNA/RNA polymerases 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Cupredoxins Cytochrome c 11
RuvA domain 2-like BRCT domain 11
Periplasmic binding protein-like II Lysozyme-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
HAMP domain-like EAL domain-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
CheY-like Methylesterase CheB, C-terminal domain 11
Periplasmic binding protein-like II OmpA-like 11
CheY-like GAF domain-like 11
Lysozyme-like PGBD-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
Acetyl-CoA synthetase-like Heme oxygenase-like 11
Cadherin-like Ricin B-like lectins 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PP2C-like Protein kinase-like (PK-like) 11
CheY-like CheC-like 11
Pili subunits RuvA domain 2-like 11
Pseudouridine synthase PUA domain-like 11
FAD-linked oxidoreductase ALDH-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
MgtE N-terminal domain-like CBS-domain pair 11
ACT-like HAD-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
RuvA domain 2-like RuvA domain 2-like 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
Zn-dependent exopeptidases LysM domain 11
RmlC-like cupins Homeodomain-like 11
Nudix Metallo-hydrolase/oxidoreductase 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
PilZ domain-like Nucleotide cyclase 11
cAMP-binding domain-like HD-domain/PDEase-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
DNA methylase specificity domain DNA methylase specificity domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Ribonuclease H-like RuvA domain 2-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
OMPA-like OmpA-like 11
HAMP domain-like CheY-like 11
HMA, heavy metal-associated domain Cation efflux protein transmembrane domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Anthrax protective antigen Anthrax protective antigen 11
Zinc beta-ribbon DNA primase core 11
HCP-like HCP-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Ferritin-like Calcium ATPase, transduction domain A 11
Lamin A/C globular tail domain DNase I-like 11
Tex N-terminal region-like Ribonuclease H-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
CBS-domain pair MgtE membrane domain-like 11
ClpP/crotonase NfeD domain-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Methionine synthase domain Methionine synthase activation domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
PHP14-like Phospholipase D/nuclease 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Sensory domain-like HD-domain/PDEase-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Galactose mutarotase-like E set domains 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
PilZ domain-like EAL domain-like 11
Sensory domain-like Nucleotide cyclase 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Translation proteins PRC-barrel domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
RNase III domain-like dsRNA-binding domain-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Ribonuclease H-like HRDC-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Homeodomain-like SIS domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Rubredoxin-like Rubredoxin-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
CheY-like TPR-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like DNA/RNA polymerases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
YrdC/RibB RibA-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
CheC-like Surface presentation of antigens (SPOA) 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
TerB-like Chaperone J-domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11
FMN-binding split barrel UbiD C-terminal domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
FAS1 domain FAS1 domain 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Nucleic acid-binding proteins GAD domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DNase I-like Type I dockerin domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Nudix Nudix 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
TSP type-3 repeat OmpA-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
(Trans)glycosidases Glycosyl hydrolase domain 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Nucleotidyltransferase Nucleotidyltransferase 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
vWA-like TPR-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Outer membrane efflux proteins (OEP) OmpA-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
GAF domain-like GAF domain-like 11
DNA-glycosylase Nudix 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins BRCT domain 11
Lamin A/C globular tail domain Type I dockerin domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PIN domain-like Ribonuclease H-like 11
LysM domain LysM domain 11
HRDC-like HRDC-like 11
GAF domain-like Homeodomain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
GAF domain-like EAL domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 11
CBS-domain pair CBS-domain pair 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
GIY-YIG endonuclease RuvA domain 2-like 11
CBS-domain pair Nucleotide cyclase 11
ACT-like Formyltransferase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
DinB/YfiT-like putative metalloenzymes S-adenosyl-L-methionine-dependent methyltransferases 11
HAMP domain-like GAF domain-like 11
ISP domain Bet v1-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Putative DNA-binding domain Translation proteins 11
TGS-like Class II aaRS ABD-related 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Class II aaRS and biotin synthetases Translation proteins 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Hemerythrin-like EAL domain-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Translation proteins ThrRS/AlaRS common domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Apolipoprotein A-I Methyl-accepting chemotaxis protein (MCP) signaling domain 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
DNA clamp DNA clamp 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
E set domains (Trans)glycosidases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Hemerythrin-like Nucleotide cyclase 11
Anthrax protective antigen beta-Roll 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Periplasmic binding protein-like II ACT-like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
Nudix Thiamin phosphate synthase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases EspE N-terminal domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
CarD-like TRCF domain-like 11
Flagellar hook protein flgE Flagellar hook protein flgE 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
NTF2-like Sec-C motif 11
E set domains Glycosyl hydrolase domain 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Metalloproteases ("zincins"), catalytic domain Fibronectin type III 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
HAD-like HAD-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
EAL domain-like Sensory domain-like 11
Ribonuclease H-like GIY-YIG endonuclease 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
HD-domain/PDEase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Translation proteins Translation proteins 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PPK N-terminal domain-like PHP14-like 11
PurS-like PurM C-terminal domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
YajQ-like YajQ-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Sensory domain-like GAF domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
GroEL-intermediate domain like GroEL apical domain-like 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Barwin-like endoglucanases Sporulation related repeat 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]