SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Listeria ivanovii subsp. ivanovii PAM 55

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

561 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2415
Actin-like ATPase domain Actin-like ATPase domain 215
L domain-like E set domains 2010
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 134
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 132
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 131
cAMP-binding domain-like "Winged helix" DNA-binding domain 111
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 91
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 94
"Winged helix" DNA-binding domain Chorismate lyase-like 91
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 97
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 83
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 81
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 81
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 87
CheY-like C-terminal effector domain of the bipartite response regulators 81
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 85
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 81
GroES-like NAD(P)-binding Rossmann-fold domains 81
Calcium ATPase, transduction domain A HAD-like 74
Homeodomain-like SIS domain 71
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 75
(Trans)glycosidases Glycosyl hydrolase domain 75
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 74
HAD-like Calcium ATPase, transmembrane domain M 74
Phoshotransferase/anion transport protein PTS system IIB component-like 64
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 64
"Winged helix" DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 65
PTS-regulatory domain, PRD PTS system IIB component-like 64
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 64
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 62
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 53
E set domains Prokaryotic SH3-related domain 55
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 51
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
Glucose permease domain IIB Duplicated hybrid motif 52
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
L domain-like Prokaryotic SH3-related domain 55
Prokaryotic SH3-related domain Prokaryotic SH3-related domain 55
P-loop containing nucleoside triphosphate hydrolases Translation proteins 55
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 41
MalF N-terminal region-like MetI-like 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 41
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 41
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 42
Homeodomain-like Homeodomain-like 44
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 43
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 43
PreATP-grasp domain Rudiment single hybrid motif 42
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
"Winged helix" DNA-binding domain Actin-like ATPase domain 32
NAD(P)-binding Rossmann-fold domains ACT-like 33
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 31
CcmK-like CcmK-like 32
Galactose mutarotase-like Glycosyl hydrolase domain 33
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 31
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
lambda repressor-like DNA-binding domains TPR-like 31
Glycoside hydrolase/deacetylase Galactose mutarotase-like 33
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 31
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Triger factor/SurA peptide-binding domain-like FKBP-like 32
ACT-like ACT-like 32
Bacterial adhesins Bacterial adhesins 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
L domain-like L domain-like 33
Translation proteins EF-G C-terminal domain-like 33
Bacterial adhesins Cna protein B-type domain 33
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 32
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 32
RuvA domain 2-like Nucleic acid-binding proteins 33
Thiolase-like Thiolase-like 31
LysM domain LysM domain 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Periplasmic binding protein-like II MetI-like 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Cna protein B-type domain Cna protein B-type domain 33
Galactose mutarotase-like (Trans)glycosidases 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 31
Alpha-L RNA-binding motif Pseudouridine synthase 31
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 31
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
alpha/beta-Hydrolases Galactose-binding domain-like 22
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
L30e-like alpha/beta knot 21
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 22
"Winged helix" DNA-binding domain PTS system fructose IIA component-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
Galactose mutarotase-like Six-hairpin glycosidases 21
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Regulatory protein AraC Homeodomain-like 22
L domain-like PKD domain 22
TPR-like TPR-like 22
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 22
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 21
PLP-binding barrel Alanine racemase C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases PTS-regulatory domain, PRD 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Single hybrid motif CoA-dependent acyltransferases 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
CheC-like Surface presentation of antigens (SPOA) 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 21
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Ribonuclease H-like Nucleic acid-binding proteins 22
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases PTS system fructose IIA component-like 22
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 22
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
Phospholipase D/nuclease Phospholipase D/nuclease 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 21
Class II aaRS and biotin synthetases SufE/NifU 21
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
SacY-like RNA-binding domain PTS-regulatory domain, PRD 21
Outer arm dynein light chain 1 E set domains 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 22
PTS-regulatory domain, PRD PTS system fructose IIA component-like 22
(Trans)glycosidases Cyclophilin-like 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Carbamate kinase-like ACT-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 21
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
NTF2-like Penicillin binding protein dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Rudiment single hybrid motif Aldolase 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
FliG FliG 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Aldolase post-HMGL domain-like 11
Zinc beta-ribbon DNA primase core 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
TGS-like ThrRS/AlaRS common domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Metallo-hydrolase/oxidoreductase RuvA domain 2-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Galactose mutarotase-like Galactose-binding domain-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Rhomboid-like TPR-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Protein kinase-like (PK-like) Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
HMA, heavy metal-associated domain HAD-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
ClpP/crotonase PGBD-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
GroEL-intermediate domain like GroEL apical domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
PIN domain-like DNA/RNA polymerases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Periplasmic binding protein-like II ACT-like 11
PreATP-grasp domain PreATP-grasp domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Galactose-binding domain-like Six-hairpin glycosidases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
HprK N-terminal domain-like CBS-domain pair 11
"Winged helix" DNA-binding domain GAF domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
E set domains (Trans)glycosidases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
CarD-like TRCF domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
TGS-like ACT-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
"Winged helix" DNA-binding domain PTS system IIB component-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Sensory domain-like HAMP domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Translation proteins PRC-barrel domain 11
Nqo1 middle domain-like alpha-helical ferredoxin 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Tetrapyrrole methylase HemD-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
MetI-like MetI-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PK C-terminal domain-like Phosphohistidine domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Rudiment single hybrid motif Single hybrid motif 11
4Fe-4S ferredoxins ARM repeat 11
CheC-like CheC-like 11
Fibronectin type III Carbohydrate binding domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
post-HMGL domain-like Single hybrid motif 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
PYP-like sensor domain (PAS domain) SpoIIaa-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
4Fe-4S ferredoxins ADC-like 11
Chitinase insertion domain Fibronectin type III 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
RuvA domain 2-like RuvA domain 2-like 11
2Fe-2S ferredoxin-like ADC-like 11
(Trans)glycosidases Carbohydrate binding domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Class II aaRS and biotin synthetases Translation proteins 11
E set domains Glycosyl hydrolase domain 11
PDZ domain-like PGBD-like 11
Translation proteins ThrRS/AlaRS common domain 11
PreATP-grasp domain Aldolase 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Aldolase Single hybrid motif 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins BRCT domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
RmlC-like cupins Homeodomain-like 11
CheW-like CheY-like 11
(Trans)glycosidases Fibronectin type III 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
NTF2-like beta-lactamase/transpeptidase-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PreATP-grasp domain Single hybrid motif 11
Single hybrid motif Single hybrid motif 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
CheY-binding domain of CheA CheW-like 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
UROD/MetE-like UROD/MetE-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
HD-domain/PDEase-like TGS-like 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
PreATP-grasp domain post-HMGL domain-like 11
SH3-domain SH3-domain 11
PK beta-barrel domain-like Phosphohistidine domain 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
RuvA domain 2-like JAB1/MPN domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Nucleotide-diphospho-sugar transferases TPR-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Serine metabolism enzymes domain ACT-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Cobalamin adenosyltransferase-like GlcG-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Nucleotidylyl transferase tRNA-binding arm 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
TGS-like Class II aaRS ABD-related 11
(Trans)glycosidases Chitinase insertion domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
DNA clamp DNA clamp 11
PTS system fructose IIA component-like PTS IIb component 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
LysM domain Cysteine proteinases 11
NEAT domain-like NEAT domain-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
HD-domain/PDEase-like ACT-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
(Trans)glycosidases Galactose-binding domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Multidrug efflux transporter AcrB transmembrane domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
"Winged helix" DNA-binding domain PRTase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleotidyltransferase TGS-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like Ribonuclease H-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
DNA-glycosylase Nudix 11
Nucleotidyltransferase PHP domain-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
TGS-like Class II aaRS and biotin synthetases 11
Glycosyl hydrolase domain Galactose-binding domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like Ribonuclease H-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
E set domains E set domains 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleotidyltransferase ACT-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
ABC transporter transmembrane region ABC transporter transmembrane region 11
LysM domain Barwin-like endoglucanases 11
E set domains Six-hairpin glycosidases 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Translation proteins Ribosomal protein S5 domain 2-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Zinc beta-ribbon N-terminal domain of DnaB helicase 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Chitinase insertion domain Carbohydrate binding domain 11
RNase III domain-like dsRNA-binding domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
CheY-like Homeodomain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
PDZ domain-like ClpP/crotonase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Swiveling domain of dehydratase reactivase alpha subunit Actin-like ATPase domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
DhaL-like DAK1/DegV-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
PUA domain-like alpha/beta knot 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
DNA repair protein MutS, domain III SMR domain-like 11
ALDH-like Dehydroquinate synthase-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
"Winged helix" DNA-binding domain CBS-domain pair 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain Ribokinase-like 11
Hsp33 domain HSP33 redox switch-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Formyltransferase FMT C-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Metallo-hydrolase/oxidoreductase SCP-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Nucleic acid-binding proteins GAD domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
alpha-helical ferredoxin Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
DNA primase core N-terminal domain of DnaB helicase 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Tex N-terminal region-like RuvA domain 2-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
"Winged helix" DNA-binding domain HRDC-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Translation proteins Translation proteins 11
Cystatin/monellin Cystatin/monellin 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PRTase-like PRTase-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Glutamine synthetase/guanido kinase Glutathione synthetase ATP-binding domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Trypsin-like serine proteases PDZ domain-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
RuvA domain 2-like BRCT domain 11

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