SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Campylobacter sp. 03-427

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

418 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 147
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 126
Actin-like ATPase domain Actin-like ATPase domain 84
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 65
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 63
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 52
PurM N-terminal domain-like PurM C-terminal domain-like 52
P-loop containing nucleoside triphosphate hydrolases Translation proteins 55
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 44
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 41
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 42
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Cytochrome c Cytochrome c 42
CheY-like C-terminal effector domain of the bipartite response regulators 41
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 31
Calcium ATPase, transduction domain A HAD-like 33
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 31
PreATP-grasp domain Rudiment single hybrid motif 32
Nucleotide cyclase EAL domain-like 33
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
PYP-like sensor domain (PAS domain) Nucleotide cyclase 22
Nucleic acid-binding proteins RuvA domain 2-like 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
CheW-like CheY-like 22
Homeodomain-like Homeodomain-like 22
FKBP-like Triger factor/SurA peptide-binding domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
CheC-like Surface presentation of antigens (SPOA) 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
PDZ domain-like PDZ domain-like 22
ACT-like ACT-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 22
Nqo5-like HydB/Nqo4-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 22
Homodimeric domain of signal transducing histidine kinase CheY-like 22
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
TPR-like TPR-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
PYP-like sensor domain (PAS domain) EAL domain-like 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Subtilisin-like Autotransporter 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
HMA, heavy metal-associated domain HAD-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
HAD-like Calcium ATPase, transmembrane domain M 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Formyltransferase FMT C-terminal domain-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Translation proteins EF-G C-terminal domain-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Zinc beta-ribbon Zinc beta-ribbon 11
Nucleic acid-binding proteins BRCT domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
DNA clamp DNA clamp 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
"Helical backbone" metal receptor "Helical backbone" metal receptor 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PPK N-terminal domain-like PHP14-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PIN domain-like DNA/RNA polymerases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Fibronectin type III Fibronectin type III 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Carbamate kinase-like ACT-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Chorismate mutase II ACT-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Phase 1 flagellin Phase 1 flagellin 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Cupredoxins Cupredoxins 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Translation proteins Translation proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
"Helical backbone" metal receptor Lipocalins 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
RuvA domain 2-like BRCT domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Flagellar hook protein flgE Flagellar hook protein flgE 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins GAD domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
OMPA-like TSP type-3 repeat 11
Ribokinase-like Nucleotidylyl transferase 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
MetI-like MetI-like 11
Trypsin-like serine proteases PDZ domain-like 11
PIN domain-like Ribonuclease H-like 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
YrdC/RibB RibA-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
GIY-YIG endonuclease RuvA domain 2-like 11
GlnB-like Tryptophan synthase beta subunit-like PLP-dependent enzymes 11
Ribosomal protein L6 Ribosomal protein L6 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
CheY-like Nucleotide cyclase 11
FliG FliG 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Ribbon-helix-helix ACT-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
SirA-like DsrEFH-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
GroEL equatorial domain-like GroEL apical domain-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Metallo-dependent hydrolases Dimeric alpha+beta barrel 11
Cupredoxins Cytochrome c 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
OMPA-like OmpA-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Aldolase post-HMGL domain-like 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
PUA domain-like Nucleotidylyl transferase 11
HD-domain/PDEase-like TGS-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Serine metabolism enzymes domain ACT-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Aldolase AFP III-like domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Translation proteins ThrRS/AlaRS common domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Peptide methionine sulfoxide reductase Mss4-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
ACT-like Formyltransferase 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
post-HMGL domain-like Single hybrid motif 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
UROD/MetE-like UROD/MetE-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Trigger factor ribosome-binding domain FKBP-like 11
YajQ-like YajQ-like 11
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidylyl transferase tRNA-binding arm 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
FAD-linked oxidoreductase ALDH-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
PHP14-like Phospholipase D/nuclease 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
LysM domain LysM domain 11
Nitrous oxide reductase, N-terminal domain Cytochrome c 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
MOP-like MOP-like 11
PDZ domain-like ClpP/crotonase 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
CBS-domain pair MgtE membrane domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
"Winged helix" DNA-binding domain GAF domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Class II aaRS and biotin synthetases Translation proteins 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
CheY-like CheY-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
YjeF N-terminal domain-like Ribokinase-like 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Translation proteins PRC-barrel domain 11
Zinc beta-ribbon DNA primase core 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Lysozyme-like LysM domain 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Aldolase Single hybrid motif 11
Barwin-like endoglucanases Sporulation related repeat 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
CarD-like TRCF domain-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 11
FMN-binding split barrel FMN-binding split barrel 11
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Cysteine proteinases Hedgehog/DD-peptidase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Thiolase-like Thiolase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
MgtE N-terminal domain-like CBS-domain pair 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Hemerythrin-like Nucleotide cyclase 11
HisI-like all-alpha NTP pyrophosphatases 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
TSP type-3 repeat OmpA-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
"Winged helix" DNA-binding domain MOP-like 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II ACT-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Nucleotidyltransferase TGS-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
RNase III domain-like dsRNA-binding domain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 11
PreATP-grasp domain PreATP-grasp domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
L30e-like alpha/beta knot 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]