SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Tistrella mobilis KA081020-065

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

745 domain combination pairs.
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Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 922
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5524
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 553
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4412
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 363
Homeodomain-like Homeodomain-like 316
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 293
NAD(P)-binding Rossmann-fold domains GroES-like 254
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2514
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2514
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 245
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 234
Thioredoxin-like GST C-terminal domain-like 213
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 203
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1913
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 195
P-loop containing nucleoside triphosphate hydrolases MOP-like 181
CheY-like C-terminal effector domain of the bipartite response regulators 183
"Winged helix" DNA-binding domain GAF domain-like 171
Thiolase-like Thiolase-like 172
Acetyl-CoA synthetase-like ACP-like 1615
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 165
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 164
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 158
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 141
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 135
ACP-like CoA-dependent acyltransferases 1312
Actin-like ATPase domain Actin-like ATPase domain 135
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 1211
CoA-dependent acyltransferases CoA-dependent acyltransferases 1211
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 129
Homodimeric domain of signal transducing histidine kinase CheY-like 129
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 115
"Winged helix" DNA-binding domain PLP-dependent transferases 111
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 113
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 117
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 106
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 106
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 106
RmlC-like cupins Homeodomain-like 102
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 106
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 101
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 105
"Winged helix" DNA-binding domain Chorismate lyase-like 102
PreATP-grasp domain Rudiment single hybrid motif 105
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 94
beta-Roll beta-Roll 98
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 95
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 95
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 91
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 99
HAD-like Calcium ATPase, transmembrane domain M 99
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 92
PYP-like sensor domain (PAS domain) CheY-like 96
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 95
Calcium ATPase, transduction domain A HAD-like 99
Class I glutamine amidotransferase-like Homeodomain-like 83
CheY-like Homeodomain-like 83
cAMP-binding domain-like "Winged helix" DNA-binding domain 81
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 81
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 76
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 76
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
Histidine-containing phosphotransfer domain, HPT domain CheY-like 76
P-loop containing nucleoside triphosphate hydrolases Translation proteins 75
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 77
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 61
MetI-like MetI-like 63
NAD(P)-binding Rossmann-fold domains ACP-like 66
lambda repressor-like DNA-binding domains RmlC-like cupins 61
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 61
Cytochrome c Cytochrome c 63
ClpP/crotonase ClpP/crotonase 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 62
CheY-like CheY-like 64
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 64
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 55
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 55
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 51
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 52
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 54
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 55
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 55
ACP-like ACP-like 55
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 54
HMA, heavy metal-associated domain HAD-like 55
ACP-like alpha/beta-Hydrolases 55
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 54
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 52
Triger factor/SurA peptide-binding domain-like FKBP-like 54
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 55
PLP-binding barrel Alanine racemase C-terminal domain-like 52
ISP domain Bet v1-like 42
Cupredoxins Cupredoxins 42
ACT-like ACT-like 43
Regulatory protein AraC Homeodomain-like 41
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 41
Thiolase-like ACP-like 44
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 44
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
Translation proteins EF-G C-terminal domain-like 43
PurM N-terminal domain-like PurM C-terminal domain-like 42
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 41
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 44
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
GAF domain-like Homodimeric domain of signal transducing histidine kinase 43
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
HlyD-like secretion proteins HlyD-like secretion proteins 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 33
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Single hybrid motif CoA-dependent acyltransferases 32
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 33
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 33
Thiolase-like NAD(P)-binding Rossmann-fold domains 33
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Translation proteins ThrRS/AlaRS common domain 32
(Trans)glycosidases Glycosyl hydrolase domain 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 33
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 31
CoA-dependent acyltransferases alpha/beta-Hydrolases 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Glutathione synthetase ATP-binding domain-like Single hybrid motif 32
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Trypsin-like serine proteases PDZ domain-like 32
Nucleotide cyclase EAL domain-like 32
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 33
PDZ domain-like PDZ domain-like 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
NAD(P)-binding Rossmann-fold domains CoA-dependent acyltransferases 33
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Rudiment single hybrid motif Single hybrid motif 32
Alpha-L RNA-binding motif Pseudouridine synthase 33
S-adenosyl-L-methionine-dependent methyltransferases Acetyl-CoA synthetase-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 33
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 31
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 33
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 31
PreATP-grasp domain Single hybrid motif 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
gp5 N-terminal domain-like Phage fibre proteins 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
CheY-like Nucleotide cyclase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Cadherin-like Cadherin-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
E set domains Glycosyl hydrolase domain 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
Sensory domain-like Nucleotide cyclase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 21
ADC synthase Class I glutamine amidotransferase-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
S-adenosyl-L-methionine-dependent methyltransferases alpha/beta-Hydrolases 22
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
Nucleotidyltransferase ACT-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Phage tail proteins Phage tail proteins 22
HAMP domain-like Nucleotide cyclase 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 22
GAF domain-like Nucleotide cyclase 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 22
PYP-like sensor domain (PAS domain) GAF domain-like 22
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
ThrRS/AlaRS common domain Class II aaRS ABD-related 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 22
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 22
Aldolase post-HMGL domain-like 21
YrdC/RibB RibA-like 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 21
PYP-like sensor domain (PAS domain) Nucleotide cyclase 22
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
alpha-helical ferredoxin Nucleotide-binding domain 22
CoA-dependent acyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
TPR-like TPR-like 22
Nucleic acid-binding proteins RuvA domain 2-like 22
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 21
E set domains (Trans)glycosidases 22
Cupredoxins Cytochrome c 22
4Fe-4S ferredoxins ADC-like 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
PYP-like sensor domain (PAS domain) EAL domain-like 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
GroES-like GroES-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Bacterial muramidases Lysozyme-like 21
2Fe-2S ferredoxin-like Nucleotide cyclase 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
Phage tail proteins gp5 N-terminal domain-like 22
E set domains E set domains 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Thiolase-like CoA-dependent acyltransferases 22
L30e-like alpha/beta knot 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Phage tail proteins Phage fibre proteins 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Pectin lyase-like Pectin lyase-like 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
C-terminal effector domain of the bipartite response regulators alpha/beta-Hydrolases 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
GntR ligand-binding domain-like Metallo-dependent hydrolases 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain beta-Roll 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Rudiment single hybrid motif Aldolase 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
PreATP-grasp domain ClpP/crotonase 11
PHP14-like Phospholipase D/nuclease 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Soluble quinoprotein glucose dehydrogenase PEBP-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ribonuclease H-like HRDC-like 11
Thioredoxin-like TPR-like 11
2Fe-2S ferredoxin-like ADC-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
TGS-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Protein kinase-like (PK-like) HCP-like 11
PDZ domain-like ClpP/crotonase 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Globin-like Riboflavin synthase domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain Calcium-dependent phosphotriesterase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
FabD/lysophospholipase-like GroES-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Histidine-containing phosphotransfer domain, HPT domain GlnB-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
Homeodomain-like SIS domain 11
Class II aaRS and biotin synthetases Translation proteins 11
alpha/beta-Hydrolases beta-Roll 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Radical SAM enzymes RuvA domain 2-like 11
Chelatase Thioredoxin-like 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, catalytic domain 11
DNase I-like Pectin lyase-like 11
Tropomyosin OmpA-like 11
CheW-like CheY-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
alpha/beta knot Isochorismatase-like hydrolases 11
PIN domain-like DNA/RNA polymerases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PreATP-grasp domain Aldolase 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
UROD/MetE-like UROD/MetE-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidyltransferase TGS-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
FliG FliG 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
AhpD-like RmlC-like cupins 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
alpha/beta-Hydrolases OsmC-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Single hybrid motif ClpP/crotonase 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Metallo-dependent phosphatases YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Class II aaRS and biotin synthetases GAD domain-like 11
HPr-like Phosphohistidine domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
HD-domain/PDEase-like TGS-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
CheC-like Surface presentation of antigens (SPOA) 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
RmlC-like cupins RmlC-like cupins 11
CarD-like TRCF domain-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
CheY-like Methylesterase CheB, C-terminal domain 11
CBS-domain pair MgtE membrane domain-like 11
FMN-binding split barrel GAF domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
LysM domain LysM domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Nucleotidylyl transferase tRNA-binding arm 11
FabD/lysophospholipase-like ACP-like 11
RuvA domain 2-like BRCT domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Barwin-like endoglucanases Sporulation related repeat 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Ribonuclease H-like mu transposase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Carbamate kinase-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like EAL domain-like 11
Carbamate kinase-like PUA domain-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
FAD-linked oxidoreductase ALDH-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Metallo-dependent phosphatases beta-Roll 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
TerB-like Chaperone J-domain 11
Thioredoxin-like NHL repeat 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Phoshotransferase/anion transport protein HPr-like 11
HAMP domain-like GAF domain-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
MoaD/ThiS ThiG-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Zn-dependent exopeptidases Autotransporter 11
Hsp33 domain HSP33 redox switch-like 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
YWTD domain Calcium-dependent phosphotriesterase 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
TGS-like ThrRS/AlaRS common domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Globin-like Nucleotide cyclase 11
CheY-like HD-domain/PDEase-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
WD40 repeat-like WD40 repeat-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Nudix "Winged helix" DNA-binding domain 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Calcium-dependent phosphotriesterase Cadherin-like 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
Metallo-dependent phosphatases Calcium-dependent phosphotriesterase 11
TGS-like Class II aaRS ABD-related 11
Terpenoid synthases Terpenoid synthases 11
Periplasmic binding protein-like II ACT-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins GAD domain-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase beta-Roll 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
PPK N-terminal domain-like PHP14-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains Actin-like ATPase domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Pectin lyase-like Autotransporter 11
YebC-like PFL-like glycyl radical enzymes 11
PEP carboxykinase-like P-loop containing nucleoside triphosphate hydrolases 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
PH0987 N-terminal domain-like Cyclophilin-like 11
"Winged helix" DNA-binding domain Bet v1-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, peptide-binding domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 11
HD-domain/PDEase-like "Winged helix" DNA-binding domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
E set domains alpha/beta-Hydrolases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
LysM domain Duplicated hybrid motif 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
GroES-like ACP-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Zinc beta-ribbon DNA primase core 11
Ribokinase-like Nucleotidylyl transferase 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
DNA-glycosylase Nudix 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Heme oxygenase-like Heme oxygenase-like 11
Thiolase-like GroES-like 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Urease metallochaperone UreE, C-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Calcium-dependent phosphotriesterase beta-Roll 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
"Winged helix" DNA-binding domain Phosphotyrosine protein phosphatases I 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Subtilisin-like Autotransporter 11
Acetyl-CoA synthetase-like Thiolase-like 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Poly A polymerase C-terminal region-like ACT-like 11
Single hybrid motif alpha/beta-Hydrolases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
PIN domain-like Ribonuclease H-like 11
PUA domain-like alpha/beta knot 11
S-adenosyl-L-methionine-dependent methyltransferases RmlC-like cupins 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
HRDC-like HRDC-like 11
HD-domain/PDEase-like ACT-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Periplasmic binding protein-like II CheY-like 11
FKBP-like FKBP-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
Sensory domain-like Sensory domain-like 11
alpha-helical ferredoxin ARM repeat 11
Nucleotidyltransferase Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
PHP domain-like AF1531-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
GAF domain-like Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
"Winged helix" DNA-binding domain ClpP/crotonase 11
Translation proteins Translation proteins 11
Periplasmic binding protein-like II Nucleotide cyclase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
Nucleic acid-binding proteins BRCT domain 11
ACT-like Formyltransferase 11
GroEL-intermediate domain like GroEL apical domain-like 11
(Trans)glycosidases NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Thioredoxin-like Six-hairpin glycosidases 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
"Winged helix" DNA-binding domain Metallo-dependent hydrolases 11
MgtE N-terminal domain-like CBS-domain pair 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
CBS-domain pair Homodimeric domain of signal transducing histidine kinase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
TGS-like Class II aaRS and biotin synthetases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
YlxR-like L30e-like 11
PheT/TilS domain Putative DNA-binding domain 11
Translation proteins PRC-barrel domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
DNA clamp DNA clamp 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Calcium-dependent phosphotriesterase YVTN repeat-like/Quinoprotein amine dehydrogenase 11
RmlC-like cupins Rhodanese/Cell cycle control phosphatase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
DNase I-like Autotransporter 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Thiolase-like FabD/lysophospholipase-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
GAF domain-like Homeodomain-like 11
Rudiment single hybrid motif ClpP/crotonase 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain YVTN repeat-like/Quinoprotein amine dehydrogenase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Formyltransferase FMT C-terminal domain-like 11
MoaD/ThiS Molybdopterin synthase subunit MoaE 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 11
HAMP domain-like PP2C-like 11
CobE/GbiG C-terminal domain-like Tetrapyrrole methylase 11
Serine metabolism enzymes domain ACT-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
S-adenosyl-L-methionine-dependent methyltransferases GroES-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
MFS general substrate transporter MFS general substrate transporter 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Galactose-binding domain-like Galactose-binding domain-like 11
PTS system IIB component-like PTS system IIB component-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
CheW-like CheW-like 11
Thiolase-like Nucleic acid-binding proteins 11
Macro domain-like Zn-dependent exopeptidases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
CBS-domain pair ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
(Trans)glycosidases (Trans)glycosidases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Thioredoxin-like Nqo1C-terminal domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Aldolase RmlC-like cupins 11
Thioredoxin-like Nqo1 middle domain-like 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
RelE-like P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11

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